Wall clock time and date at job start Mon Mar 30 2020 04:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99732 * 2 1 4 4 C 1.53003 * 109.46620 * 184.85260 * 3 2 1 5 5 N 1.46500 * 109.47437 * 55.93128 * 4 3 2 6 6 C 1.37193 * 119.99513 * 61.29976 * 5 4 3 7 7 H 1.07992 * 120.00508 * 37.87986 * 6 5 4 8 8 C 1.38884 * 119.99404 * 217.87758 * 6 5 4 9 9 N 1.31479 * 120.00040 * 20.86690 * 8 6 5 10 10 Si 1.86793 * 120.00000 * 200.58784 * 8 6 5 11 11 H 1.48502 * 109.46969 * 60.00416 * 10 8 6 12 12 H 1.48498 * 109.47449 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47338 * 300.00175 * 10 8 6 14 14 C 1.34776 * 119.99859 * 241.29452 * 5 4 3 15 15 O 1.21581 * 119.99601 * 194.83149 * 14 5 4 16 16 N 1.34772 * 120.00200 * 14.83571 * 14 5 4 17 17 C 1.46928 * 120.62994 * 16.39037 * 16 14 5 18 18 C 1.53618 * 108.54513 * 126.36894 * 17 16 14 19 19 C 1.53045 * 109.23900 * 54.85559 * 18 17 16 20 20 C 1.53007 * 109.44632 * 178.49910 * 19 18 17 21 21 C 1.53034 * 109.53789 * 298.50938 * 19 18 17 22 22 C 1.46918 * 120.63134 * 196.66991 * 16 14 5 23 23 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46632 * 299.99695 * 1 2 3 25 25 H 1.09000 * 109.47515 * 59.99930 * 1 2 3 26 26 H 1.08994 * 109.47299 * 64.85714 * 3 2 1 27 27 H 1.08997 * 109.47374 * 304.84593 * 3 2 1 28 28 H 1.08999 * 109.47175 * 295.93039 * 4 3 2 29 29 H 1.09001 * 109.46748 * 175.93152 * 4 3 2 30 30 H 0.97001 * 120.00296 * 184.96096 * 9 8 6 31 31 H 1.09003 * 109.58221 * 246.20315 * 17 16 14 32 32 H 1.08996 * 109.59014 * 6.62120 * 17 16 14 33 33 H 1.09003 * 109.63433 * 294.86478 * 18 17 16 34 34 H 1.09000 * 109.43248 * 174.72059 * 18 17 16 35 35 H 1.08997 * 109.46465 * 58.53643 * 19 18 17 36 36 H 1.09000 * 109.47260 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.46978 * 300.06096 * 20 19 18 38 38 H 1.08996 * 109.47219 * 60.06129 * 20 19 18 39 39 H 1.09002 * 109.50072 * 301.41512 * 21 19 18 40 40 H 1.08999 * 109.49873 * 181.31876 * 21 19 18 41 41 H 1.08999 * 109.59082 * 353.36915 * 22 16 14 42 42 H 1.08998 * 109.59028 * 113.65620 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1867 -0.1220 5 7 3.8657 0.4172 -1.3228 6 6 3.4912 0.8783 -2.5595 7 1 3.5292 1.9356 -2.7759 8 6 3.0634 -0.0149 -3.5332 9 7 2.6251 -1.2051 -3.1865 10 14 3.1032 0.4775 -5.3346 11 1 4.4985 0.7974 -5.7296 12 1 2.5979 -0.6445 -6.1658 13 1 2.2443 1.6713 -5.5406 14 6 4.5418 -0.7435 -1.2126 15 8 5.0537 -1.2444 -2.1950 16 7 4.6503 -1.3488 -0.0134 17 6 3.7638 -0.9747 1.0970 18 6 3.0869 -2.2459 1.6315 19 6 4.1609 -3.2710 2.0030 20 6 3.4932 -4.5251 2.5710 21 6 4.9668 -3.6427 0.7563 22 6 5.6613 -2.3911 0.2103 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.7591 1.8150 0.9302 27 1 1.6216 1.8762 -0.8434 28 1 3.9272 0.6790 0.7572 29 1 3.9682 2.1824 -0.1948 30 1 2.3943 -1.8546 -3.8689 31 1 4.3484 -0.5077 1.8898 32 1 3.0056 -0.2776 0.7404 33 1 2.4349 -2.6638 0.8644 34 1 2.4983 -1.9992 2.5151 35 1 4.8273 -2.8435 2.7522 36 1 4.2578 -5.2553 2.8362 37 1 2.9192 -4.2605 3.4590 38 1 2.8272 -4.9531 1.8219 39 1 4.2971 -4.0474 -0.0025 40 1 5.7161 -4.3901 1.0169 41 1 6.1554 -2.6291 -0.7317 42 1 6.3988 -2.0365 0.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316528417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:19 Heat of formation + Delta-G solvation = -32.820762 kcal Electronic energy + Delta-G solvation = -23395.985341 eV Core-core repulsion = 20185.121057 eV Total energy + Delta-G solvation = -3210.864284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42307 -38.76377 -38.41589 -36.11374 -34.87310 -33.40396 -31.77634 -30.49186 -28.86396 -27.10968 -26.48562 -24.55944 -24.04580 -22.62992 -21.64090 -20.61740 -18.70610 -17.95702 -17.27343 -16.81192 -16.45971 -16.20878 -16.05976 -15.44034 -15.36082 -15.06792 -14.96538 -14.51806 -14.22499 -13.96335 -13.70542 -13.35331 -13.00865 -12.94276 -12.75761 -12.69976 -12.61537 -12.45054 -12.30191 -12.04454 -11.94888 -11.84969 -11.44207 -11.17853 -10.88607 -10.68219 -10.24636 -10.03267 -9.20817 -9.00877 -8.05622 -5.74516 1.36815 1.46151 1.49807 2.24968 2.59418 2.89329 3.01054 3.45152 3.67685 3.95156 4.02293 4.03900 4.23273 4.38536 4.42851 4.49354 4.55790 4.60738 4.63287 4.69244 4.75305 4.81001 4.89225 4.92058 4.94658 5.00885 5.05575 5.11166 5.18677 5.24478 5.33224 5.39588 5.46035 5.53603 5.67049 6.00987 6.26411 6.57435 6.65043 7.24230 7.55047 7.94657 8.63550 9.00790 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.008230 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.608557 B = 3401.488207 C = 4049.855494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.055 3.945 4 C 0.061 3.939 5 N -0.483 5.483 6 C -0.337 4.337 7 H 0.078 0.922 8 C 0.021 3.979 9 N -0.861 5.861 10 Si 0.956 3.044 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.257 1.257 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.642 5.642 17 C 0.066 3.934 18 C -0.111 4.111 19 C -0.086 4.086 20 C -0.139 4.139 21 C -0.118 4.118 22 C 0.131 3.869 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.248 0.752 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 0.500 15.653 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.305 6.305 3 C -0.022 4.022 4 C -0.062 4.062 5 N -0.208 5.208 6 C -0.465 4.465 7 H 0.096 0.904 8 C -0.185 4.185 9 N -0.497 5.497 10 Si 0.782 3.218 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.182 1.182 14 C 0.400 3.600 15 O -0.526 6.526 16 N -0.383 5.383 17 C -0.055 4.055 18 C -0.150 4.150 19 C -0.105 4.105 20 C -0.196 4.196 21 C -0.157 4.157 22 C 0.007 3.993 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.140 0.860 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.547 -0.034 15.043 15.122 hybrid contribution -0.289 0.096 -1.709 1.736 sum -1.836 0.063 13.334 13.460 Atomic orbital electron populations 1.22678 0.81354 1.02098 0.99718 1.87933 1.19719 1.27873 1.94986 1.22800 0.94150 0.85052 1.00237 1.22954 0.94154 0.97674 0.91377 1.42422 1.53024 1.20123 1.05280 1.18902 1.44418 0.93296 0.89859 0.90439 1.25800 0.93761 0.96140 1.02779 1.70093 1.38967 1.06889 1.33750 0.85607 0.77838 0.77657 0.80694 1.21258 1.22039 1.18171 1.16022 0.79454 0.82279 0.82217 1.90604 1.55492 1.67850 1.38661 1.47113 1.38658 1.41158 1.11329 1.23166 0.94753 0.99104 0.88483 1.21890 0.97504 0.95566 1.00020 1.21128 0.96855 0.96329 0.96156 1.21774 1.00537 0.96840 1.00484 1.21889 0.99460 0.96908 0.97422 1.21311 0.90220 0.87929 0.99836 0.90773 0.91776 0.95898 0.89839 0.94644 0.85965 0.91259 0.94319 0.90740 0.84451 0.95358 0.89411 0.89363 0.91568 0.91236 0.94505 0.95367 0.89248 0.93463 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.18 11.01 113.37 1.25 2.43 16 2 O -0.39 -15.04 8.35 -148.98 -1.24 -16.28 16 3 C 0.06 1.91 5.56 71.98 0.40 2.31 16 4 C 0.06 2.35 5.52 86.38 0.48 2.82 16 5 N -0.48 -25.17 2.46 -657.94 -1.62 -26.79 16 6 C -0.34 -19.28 8.54 84.01 0.72 -18.56 16 7 H 0.08 4.23 7.91 -2.91 -0.02 4.21 16 8 C 0.02 1.23 4.34 84.90 0.37 1.60 16 9 N -0.86 -54.68 11.83 21.66 0.26 -54.42 16 10 Si 0.96 47.94 29.60 68.60 2.03 49.97 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 14 C 0.70 38.52 6.88 179.06 1.23 39.75 16 15 O -0.64 -42.28 14.08 -3.97 -0.06 -42.33 16 16 N -0.64 -28.10 2.93 -894.53 -2.62 -30.72 16 17 C 0.07 2.25 4.26 86.51 0.37 2.62 16 18 C -0.11 -3.39 5.38 30.82 0.17 -3.23 16 19 C -0.09 -2.23 2.68 -10.76 -0.03 -2.26 16 20 C -0.14 -2.99 9.19 71.98 0.66 -2.33 16 21 C -0.12 -3.75 5.36 30.67 0.16 -3.59 16 22 C 0.13 4.94 6.44 86.36 0.56 5.50 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 28 H 0.12 4.15 3.49 -23.92 -0.08 4.06 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.25 15.58 8.32 -92.71 -0.77 14.81 16 31 H 0.07 2.04 7.66 -2.39 -0.02 2.02 16 32 H 0.14 5.03 1.09 -12.16 -0.01 5.02 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 2.11 7.07 -2.39 -0.02 2.09 16 42 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -80.00 323.04 3.98 -76.01 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.90 Total: 17.50 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.33 Total: 27.07 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -3.98 Total: -111.93 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.30 Total: -58.62 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -80.00 3.98 -76.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316528417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.192 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds