Wall clock time and date at job start Mon Mar 30 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47070 * 2 1 4 4 C 1.50702 * 109.47125 * 239.99992 * 2 1 3 5 5 H 1.08004 * 119.99922 * 239.99573 * 4 2 1 6 6 C 1.37876 * 120.00262 * 59.99979 * 4 2 1 7 7 N 1.31515 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47179 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46964 * 120.00095 * 8 6 4 11 11 H 1.48498 * 109.47039 * 239.99784 * 8 6 4 12 12 C 1.52998 * 109.47150 * 119.99796 * 2 1 3 13 13 N 1.46495 * 109.47265 * 299.99903 * 12 2 1 14 14 C 1.34776 * 120.00358 * 179.97438 * 13 12 2 15 15 O 1.21289 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00341 * 179.97438 * 14 13 12 17 17 C 1.53004 * 110.82954 * 56.35603 * 16 14 13 18 18 C 1.54989 * 110.90885 * 292.70755 * 16 14 13 19 19 O 1.44383 * 103.48976 * 278.82225 * 18 16 14 20 20 C 1.43739 * 106.97729 * 319.94114 * 19 18 16 21 21 C 1.54100 * 107.29489 * 26.51040 * 20 19 18 22 22 H 1.09002 * 110.48859 * 239.29494 * 21 20 19 23 23 N 1.46903 * 110.48842 * 116.78025 * 21 20 19 24 24 H 1.08999 * 109.47013 * 300.00058 * 1 2 3 25 25 H 1.09004 * 109.46819 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46780 * 299.99700 * 3 2 1 29 29 H 1.08994 * 109.46934 * 59.99759 * 3 2 1 30 30 H 0.97003 * 120.00232 * 180.02562 * 7 6 4 31 31 H 1.09011 * 109.47078 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.46936 * 60.00205 * 12 2 1 33 33 H 0.97000 * 119.99918 * 0.02562 * 13 12 2 34 34 H 1.08994 * 109.47027 * 183.64594 * 17 16 14 35 35 H 1.08997 * 109.47032 * 303.64349 * 17 16 14 36 36 H 1.09004 * 109.47001 * 63.64589 * 17 16 14 37 37 H 1.08999 * 110.62077 * 160.32704 * 18 16 14 38 38 H 1.08999 * 110.75439 * 37.39151 * 18 16 14 39 39 H 1.09005 * 109.87679 * 267.08788 * 20 19 18 40 40 H 1.08998 * 110.00208 * 146.00696 * 20 19 18 41 41 H 1.00897 * 110.99897 * 63.24254 * 23 21 20 42 42 H 1.00900 * 110.99836 * 187.20654 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2877 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7808 16 6 1.3751 0.2195 4.8999 17 6 -0.1517 0.3180 4.8867 18 6 2.0188 1.6234 5.0289 19 8 3.3098 1.3495 5.6145 20 6 3.1127 0.3274 6.6057 21 6 1.8721 -0.4846 6.1860 22 1 1.1085 -0.4436 6.9628 23 7 2.2412 -1.8780 5.9027 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 0.7089 1.1614 -3.4844 31 1 3.1301 -0.7216 1.2490 32 1 1.6767 -1.7488 1.2492 33 1 0.9938 0.7579 2.3564 34 1 -0.4863 0.8910 5.7514 35 1 -0.4757 0.8165 3.9731 36 1 -0.5808 -0.6833 4.9261 37 1 1.4260 2.2586 5.6870 38 1 2.1324 2.0878 4.0493 39 1 2.9441 0.7843 7.5809 40 1 3.9854 -0.3244 6.6479 41 1 2.5956 -2.3336 6.7303 42 1 1.4609 -2.3872 5.5156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316235802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:12 Heat of formation + Delta-G solvation = -67.792337 kcal Electronic energy + Delta-G solvation = -22336.757815 eV Core-core repulsion = 19124.377050 eV Total energy + Delta-G solvation = -3212.380765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57510 -38.10264 -36.21010 -34.34063 -33.48447 -32.21404 -30.52517 -27.73275 -26.44859 -25.69281 -25.65286 -24.96817 -22.88187 -21.40477 -19.24433 -18.68699 -17.17396 -16.27407 -15.89525 -15.68344 -15.40207 -14.86546 -14.66232 -14.39021 -14.31840 -13.82294 -13.20503 -13.11085 -12.89948 -12.70045 -12.21566 -12.07847 -12.01078 -11.74638 -11.41145 -11.16353 -11.12516 -10.86604 -10.80950 -10.62985 -10.33594 -10.16949 -9.75783 -9.58590 -9.41940 -9.17394 -8.74378 -8.38689 -8.14760 -7.99596 -5.99236 -4.08759 3.19620 3.29181 3.37718 3.42678 3.78803 3.93473 4.20432 4.36769 4.43810 4.70963 4.95971 4.99310 5.13504 5.21557 5.27635 5.41002 5.51017 5.56162 5.68921 5.72930 5.80232 5.94482 6.32161 6.41129 6.56038 6.75987 6.85411 6.87119 6.99059 7.06862 7.15758 7.24857 7.41916 7.54643 7.59289 7.72870 8.04689 8.14917 8.28584 8.43328 8.90559 8.98569 9.56939 11.02178 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.004590 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.904600 B = 6098.850585 C = 6250.679685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.137 3.863 13 N -0.723 5.723 14 C 0.515 3.485 15 O -0.494 6.494 16 C -0.118 4.118 17 C -0.137 4.137 18 C 0.061 3.939 19 O -0.367 6.367 20 C 0.055 3.945 21 C 0.079 3.921 22 H 0.048 0.952 23 N -0.798 5.798 24 H 0.005 0.995 25 H 0.084 0.916 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.005 0.995 30 H 0.258 0.742 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.391 0.609 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.325 0.675 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 1.417 16.843 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.014 3.986 13 N -0.376 5.376 14 C 0.297 3.703 15 O -0.367 6.367 16 C -0.122 4.122 17 C -0.194 4.194 18 C -0.016 4.016 19 O -0.285 6.285 20 C -0.023 4.023 21 C -0.034 4.034 22 H 0.065 0.935 23 N -0.330 5.330 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.226 0.774 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.994 1.189 16.196 16.362 hybrid contribution -0.993 -0.349 -0.138 1.062 sum -2.987 0.841 16.058 16.356 Atomic orbital electron populations 1.21813 0.97880 0.99043 0.99932 1.18356 0.92686 0.92761 0.90734 1.21818 0.98632 0.98375 0.99921 1.21040 1.31204 1.11998 0.89915 0.92437 1.24879 0.94912 0.94935 0.98834 1.69816 1.36885 1.22822 1.23032 0.86529 0.78617 0.79783 0.83044 1.19767 1.21119 1.21081 1.21610 0.98007 0.95514 0.83443 1.46333 1.53336 1.31938 1.05977 1.19769 0.81538 0.85284 0.83659 1.90770 1.35589 1.24902 1.85410 1.22502 0.97290 0.96981 0.95471 1.21753 0.91838 1.02833 1.03003 1.23605 0.84557 0.93875 0.99598 1.88919 1.28263 1.56873 1.54457 1.23216 0.98771 0.89410 0.90887 1.22585 0.95540 0.91463 0.93836 0.93484 1.58975 1.40308 1.00617 1.33125 0.97615 0.89701 0.95542 0.95431 0.89695 0.97605 0.93133 0.92975 0.93074 0.77403 0.91604 0.91171 0.91810 0.91366 0.88308 0.92669 0.88861 0.86184 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.14 2.95 4.50 -4.05 -0.02 2.93 16 13 N -0.72 -12.92 4.78 -60.30 -0.29 -13.21 16 14 C 0.51 8.88 6.38 -10.99 -0.07 8.81 16 15 O -0.49 -10.13 13.39 5.55 0.07 -10.05 16 16 C -0.12 -1.50 0.79 -153.65 -0.12 -1.63 16 17 C -0.14 -1.36 8.45 37.16 0.31 -1.05 16 18 C 0.06 0.76 6.62 38.21 0.25 1.01 16 19 O -0.37 -5.47 11.50 -35.23 -0.41 -5.88 16 20 C 0.05 0.66 7.50 37.73 0.28 0.94 16 21 C 0.08 0.91 3.60 -66.18 -0.24 0.67 16 22 H 0.05 0.44 7.86 -51.93 -0.41 0.03 16 23 N -0.80 -10.16 6.26 -3.37 -0.02 -10.19 16 24 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 2.14 6.07 -51.92 -0.32 1.82 16 29 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.39 6.37 5.41 -40.82 -0.22 6.15 16 34 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.70 7.38 -51.93 -0.38 0.32 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.10 1.27 8.00 -51.93 -0.42 0.85 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.20 7.93 -51.93 -0.41 0.79 16 41 H 0.33 3.31 9.07 -39.29 -0.36 2.95 16 42 H 0.34 4.40 8.43 -39.29 -0.33 4.07 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -29.84 324.76 -6.48 -36.31 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.78 Total: 9.75 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.56 Total: -4.29 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.21 Total: -46.61 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.33 Total: -15.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.84 -6.48 -36.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316235802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.479 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds