Wall clock time and date at job start Mon Mar 30 2020 04:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99732 * 2 1 4 4 C 1.53003 * 109.46620 * 184.85260 * 3 2 1 5 5 N 1.46500 * 109.47437 * 55.93128 * 4 3 2 6 6 C 1.37193 * 119.99513 * 61.29976 * 5 4 3 7 7 H 1.07992 * 120.00508 * 37.87986 * 6 5 4 8 8 C 1.38884 * 119.99404 * 217.87758 * 6 5 4 9 9 N 1.31479 * 120.00040 * 20.86690 * 8 6 5 10 10 Si 1.86793 * 120.00000 * 200.58784 * 8 6 5 11 11 H 1.48502 * 109.46969 * 60.00416 * 10 8 6 12 12 H 1.48498 * 109.47449 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47338 * 300.00175 * 10 8 6 14 14 C 1.34776 * 119.99859 * 241.29452 * 5 4 3 15 15 O 1.21581 * 119.99601 * 194.83149 * 14 5 4 16 16 N 1.34772 * 120.00200 * 14.83571 * 14 5 4 17 17 C 1.46928 * 120.62994 * 16.39037 * 16 14 5 18 18 C 1.53618 * 108.54513 * 126.36894 * 17 16 14 19 19 C 1.53045 * 109.23900 * 54.85559 * 18 17 16 20 20 C 1.53007 * 109.44632 * 178.49910 * 19 18 17 21 21 C 1.53034 * 109.53789 * 298.50938 * 19 18 17 22 22 C 1.46918 * 120.63134 * 196.66991 * 16 14 5 23 23 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46632 * 299.99695 * 1 2 3 25 25 H 1.09000 * 109.47515 * 59.99930 * 1 2 3 26 26 H 1.08994 * 109.47299 * 64.85714 * 3 2 1 27 27 H 1.08997 * 109.47374 * 304.84593 * 3 2 1 28 28 H 1.08999 * 109.47175 * 295.93039 * 4 3 2 29 29 H 1.09001 * 109.46748 * 175.93152 * 4 3 2 30 30 H 0.97001 * 120.00296 * 184.96096 * 9 8 6 31 31 H 1.09003 * 109.58221 * 246.20315 * 17 16 14 32 32 H 1.08996 * 109.59014 * 6.62120 * 17 16 14 33 33 H 1.09003 * 109.63433 * 294.86478 * 18 17 16 34 34 H 1.09000 * 109.43248 * 174.72059 * 18 17 16 35 35 H 1.08997 * 109.46465 * 58.53643 * 19 18 17 36 36 H 1.09000 * 109.47260 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.46978 * 300.06096 * 20 19 18 38 38 H 1.08996 * 109.47219 * 60.06129 * 20 19 18 39 39 H 1.09002 * 109.50072 * 301.41512 * 21 19 18 40 40 H 1.08999 * 109.49873 * 181.31876 * 21 19 18 41 41 H 1.08999 * 109.59082 * 353.36915 * 22 16 14 42 42 H 1.08998 * 109.59028 * 113.65620 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1220 5 7 3.8657 0.4172 -1.3228 6 6 3.4912 0.8783 -2.5595 7 1 3.5292 1.9356 -2.7759 8 6 3.0634 -0.0149 -3.5332 9 7 2.6251 -1.2051 -3.1865 10 14 3.1032 0.4775 -5.3346 11 1 4.4985 0.7974 -5.7296 12 1 2.5979 -0.6445 -6.1658 13 1 2.2443 1.6713 -5.5406 14 6 4.5418 -0.7435 -1.2126 15 8 5.0537 -1.2444 -2.1950 16 7 4.6503 -1.3488 -0.0134 17 6 3.7638 -0.9747 1.0970 18 6 3.0869 -2.2459 1.6315 19 6 4.1609 -3.2710 2.0030 20 6 3.4932 -4.5251 2.5710 21 6 4.9668 -3.6427 0.7563 22 6 5.6613 -2.3911 0.2103 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.7591 1.8150 0.9302 27 1 1.6216 1.8762 -0.8434 28 1 3.9272 0.6790 0.7572 29 1 3.9682 2.1824 -0.1948 30 1 2.3943 -1.8546 -3.8689 31 1 4.3484 -0.5077 1.8898 32 1 3.0056 -0.2776 0.7404 33 1 2.4349 -2.6638 0.8644 34 1 2.4983 -1.9992 2.5151 35 1 4.8273 -2.8435 2.7522 36 1 4.2578 -5.2553 2.8362 37 1 2.9192 -4.2605 3.4590 38 1 2.8272 -4.9531 1.8219 39 1 4.2971 -4.0474 -0.0025 40 1 5.7161 -4.3901 1.0169 41 1 6.1554 -2.6291 -0.7317 42 1 6.3988 -2.0365 0.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316528417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:19 Heat of formation + Delta-G solvation = -9.607071 kcal Electronic energy + Delta-G solvation = -23394.978720 eV Core-core repulsion = 20185.121057 eV Total energy + Delta-G solvation = -3209.857663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72228 -37.32383 -36.74274 -34.22288 -33.23378 -31.49188 -30.24942 -28.85322 -27.48060 -25.68020 -24.59933 -23.13014 -22.52113 -21.11709 -19.95993 -19.09540 -16.77993 -16.32732 -15.67973 -15.04283 -14.80780 -14.52157 -14.31312 -14.10455 -13.87688 -13.71800 -13.19471 -13.07757 -12.64066 -12.37016 -12.22745 -11.66950 -11.55826 -11.46049 -11.23987 -11.17353 -10.98459 -10.69392 -10.59516 -10.50319 -10.32903 -10.13155 -10.06413 -9.85000 -9.34374 -8.73000 -8.56307 -8.14072 -7.39838 -7.03417 -5.88539 -3.56403 3.40978 3.49030 3.53817 4.05712 4.36602 4.60209 4.85360 5.16929 5.19139 5.26870 5.39178 5.52399 5.65292 5.71735 5.77908 5.82575 5.85058 5.93371 5.96162 6.00376 6.05491 6.07928 6.12064 6.18543 6.22117 6.33388 6.40580 6.43633 6.53159 6.57056 6.66380 6.70359 6.82754 6.96671 7.58031 7.81209 7.94797 8.11640 8.69812 9.34240 9.59679 9.93630 10.66285 11.19212 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.008230 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.608557 B = 3401.488207 C = 4049.855494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.050 3.950 4 C 0.068 3.932 5 N -0.469 5.469 6 C -0.331 4.331 7 H 0.073 0.927 8 C 0.072 3.928 9 N -0.828 5.828 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.708 3.292 15 O -0.584 6.584 16 N -0.641 5.641 17 C 0.078 3.922 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.144 4.144 21 C -0.126 4.126 22 C 0.137 3.863 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.258 0.742 31 H 0.038 0.962 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -0.356 12.526 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C -0.028 4.028 4 C -0.056 4.056 5 N -0.195 5.195 6 C -0.458 4.458 7 H 0.091 0.909 8 C -0.138 4.138 9 N -0.461 5.461 10 Si 0.728 3.272 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.413 3.587 15 O -0.461 6.461 16 N -0.382 5.382 17 C -0.045 4.045 18 C -0.158 4.158 19 C -0.110 4.110 20 C -0.201 4.201 21 C -0.164 4.164 22 C 0.012 3.988 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.337 -0.927 11.854 11.965 hybrid contribution -0.386 0.317 -0.826 0.966 sum -1.723 -0.610 11.027 11.178 Atomic orbital electron populations 1.22576 0.82909 1.01705 0.98581 1.87967 1.17892 1.26861 1.94719 1.22835 0.95799 0.85460 0.98719 1.22654 0.92342 0.97605 0.92972 1.42285 1.53204 1.19939 1.04068 1.18602 1.45856 0.93130 0.88258 0.90913 1.25021 0.93615 0.96019 0.99108 1.69955 1.36893 1.05868 1.33422 0.86492 0.78238 0.77362 0.85131 1.20278 1.21552 1.20778 1.15627 0.79854 0.81834 0.81402 1.90669 1.53106 1.66239 1.36106 1.47094 1.37900 1.41339 1.11892 1.22910 0.94821 0.97798 0.88937 1.21976 0.97394 0.96138 1.00250 1.21128 0.97298 0.95737 0.96859 1.21823 1.00259 0.97632 1.00412 1.21942 0.99325 0.97713 0.97429 1.21107 0.89953 0.87152 1.00555 0.90657 0.95664 0.94468 0.94798 0.92436 0.88131 0.92843 0.93169 0.94402 0.83714 0.91254 0.92514 0.92003 0.93282 0.93180 0.92822 0.91489 0.92229 0.89833 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.75 16 2 O -0.36 -7.12 8.35 -35.23 -0.29 -7.41 16 3 C 0.05 0.92 5.56 37.16 0.21 1.12 16 4 C 0.07 1.37 5.52 -4.04 -0.02 1.35 16 5 N -0.47 -12.12 2.46 -121.93 -0.30 -12.42 16 6 C -0.33 -9.32 8.54 -14.91 -0.13 -9.45 16 7 H 0.07 1.97 7.91 -52.49 -0.42 1.56 16 8 C 0.07 2.08 4.34 -17.46 -0.08 2.01 16 9 N -0.83 -25.16 11.83 55.49 0.66 -24.50 16 10 Si 0.90 22.70 29.60 -169.99 -5.03 17.66 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.71 19.12 6.88 -86.92 -0.60 18.52 16 15 O -0.58 -18.26 14.08 5.29 0.07 -18.19 16 16 N -0.64 -14.08 2.93 -196.71 -0.58 -14.66 16 17 C 0.08 1.42 4.26 -3.49 -0.01 1.41 16 18 C -0.12 -1.95 5.38 -26.39 -0.14 -2.09 16 19 C -0.09 -1.33 2.68 -90.58 -0.24 -1.57 16 20 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 21 C -0.13 -2.05 5.36 -26.61 -0.14 -2.20 16 22 C 0.14 2.61 6.44 -3.71 -0.02 2.59 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.14 7.81 -51.93 -0.41 0.73 16 28 H 0.10 1.85 3.49 -74.85 -0.26 1.59 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 31 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.15 2.80 1.09 -54.81 -0.06 2.74 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.78 7.07 -51.93 -0.37 1.42 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -34.45 323.04 -7.29 -41.74 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.96 Total: 0.91 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 0.27 Total: 12.00 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.22 Total: -51.58 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.22 Total: -25.60 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.45 -7.29 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316528417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.131 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds