Wall clock time and date at job start Mon Mar 30 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 N 1.46894 * 109.47448 * 180.02562 * 14 12 2 16 16 C 1.48541 * 110.99951 * 287.39777 * 15 14 12 17 17 C 1.54940 * 103.22570 * 200.27917 * 16 15 14 18 18 C 1.54594 * 102.92358 * 37.41503 * 17 16 15 19 19 C 1.52995 * 110.30678 * 96.95624 * 18 17 16 20 20 C 1.53001 * 110.30969 * 219.12793 * 18 17 16 21 21 O 1.42900 * 109.46761 * 295.71725 * 20 18 17 22 22 C 1.47897 * 111.00036 * 170.00268 * 15 14 12 23 23 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 24 24 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 25 25 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 27 27 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 30 30 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 31 31 H 1.08993 * 110.66673 * 318.71496 * 16 15 14 32 32 H 1.09000 * 110.66079 * 81.84426 * 16 15 14 33 33 H 1.09004 * 110.71993 * 279.05515 * 17 16 15 34 34 H 1.08998 * 110.87608 * 155.84560 * 17 16 15 35 35 H 1.09001 * 109.47557 * 304.28341 * 19 18 17 36 36 H 1.09003 * 109.47311 * 64.28940 * 19 18 17 37 37 H 1.08997 * 109.46732 * 184.28254 * 19 18 17 38 38 H 1.09004 * 109.47114 * 55.71506 * 20 18 17 39 39 H 1.08994 * 109.47261 * 175.71638 * 20 18 17 40 40 H 0.96705 * 113.99859 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.92115 * 265.19355 * 22 15 14 42 42 H 1.08994 * 109.92039 * 26.49198 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 7 2.3397 -3.5890 -0.0005 16 6 3.0008 -3.7242 -1.3238 17 6 3.5224 -5.1831 -1.3121 18 6 2.3968 -5.9468 -0.5774 19 6 1.4508 -6.5991 -1.5876 20 6 2.9928 -7.0046 0.3536 21 8 3.6804 -7.9885 -0.4218 22 6 1.6505 -4.8754 0.2392 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1383 -0.5138 28 1 4.0390 4.4388 0.8505 29 1 0.7589 -2.5303 0.8896 30 1 0.7582 -2.5299 -0.8903 31 1 2.2815 -3.5792 -2.1298 32 1 3.8283 -3.0204 -1.4141 33 1 4.4599 -5.2531 -0.7604 34 1 3.6450 -5.5599 -2.3275 35 1 1.0643 -5.8392 -2.2668 36 1 1.9923 -7.3542 -2.1574 37 1 0.6218 -7.0687 -1.0582 38 1 3.6926 -6.5302 1.0417 39 1 2.1934 -7.4819 0.9201 40 1 4.0847 -8.6919 0.1045 41 1 1.6873 -5.1245 1.2997 42 1 0.6148 -4.8095 -0.0937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381653214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:50 Heat of formation + Delta-G solvation = -104.878369 kcal Electronic energy + Delta-G solvation = -21436.276421 eV Core-core repulsion = 18222.287485 eV Total energy + Delta-G solvation = -3213.988936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10845 -39.96238 -37.43470 -36.48934 -34.78076 -34.24091 -31.02641 -30.11188 -28.40586 -27.48884 -27.08837 -25.40076 -24.28807 -22.36888 -20.30382 -19.75472 -18.68558 -18.23985 -17.82456 -17.21388 -16.63766 -16.49539 -16.37331 -15.79126 -15.39727 -15.17829 -14.73417 -14.29811 -14.15393 -13.83013 -13.61183 -13.47303 -13.39959 -13.17818 -13.07718 -12.96959 -12.80881 -12.70320 -12.56221 -12.25994 -12.18537 -11.84077 -11.68993 -11.58790 -11.36487 -10.79827 -10.65243 -10.52104 -9.42113 -9.29180 -8.22372 -6.37417 1.35995 1.39826 1.49237 1.88890 2.26666 2.41733 3.06726 3.09409 3.25570 3.60151 3.68890 3.83775 4.13928 4.22271 4.26142 4.28736 4.36746 4.43394 4.50781 4.61663 4.64810 4.72632 4.77021 4.81672 4.89732 4.95713 5.00707 5.01376 5.13130 5.20713 5.22669 5.26541 5.42883 5.56775 5.83150 5.90286 6.01592 6.06958 6.71059 6.83440 6.95802 7.29213 7.55792 8.84612 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.003815 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.011781 B = 7337.000943 C = 7629.961768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.260 1.260 12 C 0.494 3.506 13 O -0.581 6.581 14 C 0.045 3.955 15 N -0.525 5.525 16 C 0.039 3.961 17 C -0.100 4.100 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.093 3.907 21 O -0.586 6.586 22 C 0.048 3.952 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.023 0.977 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 -22.065 -1.855 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.184 1.184 12 C 0.282 3.718 13 O -0.461 6.461 14 C -0.086 4.086 15 N -0.249 5.249 16 C -0.089 4.089 17 C -0.138 4.138 18 C -0.070 4.070 19 C -0.184 4.184 20 C 0.015 3.985 21 O -0.394 6.394 22 C -0.079 4.079 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.611 -21.391 -1.973 23.144 hybrid contribution 0.305 0.564 0.526 0.829 sum -8.306 -20.827 -1.447 22.469 Atomic orbital electron populations 1.21926 0.77888 1.04038 1.02475 1.48203 1.08404 1.06291 1.71878 1.18702 0.90958 0.80434 0.95937 1.21726 1.36657 1.06619 0.93089 0.92886 1.25892 0.94895 0.96429 1.02100 1.70058 1.38848 1.14963 1.33087 0.85396 0.78642 0.77539 0.79114 1.20779 1.19842 1.18444 1.21256 0.88028 0.86278 0.76252 1.90628 1.16488 1.87816 1.51167 1.22142 0.93818 0.87935 1.04702 1.64392 1.27478 1.02658 1.30405 1.23196 0.98436 0.97774 0.89494 1.22441 0.97927 0.92520 1.00873 1.21421 0.95472 0.94175 0.95970 1.21753 0.98351 1.00246 0.98066 1.22173 0.95339 0.88930 0.92011 1.86418 1.74103 1.40047 1.38820 1.23002 0.96829 0.86960 1.01155 0.91251 0.88750 0.91580 0.95931 0.98772 0.92411 0.85924 0.89422 0.93197 0.92829 0.92313 0.90330 0.92812 0.92159 0.91180 0.94046 0.91654 0.75555 0.89423 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.61 -26.73 2.86 -851.14 -2.43 -29.16 16 3 C 0.26 14.54 5.16 85.64 0.44 14.98 16 4 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 8 Si 0.97 45.87 29.54 68.60 2.03 47.89 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 C 0.49 21.25 7.50 87.66 0.66 21.91 16 13 O -0.58 -31.59 14.64 -3.05 -0.04 -31.63 16 14 C 0.05 1.30 3.75 85.56 0.32 1.62 16 15 N -0.52 -15.51 4.91 -887.57 -4.35 -19.86 16 16 C 0.04 1.16 5.93 86.65 0.51 1.67 16 17 C -0.10 -2.45 5.95 31.80 0.19 -2.26 16 18 C -0.07 -1.33 0.77 -51.30 -0.04 -1.37 16 19 C -0.13 -2.00 8.07 71.98 0.58 -1.42 16 20 C 0.09 1.54 5.61 71.98 0.40 1.94 16 21 O -0.59 -9.58 12.71 -148.98 -1.89 -11.47 16 22 C 0.05 0.96 5.99 86.45 0.52 1.48 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.04 6.44 -2.38 -0.02 2.03 16 25 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 26 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 27 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 28 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 29 H 0.12 2.89 7.34 -2.39 -0.02 2.87 16 30 H 0.09 2.01 7.80 -2.38 -0.02 1.99 16 31 H 0.05 1.34 7.81 -2.39 -0.02 1.32 16 32 H 0.05 2.05 7.10 -2.39 -0.02 2.03 16 33 H 0.06 1.62 7.84 -2.38 -0.02 1.60 16 34 H 0.08 1.79 7.85 -2.39 -0.02 1.77 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.04 7.62 -2.39 -0.02 1.02 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.04 0.76 8.11 -2.38 -0.02 0.75 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.39 2.97 9.12 -74.05 -0.68 2.30 16 41 H 0.09 1.63 7.68 -2.39 -0.02 1.61 16 42 H 0.07 1.14 7.31 -2.39 -0.02 1.12 16 Total: -1.00 -79.89 337.37 -0.49 -80.39 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.32 Total: 10.00 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 5.60 Total: 11.08 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -6.50 Total: -106.26 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.94 Total: -43.11 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -79.89 -0.49 -80.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381653214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.493 kcal (2) G-P(sol) polarization free energy of solvation -79.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds