Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 C 1.52994 * 109.47025 * 239.99989 * 2 1 3 5 5 O 1.45198 * 109.46678 * 119.99765 * 2 1 3 6 6 C 1.34642 * 117.00243 * 60.00296 * 5 2 1 7 7 O 1.21507 * 119.99572 * 359.97438 * 6 5 2 8 8 N 1.34768 * 120.00096 * 179.97438 * 6 5 2 9 9 C 1.47082 * 120.88411 * 359.72477 * 8 6 5 10 10 C 1.53241 * 108.52213 * 231.45641 * 9 8 6 11 11 N 1.46906 * 109.33661 * 306.16857 * 10 9 8 12 12 C 1.46897 * 111.26942 * 63.10671 * 11 10 9 13 13 H 1.08994 * 109.49556 * 56.85709 * 12 11 10 14 14 C 1.53001 * 109.48964 * 176.93491 * 12 11 10 15 15 C 1.50697 * 109.47078 * 294.86464 * 14 12 11 16 16 H 1.08000 * 120.00147 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99961 * 180.02562 * 15 14 12 18 18 N 1.31523 * 120.00126 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00343 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47418 * 59.98914 * 19 17 15 21 21 H 1.48491 * 109.47545 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46553 * 299.99278 * 19 17 15 23 23 C 1.47086 * 120.88221 * 180.02562 * 8 6 5 24 24 H 1.08993 * 109.47102 * 299.99880 * 1 2 3 25 25 H 1.09002 * 109.46756 * 60.00178 * 1 2 3 26 26 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46989 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47240 * 300.00084 * 3 2 1 29 29 H 1.09001 * 109.46964 * 59.99845 * 3 2 1 30 30 H 1.09007 * 109.47318 * 299.99952 * 4 2 1 31 31 H 1.09002 * 109.47490 * 60.00283 * 4 2 1 32 32 H 1.09006 * 109.46954 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.62701 * 351.15799 * 9 8 6 34 34 H 1.08998 * 109.63121 * 111.74474 * 9 8 6 35 35 H 1.08993 * 109.49594 * 186.20872 * 10 9 8 36 36 H 1.08998 * 109.51499 * 66.13549 * 10 9 8 37 37 H 1.00893 * 110.99821 * 298.95192 * 11 10 9 38 38 H 1.08997 * 109.47196 * 54.86629 * 14 12 11 39 39 H 1.09004 * 109.46930 * 174.86523 * 14 12 11 40 40 H 0.96998 * 120.00150 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.62670 * 248.25537 * 23 8 6 42 42 H 1.08999 * 109.62295 * 8.63843 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0679 -2.6656 2.4167 9 6 2.9221 -2.0365 3.4355 10 6 4.1408 -2.9351 3.6713 11 7 3.6875 -4.2947 3.9942 12 6 2.9517 -4.8917 2.8716 13 1 3.5813 -4.8898 1.9819 14 6 2.5659 -6.3303 3.2217 15 6 3.8129 -7.1640 3.3654 16 1 4.7836 -6.7131 3.2210 17 6 3.7146 -8.5028 3.6801 18 7 2.5325 -9.0521 3.8554 19 14 5.2604 -9.5363 3.8589 20 1 6.1089 -8.9747 4.9405 21 1 4.8860 -10.9325 4.1985 22 1 6.0154 -9.5229 2.5801 23 6 1.6848 -4.0735 2.6028 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 3.2510 -1.0585 3.0843 34 1 2.3632 -1.9262 4.3647 35 1 4.7283 -2.5411 4.5005 36 1 4.7542 -2.9606 2.7706 37 1 3.1304 -4.2998 4.8353 38 1 2.0123 -6.3398 4.1605 39 1 1.9425 -6.7426 2.4281 40 1 2.4634 -9.9939 4.0771 41 1 1.0067 -4.1592 3.4519 42 1 1.1924 -4.4409 1.7024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = -103.782620 kcal Electronic energy + Delta-G solvation = -21822.068080 eV Core-core repulsion = 18608.126659 eV Total energy + Delta-G solvation = -3213.941421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97899 -39.95030 -37.81653 -35.87474 -34.97498 -34.11552 -32.94667 -29.29698 -28.37376 -28.28359 -27.47606 -25.44221 -23.74663 -22.74993 -21.58619 -20.38304 -19.00005 -18.36714 -17.67785 -17.32782 -16.58492 -16.17314 -16.10732 -15.74713 -15.57924 -15.34315 -14.78328 -14.58144 -14.45885 -14.03476 -13.65511 -13.38410 -13.26090 -13.11122 -12.95800 -12.86476 -12.65538 -12.61153 -12.48534 -12.38245 -12.32372 -12.14577 -11.92829 -11.40391 -11.34540 -11.21620 -11.07766 -10.48885 -10.26547 -8.94118 -8.10402 -6.16228 1.04824 1.44698 1.47140 1.54789 1.70662 2.48489 2.78620 3.21698 3.41105 3.75427 3.79739 3.91518 3.94883 4.03790 4.13838 4.18465 4.29948 4.48856 4.59726 4.60685 4.72903 4.75655 4.76421 4.81547 4.85212 4.88314 4.94135 5.03403 5.11726 5.27959 5.29907 5.37757 5.44621 5.46567 5.62410 5.87354 6.21572 6.27087 6.41304 6.63957 6.96618 7.22621 7.50082 9.01310 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.003995 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.251420 B = 7007.909601 C = 7240.151749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.361 6.361 6 C 0.648 3.352 7 O -0.598 6.598 8 N -0.596 5.596 9 C 0.076 3.924 10 C 0.048 3.952 11 N -0.676 5.676 12 C 0.104 3.896 13 H 0.054 0.946 14 C 0.038 3.962 15 C -0.505 4.505 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.938 5.938 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.104 3.896 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.344 0.656 38 H 0.004 0.996 39 H -0.005 1.005 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 22.936 -4.180 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.276 6.276 6 C 0.403 3.597 7 O -0.489 6.489 8 N -0.336 5.336 9 C -0.047 4.047 10 C -0.082 4.082 11 N -0.305 5.305 12 C -0.007 4.007 13 H 0.072 0.928 14 C 0.000 4.000 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.020 4.020 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.163 0.837 38 H 0.023 0.977 39 H 0.013 0.987 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.025 22.410 -4.607 22.878 hybrid contribution -0.517 -0.736 0.006 0.900 sum -0.491 21.673 -4.601 22.162 Atomic orbital electron populations 1.22463 0.94071 1.03376 1.03697 1.22465 0.94628 0.92932 0.81398 1.21864 1.02446 0.90087 1.04479 1.22479 1.01560 1.01996 0.97770 1.86286 1.71511 1.22434 1.47358 1.18119 0.78709 0.81122 0.81764 1.90875 1.42862 1.71119 1.44081 1.47160 1.52668 1.11827 1.21965 1.22705 0.92446 0.98198 0.91382 1.22497 0.95745 0.87096 1.02843 1.60382 1.45294 1.19593 1.05271 1.21669 0.91175 0.94122 0.93700 0.92771 1.18940 0.95880 0.89989 0.95175 1.21386 0.93623 0.93875 1.45489 0.92289 1.25859 0.98878 0.99490 0.95723 1.70082 1.24770 1.12740 1.50361 0.85577 0.79807 0.77302 0.78740 1.19331 1.21308 1.19852 1.22367 0.98584 0.78480 1.02557 0.91769 0.88859 0.92616 0.91147 0.87831 0.90919 0.92727 0.88780 0.92100 0.87450 0.89681 0.86751 0.92017 0.83706 0.97738 0.98663 0.93129 0.90566 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.59 1.13 -10.79 -0.01 2.57 16 3 C -0.13 -1.73 8.85 71.98 0.64 -1.10 16 4 C -0.18 -4.02 8.37 71.98 0.60 -3.42 16 5 O -0.36 -9.62 8.57 -55.52 -0.48 -10.09 16 6 C 0.65 21.20 7.75 129.79 1.01 22.20 16 7 O -0.60 -22.85 11.33 19.82 0.22 -22.62 16 8 N -0.60 -18.55 3.01 -948.35 -2.85 -21.40 16 9 C 0.08 1.78 6.59 86.35 0.57 2.35 16 10 C 0.05 1.24 6.70 86.38 0.58 1.82 16 11 N -0.68 -23.41 6.20 -490.81 -3.04 -26.46 16 12 C 0.10 4.24 2.50 44.98 0.11 4.35 16 13 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 14 C 0.04 1.95 4.62 29.85 0.14 2.09 16 15 C -0.51 -28.45 8.84 25.60 0.23 -28.22 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.94 -57.07 13.29 21.45 0.28 -56.78 16 19 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.10 3.74 5.86 86.33 0.51 4.25 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.58 5.88 -2.39 -0.01 1.56 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 1.62 5.88 -2.38 -0.01 1.61 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.11 2.16 6.98 -2.39 -0.02 2.14 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.34 11.23 8.78 -89.70 -0.79 10.45 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.08 3.04 7.05 -2.39 -0.02 3.02 16 Total: -1.00 -68.86 332.92 1.80 -67.07 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.21 Total: 19.12 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.43 Total: 4.02 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.61 Total: -104.65 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.25 Total: -32.72 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.86 1.80 -67.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.717 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds