Wall clock time and date at job start Mon Mar 30 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46599 * 2 1 4 4 C 1.52997 * 109.47467 * 240.00495 * 2 1 3 5 5 O 1.45198 * 109.47044 * 119.99928 * 2 1 3 6 6 C 1.34636 * 116.99896 * 60.00768 * 5 2 1 7 7 O 1.21502 * 120.00164 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99698 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00075 * 185.06225 * 8 6 5 10 10 C 1.50708 * 109.53402 * 301.88107 * 9 8 6 11 11 H 1.07997 * 119.99746 * 125.20784 * 10 9 8 12 12 C 1.37880 * 119.99854 * 305.20519 * 10 9 8 13 13 N 1.31516 * 119.99947 * 6.10598 * 12 10 9 14 14 Si 1.86797 * 119.99876 * 186.09727 * 12 10 9 15 15 H 1.48504 * 109.46689 * 60.00726 * 14 12 10 16 16 H 1.48505 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47362 * 300.00450 * 14 12 10 18 18 C 1.53119 * 109.51355 * 181.78833 * 9 8 6 19 19 C 1.53120 * 109.15107 * 297.72193 * 18 9 8 20 20 C 1.53035 * 109.27768 * 302.33933 * 19 18 9 21 21 N 1.46852 * 109.52162 * 59.18024 * 20 19 18 22 22 C 1.46840 * 111.19821 * 298.25350 * 21 20 19 23 23 H 1.09002 * 109.46973 * 299.99559 * 1 2 3 24 24 H 1.08998 * 109.47448 * 59.99966 * 1 2 3 25 25 H 1.09008 * 109.46726 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46947 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47248 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.47097 * 60.00517 * 3 2 1 29 29 H 1.09008 * 109.46780 * 299.99897 * 4 2 1 30 30 H 1.08998 * 109.47163 * 59.99364 * 4 2 1 31 31 H 1.08993 * 109.47226 * 179.97438 * 4 2 1 32 32 H 0.97003 * 120.00196 * 5.05990 * 8 6 5 33 33 H 0.96999 * 119.99577 * 184.92439 * 13 12 10 34 34 H 1.08999 * 109.53134 * 177.81410 * 18 9 8 35 35 H 1.09004 * 109.57132 * 57.65610 * 18 9 8 36 36 H 1.08999 * 109.49844 * 182.39727 * 19 18 9 37 37 H 1.09000 * 109.49784 * 62.28389 * 19 18 9 38 38 H 1.08997 * 109.46331 * 299.16296 * 20 19 18 39 39 H 1.09000 * 109.45327 * 179.19009 * 20 19 18 40 40 H 1.00907 * 110.99958 * 62.35758 * 21 20 19 41 41 H 1.09001 * 109.46062 * 181.75814 * 22 21 20 42 42 H 1.08995 * 109.46717 * 301.73876 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3382 7 8 0.9511 -2.5095 0.5039 8 7 2.0682 -2.6657 2.4166 9 6 1.7685 -4.0953 2.5284 10 6 0.2769 -4.3034 2.4728 11 1 -0.1474 -4.9773 1.7433 12 6 -0.5459 -3.6334 3.3532 13 7 -0.0441 -2.7242 4.1601 14 14 -2.3735 -4.0171 3.3998 15 1 -2.5701 -5.4484 3.7434 16 1 -3.0318 -3.1667 4.4239 17 1 -2.9714 -3.7408 2.0689 18 6 2.3096 -4.6289 3.8577 19 6 3.8322 -4.4682 3.8811 20 6 4.4369 -5.2104 2.6871 21 7 3.8880 -4.6630 1.4399 22 6 2.4329 -4.8485 1.3737 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2494 32 1 2.5659 -2.2181 3.1186 33 1 -0.6082 -2.3042 4.8281 34 1 2.0530 -5.6834 3.9587 35 1 1.8713 -4.0667 4.6824 36 1 4.2279 -4.8851 4.8072 37 1 4.0874 -3.4103 3.8193 38 1 4.1928 -6.2704 2.7570 39 1 5.5197 -5.0859 2.6929 40 1 4.1339 -3.6903 1.3328 41 1 2.0602 -4.4613 0.4254 42 1 2.1981 -5.9102 1.4498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:10 Heat of formation + Delta-G solvation = -104.584031 kcal Electronic energy + Delta-G solvation = -23296.054302 eV Core-core repulsion = 20082.078129 eV Total energy + Delta-G solvation = -3213.976173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47631 -39.94554 -37.34574 -35.32174 -34.84104 -33.42995 -32.15606 -30.66621 -28.26318 -28.18419 -26.86306 -24.35529 -23.84630 -22.60332 -20.70683 -20.34976 -18.86363 -18.43235 -17.12350 -16.85387 -16.64891 -16.30500 -15.87679 -15.50654 -15.22650 -15.03570 -14.68028 -14.25933 -14.03960 -13.68637 -13.22014 -13.11631 -12.98861 -12.88679 -12.82196 -12.75179 -12.69834 -12.65430 -12.32704 -12.13050 -12.05591 -11.97934 -11.89012 -11.54311 -11.14995 -10.84508 -10.70248 -10.34251 -9.61142 -8.96368 -8.02815 -6.15699 1.34131 1.37541 1.43039 1.76098 2.40929 2.51392 3.18620 3.58629 3.80677 3.91952 3.93842 4.08653 4.17686 4.33545 4.40824 4.59153 4.64333 4.68605 4.72042 4.82177 4.86619 4.88850 4.93281 4.97192 5.01736 5.13925 5.16978 5.21401 5.38543 5.41005 5.46589 5.52359 5.67096 5.78039 5.90281 6.05559 6.24919 6.43055 6.57695 6.81914 7.20381 7.50110 8.10208 8.92726 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.010041 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.533926 B = 2787.934864 C = 4103.225733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 C -0.130 4.130 4 C -0.172 4.172 5 O -0.389 6.389 6 C 0.644 3.356 7 O -0.588 6.588 8 N -0.659 5.659 9 C 0.279 3.721 10 C -0.510 4.510 11 H 0.037 0.963 12 C 0.041 3.959 13 N -0.888 5.888 14 Si 0.929 3.071 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.292 1.292 18 C -0.102 4.102 19 C -0.149 4.149 20 C 0.060 3.940 21 N -0.684 5.684 22 C 0.063 3.937 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.332 0.668 41 H 0.054 0.946 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 4.586 -3.696 9.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.088 3.912 3 C -0.187 4.187 4 C -0.229 4.229 5 O -0.305 6.305 6 C 0.397 3.603 7 O -0.479 6.479 8 N -0.314 5.314 9 C 0.195 3.805 10 C -0.550 4.550 11 H 0.055 0.945 12 C -0.161 4.161 13 N -0.527 5.527 14 Si 0.757 3.243 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.218 1.218 18 C -0.141 4.141 19 C -0.189 4.189 20 C -0.070 4.070 21 N -0.312 5.312 22 C -0.067 4.067 23 H 0.063 0.937 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.773 3.933 -4.434 9.775 hybrid contribution -1.865 0.656 1.201 2.313 sum 5.908 4.589 -3.233 8.150 Atomic orbital electron populations 1.22407 0.95589 1.02965 1.02277 1.22214 0.93561 0.92978 0.82453 1.21828 1.02374 0.90731 1.03749 1.22391 1.01421 1.02073 0.96990 1.86264 1.72125 1.24914 1.47196 1.18219 0.78971 0.79740 0.83401 1.90765 1.41093 1.70576 1.45496 1.45177 1.57213 1.10269 1.18708 1.18577 0.93093 0.76019 0.92814 1.21351 0.92521 1.24886 1.16203 0.94477 1.25323 1.00676 0.94144 0.95949 1.70017 1.36692 1.25328 1.20632 0.86077 0.82997 0.78431 0.76782 1.19378 1.21104 1.21804 1.21565 0.94347 0.99885 0.98304 1.22269 0.95691 1.00587 1.00317 1.22077 0.99291 0.98871 0.86739 1.60806 1.11295 1.22935 1.36138 1.22170 0.86801 0.99150 0.98616 0.93723 0.89089 0.92991 0.90896 0.87901 0.92166 0.92511 0.89313 0.91805 0.78335 0.93532 0.92825 0.92327 0.90523 0.92702 0.91237 0.89159 0.85086 0.92710 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.22 8.37 71.98 0.60 -5.62 16 2 C 0.12 4.14 1.13 -10.79 -0.01 4.13 16 3 C -0.13 -3.08 8.85 71.98 0.64 -2.45 16 4 C -0.17 -5.29 8.37 71.98 0.60 -4.68 16 5 O -0.39 -15.96 9.94 -55.45 -0.55 -16.51 16 6 C 0.64 29.99 7.46 129.79 0.97 30.95 16 7 O -0.59 -30.17 9.21 19.84 0.18 -29.99 16 8 N -0.66 -29.54 3.10 -553.52 -1.72 -31.26 16 9 C 0.28 12.72 0.28 2.91 0.00 12.73 16 10 C -0.51 -27.51 6.53 25.60 0.17 -27.34 16 11 H 0.04 2.12 7.76 -2.91 -0.02 2.10 16 12 C 0.04 2.21 5.22 84.66 0.44 2.65 16 13 N -0.89 -48.00 11.11 21.45 0.24 -47.76 16 14 Si 0.93 44.80 29.54 68.60 2.03 46.83 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 17 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 18 C -0.10 -4.20 4.64 30.67 0.14 -4.05 16 19 C -0.15 -4.71 5.90 30.65 0.18 -4.53 16 20 C 0.06 1.76 6.55 86.32 0.57 2.32 16 21 N -0.68 -23.98 6.85 -514.02 -3.52 -27.51 16 22 C 0.06 2.69 5.12 86.33 0.44 3.13 16 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.05 2.31 5.88 -2.38 -0.01 2.29 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 2.18 5.88 -2.38 -0.01 2.17 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.38 16.58 7.53 -92.71 -0.70 15.88 16 33 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.71 6.82 -2.38 -0.02 2.69 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.73 7.01 -2.39 -0.02 1.71 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.33 11.71 8.30 -89.69 -0.74 10.96 16 41 H 0.05 2.63 6.47 -2.39 -0.02 2.61 16 42 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -61.27 321.17 0.97 -60.30 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.43 Total: 38.67 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 4.74 Total: 7.24 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.00 Total: -106.53 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.37 Total: -46.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.27 0.97 -60.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.285 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds