Wall clock time and date at job start Mon Mar 30 2020 04:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47448 * 180.02562 * 14 12 2 16 16 C 1.48541 * 110.99951 * 287.39777 * 15 14 12 17 17 C 1.54940 * 103.22570 * 200.27917 * 16 15 14 18 18 C 1.54594 * 102.92358 * 37.41503 * 17 16 15 19 19 C 1.52995 * 110.30678 * 96.95624 * 18 17 16 20 20 C 1.53001 * 110.30969 * 219.12793 * 18 17 16 21 21 O 1.42900 * 109.46761 * 295.71725 * 20 18 17 22 22 C 1.47897 * 111.00036 * 170.00268 * 15 14 12 23 23 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 24 24 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 25 25 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 27 27 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 30 30 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 31 31 H 1.08993 * 110.66673 * 318.71496 * 16 15 14 32 32 H 1.09000 * 110.66079 * 81.84426 * 16 15 14 33 33 H 1.09004 * 110.71993 * 279.05515 * 17 16 15 34 34 H 1.08998 * 110.87608 * 155.84560 * 17 16 15 35 35 H 1.09001 * 109.47557 * 304.28341 * 19 18 17 36 36 H 1.09003 * 109.47311 * 64.28940 * 19 18 17 37 37 H 1.08997 * 109.46732 * 184.28254 * 19 18 17 38 38 H 1.09004 * 109.47114 * 55.71506 * 20 18 17 39 39 H 1.08994 * 109.47261 * 175.71638 * 20 18 17 40 40 H 0.96705 * 113.99859 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.92115 * 265.19355 * 22 15 14 42 42 H 1.08994 * 109.92039 * 26.49198 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3397 -3.5890 -0.0005 16 6 3.0008 -3.7242 -1.3238 17 6 3.5224 -5.1831 -1.3121 18 6 2.3968 -5.9468 -0.5774 19 6 1.4508 -6.5991 -1.5876 20 6 2.9928 -7.0046 0.3536 21 8 3.6804 -7.9885 -0.4218 22 6 1.6505 -4.8754 0.2392 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1383 -0.5138 28 1 4.0390 4.4388 0.8505 29 1 0.7589 -2.5303 0.8896 30 1 0.7582 -2.5299 -0.8903 31 1 2.2815 -3.5792 -2.1298 32 1 3.8283 -3.0204 -1.4141 33 1 4.4599 -5.2531 -0.7604 34 1 3.6450 -5.5599 -2.3275 35 1 1.0643 -5.8392 -2.2668 36 1 1.9923 -7.3542 -2.1574 37 1 0.6218 -7.0687 -1.0582 38 1 3.6926 -6.5302 1.0417 39 1 2.1934 -7.4819 0.9201 40 1 4.0847 -8.6919 0.1045 41 1 1.6873 -5.1245 1.2997 42 1 0.6148 -4.8095 -0.0937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381653214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:51 Heat of formation + Delta-G solvation = -76.998570 kcal Electronic energy + Delta-G solvation = -21435.067462 eV Core-core repulsion = 18222.287485 eV Total energy + Delta-G solvation = -3212.779978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92448 -38.54846 -36.59300 -34.70939 -33.33713 -32.52486 -29.89820 -28.41688 -27.20284 -26.54155 -25.54759 -24.19007 -22.54832 -21.16916 -19.29514 -18.29748 -17.48879 -16.49662 -16.42786 -15.73943 -15.51014 -15.00603 -14.92065 -14.61488 -14.13450 -13.95090 -13.43826 -13.06522 -12.86787 -12.46866 -12.39471 -12.22448 -12.09597 -11.97894 -11.75118 -11.65538 -11.21609 -11.13576 -10.97177 -10.81352 -10.64656 -10.55994 -10.54037 -10.12285 -10.09281 -9.58050 -8.85402 -8.39981 -8.19600 -7.57458 -6.00805 -4.05245 3.33986 3.39765 3.41244 3.51799 3.72491 3.97901 4.30898 4.48695 4.49708 4.57969 4.90266 5.10979 5.20092 5.23765 5.31435 5.33462 5.33621 5.38420 5.47781 5.50439 5.53918 5.70685 5.73976 5.79160 5.88709 5.94435 5.98710 6.16157 6.21502 6.24725 6.30784 6.94390 6.99201 7.17964 7.41686 7.48587 7.60313 7.96261 8.27761 8.48311 8.95318 9.19610 9.59897 11.07262 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.003815 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.011781 B = 7337.000943 C = 7629.961768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.506 3.494 13 O -0.522 6.522 14 C 0.029 3.971 15 N -0.495 5.495 16 C 0.036 3.964 17 C -0.104 4.104 18 C -0.072 4.072 19 C -0.133 4.133 20 C 0.091 3.909 21 O -0.571 6.571 22 C 0.045 3.955 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.377 0.623 41 H 0.079 0.921 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -20.178 -3.020 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.291 3.709 13 O -0.398 6.398 14 C -0.102 4.102 15 N -0.219 5.219 16 C -0.091 4.091 17 C -0.142 4.142 18 C -0.072 4.072 19 C -0.190 4.190 20 C 0.013 3.987 21 O -0.376 6.376 22 C -0.083 4.083 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.223 0.777 41 H 0.097 0.903 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.151 -19.468 -3.141 20.657 hybrid contribution -0.475 -0.003 0.946 1.059 sum -6.626 -19.470 -2.195 20.684 Atomic orbital electron populations 1.21612 0.81697 1.02462 1.00204 1.48162 1.06016 1.07808 1.72084 1.19253 0.92497 0.78032 0.97437 1.21454 1.36228 1.06310 0.92368 0.92483 1.24942 0.95384 0.96410 0.97426 1.69938 1.38367 1.14497 1.30705 0.86494 0.78799 0.77447 0.84643 1.20534 1.21190 1.19954 1.20098 0.88259 0.84581 0.77945 1.90656 1.13605 1.86820 1.48715 1.22237 0.94422 0.91438 1.02126 1.64504 1.26250 1.00993 1.30150 1.23343 0.99379 0.97435 0.88955 1.22512 0.97827 0.93555 1.00344 1.21409 0.96070 0.94078 0.95688 1.21805 0.98334 1.00473 0.98420 1.22231 0.94928 0.89009 0.92509 1.86467 1.73820 1.39418 1.37869 1.22932 0.96002 0.88964 1.00414 0.93941 0.92716 0.90756 0.95119 0.93903 0.92764 0.88604 0.92542 0.94332 0.88482 0.90597 0.91001 0.92862 0.91584 0.92902 0.92943 0.93874 0.77699 0.90255 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.24 59.84 0.61 1.96 16 2 N -0.61 -13.15 2.86 -182.96 -0.52 -13.67 16 3 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 4 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.51 10.81 7.50 -10.98 -0.08 10.73 16 13 O -0.52 -13.49 14.64 5.55 0.08 -13.41 16 14 C 0.03 0.46 3.75 -4.98 -0.02 0.44 16 15 N -0.49 -7.64 4.91 -231.89 -1.14 -8.78 16 16 C 0.04 0.54 5.93 -1.89 -0.01 0.53 16 17 C -0.10 -1.30 5.95 -24.87 -0.15 -1.45 16 18 C -0.07 -0.77 0.77 -153.15 -0.12 -0.89 16 19 C -0.13 -1.26 8.07 37.16 0.30 -0.96 16 20 C 0.09 0.85 5.61 37.16 0.21 1.06 16 21 O -0.57 -5.24 12.71 -35.23 -0.45 -5.69 16 22 C 0.05 0.52 5.99 -2.75 -0.02 0.51 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 25 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.10 1.33 7.34 -51.93 -0.38 0.95 16 30 H 0.06 0.76 7.80 -51.92 -0.40 0.36 16 31 H 0.04 0.53 7.81 -51.93 -0.41 0.13 16 32 H 0.10 1.72 7.10 -51.93 -0.37 1.36 16 33 H 0.08 1.01 7.84 -51.93 -0.41 0.61 16 34 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.66 7.62 -51.93 -0.40 0.26 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 1.80 9.12 45.56 0.42 2.22 16 41 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 42 H 0.05 0.51 7.31 -51.93 -0.38 0.13 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -34.85 337.37 -7.30 -42.15 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.35 Total: -1.24 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.28 Total: 4.63 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.92 Total: -48.74 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.37 Total: -19.10 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.85 -7.30 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381653214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds