Wall clock time and date at job start Mon Mar 30 2020 04:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99962 * 2 1 4 4 C 1.52996 * 113.38408 * 46.92309 * 3 2 1 5 5 C 1.53512 * 114.16797 * 180.02562 * 3 2 1 6 6 N 1.47485 * 87.93369 * 87.62228 * 5 3 2 7 7 C 1.46902 * 110.99842 * 138.69918 * 6 5 3 8 8 C 1.53006 * 109.46626 * 170.00127 * 7 6 5 9 9 C 1.50699 * 109.46866 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00040 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99712 * 359.97438 * 11 9 8 13 13 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 14 14 C 1.50700 * 109.47101 * 89.99740 * 13 11 9 15 15 H 1.08002 * 120.00255 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00213 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99754 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00483 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47099 * 59.99476 * 18 16 14 20 20 H 1.48494 * 109.47597 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46975 * 300.00035 * 18 16 14 22 22 C 1.47479 * 87.83288 * 27.01031 * 6 5 3 23 23 H 1.08991 * 109.47364 * 59.99981 * 1 2 3 24 24 H 1.09001 * 109.46849 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47126 * 299.99718 * 1 2 3 26 26 H 1.08997 * 109.47267 * 193.07912 * 4 3 2 27 27 H 1.08996 * 109.46962 * 313.07678 * 4 3 2 28 28 H 1.08997 * 109.47340 * 73.07728 * 4 3 2 29 29 H 1.08994 * 113.47881 * 332.85754 * 5 3 2 30 30 H 1.09001 * 113.47249 * 202.38614 * 5 3 2 31 31 H 1.09000 * 109.47263 * 50.00433 * 7 6 5 32 32 H 1.09001 * 109.47582 * 289.99712 * 7 6 5 33 33 H 1.08993 * 109.46955 * 300.00347 * 8 7 6 34 34 H 1.09000 * 109.47050 * 60.00176 * 8 7 6 35 35 H 1.08998 * 109.47147 * 90.00304 * 12 11 9 36 36 H 1.09001 * 109.46572 * 210.00435 * 12 11 9 37 37 H 1.09003 * 109.47046 * 329.99807 * 12 11 9 38 38 H 1.08993 * 109.47349 * 209.99741 * 13 11 9 39 39 H 1.09005 * 109.47039 * 329.99916 * 13 11 9 40 40 H 0.96998 * 120.00012 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.48076 * 87.75656 * 22 6 5 42 42 H 1.09000 * 113.47438 * 218.22438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.3810 2.2503 1.0258 5 6 3.5453 1.3099 -0.0006 6 7 3.4917 1.2489 -1.4732 7 6 4.4996 2.1330 -2.0738 8 6 4.5857 1.8610 -3.5770 9 6 5.6200 2.7675 -4.1930 10 8 6.2280 3.5540 -3.4983 11 7 5.8687 2.7049 -5.5162 12 6 5.1339 1.7552 -6.3554 13 6 6.8738 3.5865 -6.1151 14 6 8.2189 2.9075 -6.0860 15 1 8.3155 1.9184 -5.6632 16 6 9.3264 3.5495 -6.5982 17 7 9.2089 4.7541 -7.1126 18 14 10.9936 2.7077 -6.5627 19 1 10.9247 1.4405 -7.3340 20 1 12.0124 3.6013 -7.1697 21 1 11.3688 2.4116 -5.1568 22 6 2.1797 1.9180 -1.3974 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6980 3.2727 0.8203 27 1 0.2949 2.1865 0.9601 28 1 1.7019 1.9648 2.0275 29 1 3.9824 0.4215 0.4551 30 1 3.9769 2.2356 0.3801 31 1 5.4695 1.9434 -1.6140 32 1 4.2160 3.1724 -1.9084 33 1 4.8692 0.8216 -3.7424 34 1 3.6158 2.0506 -4.0367 35 1 4.2281 2.2294 -6.7332 36 1 5.7609 1.4501 -7.1932 37 1 4.8662 0.8794 -5.7642 38 1 6.5984 3.8030 -7.1472 39 1 6.9242 4.5170 -5.5496 40 1 9.9881 5.2059 -7.4725 41 1 2.2468 3.0060 -1.3893 42 1 1.4593 1.5449 -2.1253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382628340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:13 Heat of formation + Delta-G solvation = -63.950910 kcal Electronic energy + Delta-G solvation = -20961.522148 eV Core-core repulsion = 17749.307959 eV Total energy + Delta-G solvation = -3212.214189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70451 -40.56075 -37.80366 -36.61182 -34.78778 -33.70333 -31.05148 -29.68796 -28.08394 -27.38482 -27.05444 -26.26091 -24.53635 -22.40522 -20.67711 -19.91798 -18.71615 -17.97370 -17.40602 -17.12574 -17.05242 -16.53085 -16.41837 -16.08637 -15.42473 -15.33967 -15.11563 -14.48412 -14.20770 -13.93955 -13.69258 -13.62406 -13.46542 -13.32913 -13.13762 -12.96788 -12.86302 -12.66054 -12.47456 -12.34262 -12.20788 -12.14555 -11.81125 -11.72421 -11.29793 -10.65804 -10.62730 -10.46175 -9.88453 -9.43579 -8.23981 -6.39292 1.35634 1.39997 1.47470 1.81713 2.27764 2.41543 2.61234 3.04951 3.08244 3.33982 3.63738 3.84913 3.88848 4.06115 4.25326 4.36009 4.40827 4.49571 4.53918 4.54856 4.58428 4.67830 4.70233 4.73449 4.77514 4.79313 4.90224 4.94022 4.95510 4.97533 5.04451 5.20002 5.21207 5.34250 5.54407 5.82609 5.96396 6.04577 6.32648 6.67501 6.77209 7.26223 7.46109 8.83002 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037807 B = 0.003250 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.418735 B = 8612.448709 C = 8777.056234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.376 6.376 3 C 0.089 3.911 4 C -0.167 4.167 5 C 0.007 3.993 6 N -0.475 5.475 7 C 0.043 3.957 8 C -0.109 4.109 9 C 0.494 3.506 10 O -0.600 6.600 11 N -0.611 5.611 12 C 0.079 3.921 13 C 0.258 3.742 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.969 3.031 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.278 1.278 22 C -0.025 4.025 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.024 0.976 39 H -0.002 1.002 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.007 -8.818 12.713 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.295 6.295 3 C 0.048 3.952 4 C -0.224 4.224 5 C -0.122 4.122 6 N -0.197 5.197 7 C -0.086 4.086 8 C -0.149 4.149 9 C 0.283 3.717 10 O -0.482 6.482 11 N -0.343 5.343 12 C -0.063 4.063 13 C 0.137 3.863 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.154 4.154 23 H 0.066 0.934 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.016 0.984 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.388 -9.078 12.554 24.817 hybrid contribution 1.093 1.039 -0.027 1.509 sum -18.294 -8.039 12.526 23.584 Atomic orbital electron populations 1.22979 0.79676 1.03767 1.01104 1.87948 1.21331 1.25580 1.94656 1.22518 0.93559 0.84554 0.94537 1.22209 1.02324 0.99034 0.98865 1.24053 0.95001 1.03174 0.89925 1.68883 1.02396 1.39502 1.08914 1.22265 0.96782 0.95265 0.94269 1.21393 0.98088 0.99783 0.95633 1.21370 0.84134 0.84169 0.82000 1.90621 1.53683 1.42094 1.61836 1.48211 1.39170 1.38824 1.08047 1.21931 0.96177 0.92569 0.95659 1.18753 0.86189 0.89161 0.92197 1.21691 0.94290 1.02694 1.39774 0.92954 1.25882 1.03278 0.95526 0.94509 1.70044 1.31877 1.14216 1.40712 0.85451 0.78147 0.78743 0.78381 1.18435 1.20158 1.20318 1.24681 0.93210 0.98749 0.98784 0.93374 0.88618 0.92203 0.90349 0.90159 0.90771 0.89399 0.88997 0.92045 0.93508 0.87357 0.87083 0.91036 0.91575 0.88942 0.95823 0.98436 0.92322 0.89629 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.36 113.37 1.17 1.43 16 2 O -0.38 -7.57 10.71 -148.98 -1.60 -9.16 16 3 C 0.09 1.57 1.47 -10.45 -0.02 1.56 16 4 C -0.17 -2.00 9.02 71.98 0.65 -1.35 16 5 C 0.01 0.15 7.11 83.57 0.59 0.74 16 6 N -0.47 -11.60 6.33 -928.20 -5.88 -17.48 16 7 C 0.04 1.25 4.11 86.31 0.35 1.61 16 8 C -0.11 -3.25 4.58 29.85 0.14 -3.11 16 9 C 0.49 21.22 7.67 87.66 0.67 21.89 16 10 O -0.60 -31.83 15.56 -3.04 -0.05 -31.87 16 11 N -0.61 -26.86 2.86 -851.13 -2.43 -29.29 16 12 C 0.08 2.44 10.24 127.77 1.31 3.75 16 13 C 0.26 14.38 5.16 85.63 0.44 14.82 16 14 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 15 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 18 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 C -0.03 -0.49 7.13 83.57 0.60 0.11 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.55 6.37 -2.39 -0.02 0.54 16 26 H 0.08 0.86 7.90 -2.39 -0.02 0.84 16 27 H 0.08 0.75 6.13 -2.39 -0.01 0.73 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 31 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.05 1.40 7.26 -2.39 -0.02 1.38 16 33 H 0.11 2.98 7.40 -2.39 -0.02 2.96 16 34 H 0.11 2.72 8.11 -2.39 -0.02 2.70 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 37 H 0.09 2.25 6.44 -2.39 -0.02 2.24 16 38 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 39 H 0.00 -0.16 7.42 -2.38 -0.02 -0.18 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.09 1.53 7.21 -2.39 -0.02 1.51 16 42 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.47 342.55 -0.05 -76.51 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.98 Total: 10.24 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.61 Total: 10.20 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -8.02 Total: -103.65 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.64 Total: -41.04 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.47 -0.05 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382628340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.562 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds