Wall clock time and date at job start Mon Mar 30 2020 04:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47070 * 2 1 4 4 C 1.50702 * 109.47125 * 239.99992 * 2 1 3 5 5 H 1.08004 * 119.99922 * 239.99573 * 4 2 1 6 6 C 1.37876 * 120.00262 * 59.99979 * 4 2 1 7 7 N 1.31515 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47179 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46964 * 120.00095 * 8 6 4 11 11 H 1.48498 * 109.47039 * 239.99784 * 8 6 4 12 12 C 1.52998 * 109.47150 * 119.99796 * 2 1 3 13 13 N 1.46495 * 109.47265 * 299.99903 * 12 2 1 14 14 C 1.34776 * 120.00358 * 179.97438 * 13 12 2 15 15 O 1.21289 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00341 * 179.97438 * 14 13 12 17 17 C 1.53004 * 110.82954 * 56.35603 * 16 14 13 18 18 C 1.54989 * 110.90885 * 292.70755 * 16 14 13 19 19 O 1.44383 * 103.48976 * 278.82225 * 18 16 14 20 20 C 1.43739 * 106.97729 * 319.94114 * 19 18 16 21 21 C 1.54100 * 107.29489 * 26.51040 * 20 19 18 22 22 H 1.09002 * 110.48859 * 239.29494 * 21 20 19 23 23 N 1.46903 * 110.48842 * 116.78025 * 21 20 19 24 24 H 1.08999 * 109.47013 * 300.00058 * 1 2 3 25 25 H 1.09004 * 109.46819 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46780 * 299.99700 * 3 2 1 29 29 H 1.08994 * 109.46934 * 59.99759 * 3 2 1 30 30 H 0.97003 * 120.00232 * 180.02562 * 7 6 4 31 31 H 1.09011 * 109.47078 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.46936 * 60.00205 * 12 2 1 33 33 H 0.97000 * 119.99918 * 0.02562 * 13 12 2 34 34 H 1.08994 * 109.47027 * 183.64594 * 17 16 14 35 35 H 1.08997 * 109.47032 * 303.64349 * 17 16 14 36 36 H 1.09004 * 109.47001 * 63.64589 * 17 16 14 37 37 H 1.08999 * 110.62077 * 160.32704 * 18 16 14 38 38 H 1.08999 * 110.75439 * 37.39151 * 18 16 14 39 39 H 1.09005 * 109.87679 * 267.08788 * 20 19 18 40 40 H 1.08998 * 110.00208 * 146.00696 * 20 19 18 41 41 H 1.00897 * 110.99897 * 63.24254 * 23 21 20 42 42 H 1.00900 * 110.99836 * 187.20654 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2877 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7808 16 6 1.3751 0.2195 4.8999 17 6 -0.1517 0.3180 4.8867 18 6 2.0188 1.6234 5.0289 19 8 3.3098 1.3495 5.6145 20 6 3.1127 0.3274 6.6057 21 6 1.8721 -0.4846 6.1860 22 1 1.1085 -0.4436 6.9628 23 7 2.2412 -1.8780 5.9027 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 0.7089 1.1614 -3.4844 31 1 3.1301 -0.7216 1.2490 32 1 1.6767 -1.7488 1.2492 33 1 0.9938 0.7579 2.3564 34 1 -0.4863 0.8910 5.7514 35 1 -0.4757 0.8165 3.9731 36 1 -0.5808 -0.6833 4.9261 37 1 1.4260 2.2586 5.6870 38 1 2.1324 2.0878 4.0493 39 1 2.9441 0.7843 7.5809 40 1 3.9854 -0.3244 6.6479 41 1 2.5956 -2.3336 6.7303 42 1 1.4609 -2.3872 5.5156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316235802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:11 Heat of formation + Delta-G solvation = -89.812153 kcal Electronic energy + Delta-G solvation = -22337.712666 eV Core-core repulsion = 19124.377050 eV Total energy + Delta-G solvation = -3213.335616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69251 -39.46032 -37.90368 -35.38478 -35.01004 -33.54164 -32.19776 -28.65627 -27.56003 -27.49012 -27.28254 -26.79720 -24.02159 -22.49550 -20.57469 -20.48162 -18.36530 -17.76619 -17.24554 -16.88212 -16.66222 -16.38980 -15.95374 -15.81279 -15.60410 -15.01098 -14.73324 -14.40643 -14.24120 -13.95246 -13.87654 -13.28012 -13.16830 -13.03487 -12.90356 -12.72150 -12.67042 -12.54996 -12.24786 -12.13101 -12.06103 -11.76346 -11.46035 -11.21073 -10.75879 -10.68432 -10.46527 -10.38690 -9.73614 -9.01011 -8.01604 -6.16984 1.41034 1.45141 1.54755 1.90120 2.37902 2.53485 2.97820 3.21770 3.28337 3.45866 3.79139 3.99076 4.12610 4.18440 4.39274 4.47211 4.55560 4.58747 4.67937 4.73368 4.74413 4.81344 4.87940 4.91186 5.04561 5.07158 5.15098 5.19900 5.22148 5.42101 5.67978 5.68558 5.71809 5.85251 6.16685 6.23704 6.37193 6.45377 6.67748 6.87341 6.88282 7.50629 7.59762 8.97383 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.004590 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.904600 B = 6098.850585 C = 6250.679685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.155 3.845 13 N -0.718 5.718 14 C 0.508 3.492 15 O -0.531 6.531 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.058 3.942 19 O -0.401 6.401 20 C 0.050 3.950 21 C 0.080 3.920 22 H 0.083 0.917 23 N -0.821 5.821 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.013 0.987 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.401 0.599 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.337 0.663 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 2.359 18.596 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.031 3.969 13 N -0.372 5.372 14 C 0.294 3.706 15 O -0.406 6.406 16 C -0.116 4.116 17 C -0.191 4.191 18 C -0.019 4.019 19 O -0.320 6.320 20 C -0.027 4.027 21 C -0.033 4.033 22 H 0.101 0.899 23 N -0.354 5.354 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.238 0.762 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.152 0.848 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.325 2.150 17.970 18.401 hybrid contribution -0.540 -0.657 -0.655 1.074 sum -3.865 1.493 17.315 17.804 Atomic orbital electron populations 1.21634 0.96908 0.98619 1.00343 1.18353 0.93376 0.92866 0.90361 1.21658 0.97687 0.98044 1.00306 1.21301 1.31532 1.12036 0.91711 0.94075 1.25436 0.95167 0.95608 1.00894 1.69911 1.37083 1.23265 1.23502 0.85722 0.78157 0.78705 0.80306 1.20193 1.20554 1.20737 1.21102 0.96306 0.94885 0.84585 1.46185 1.53579 1.32076 1.05335 1.20684 0.80524 0.84887 0.84511 1.90758 1.37113 1.26699 1.86059 1.22495 0.99180 0.96849 0.93118 1.21792 0.89243 1.03443 1.04601 1.23800 0.84112 0.93860 1.00081 1.88879 1.30025 1.57641 1.55453 1.23378 0.98453 0.89109 0.91767 1.22703 0.96128 0.90463 0.93960 0.89912 1.58884 1.40710 1.01529 1.34303 0.94361 0.91978 0.96325 0.96735 0.91854 0.94518 0.93041 0.95507 0.94723 0.76229 0.88246 0.91199 0.91942 0.87493 0.89311 0.89453 0.90593 0.84838 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 2 C 0.05 2.40 0.50 -52.92 -0.03 2.37 16 3 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 4 C -0.53 -28.44 8.01 25.60 0.21 -28.24 16 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -48.21 9.35 21.45 0.20 -48.01 16 8 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.16 6.82 4.50 86.38 0.39 7.21 16 13 N -0.72 -25.12 4.78 -463.06 -2.22 -27.33 16 14 C 0.51 17.13 6.38 87.66 0.56 17.69 16 15 O -0.53 -21.97 13.39 -3.06 -0.04 -22.01 16 16 C -0.11 -2.56 0.79 -51.63 -0.04 -2.60 16 17 C -0.13 -2.14 8.45 71.98 0.61 -1.53 16 18 C 0.06 1.27 6.62 72.66 0.48 1.75 16 19 O -0.40 -11.24 11.50 -148.98 -1.71 -12.95 16 20 C 0.05 1.10 7.50 72.35 0.54 1.64 16 21 C 0.08 1.63 3.60 45.91 0.17 1.79 16 22 H 0.08 1.15 7.86 -2.39 -0.02 1.13 16 23 N -0.82 -19.97 6.26 -164.56 -1.03 -21.00 16 24 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 25 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.40 12.28 5.41 -92.71 -0.50 11.78 16 34 H 0.10 0.97 8.09 -2.39 -0.02 0.96 16 35 H 0.07 1.14 7.38 -2.39 -0.02 1.12 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.11 1.52 8.01 -2.39 -0.02 1.51 16 38 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.08 1.89 7.93 -2.39 -0.02 1.88 16 41 H 0.34 6.49 9.07 -89.70 -0.81 5.68 16 42 H 0.34 8.44 8.43 -89.69 -0.76 7.68 16 Total: -1.00 -65.71 324.76 0.67 -65.03 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -1.03 Total: 28.46 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.48 Total: -7.40 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.05 Total: -96.35 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.75 Total: -34.97 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.71 0.67 -65.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316235802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.777 kcal (2) G-P(sol) polarization free energy of solvation -65.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds