Wall clock time and date at job start Mon Mar 30 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47181 * 2 1 4 4 N 1.46900 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46558 * 59.99993 * 3 2 1 6 6 O 1.42902 * 109.47382 * 65.00080 * 5 3 2 7 7 C 1.42894 * 113.99897 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47041 * 300.00075 * 3 2 1 9 9 O 1.21284 * 119.99969 * 98.30625 * 8 3 2 10 10 N 1.34770 * 119.99865 * 278.30222 * 8 3 2 11 11 C 1.46508 * 119.99997 * 185.01074 * 10 8 3 12 12 C 1.52996 * 109.47054 * 175.01209 * 11 10 8 13 13 C 1.50703 * 115.55181 * 305.53949 * 12 11 10 14 14 H 1.08002 * 119.99779 * 144.31140 * 13 12 11 15 15 C 1.37883 * 120.00124 * 324.31845 * 13 12 11 16 16 N 1.31514 * 119.99647 * 3.33042 * 15 13 12 17 17 Si 1.86791 * 119.99985 * 183.33388 * 15 13 12 18 18 H 1.48500 * 109.47295 * 59.99600 * 17 15 13 19 19 H 1.48500 * 109.47369 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47444 * 299.99994 * 17 15 13 21 21 C 1.52998 * 117.49739 * 159.87820 * 12 11 10 22 22 C 1.52995 * 117.49947 * 91.21925 * 12 11 10 23 23 H 1.09001 * 109.46719 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47007 * 300.00110 * 1 2 3 25 25 H 1.09003 * 109.46694 * 60.00195 * 1 2 3 26 26 H 1.08995 * 109.47384 * 120.00232 * 2 1 3 27 27 H 1.09000 * 109.47243 * 240.00542 * 2 1 3 28 28 H 1.00899 * 110.99611 * 60.30333 * 4 3 2 29 29 H 1.00904 * 110.99701 * 184.24981 * 4 3 2 30 30 H 1.09003 * 109.46795 * 184.99975 * 5 3 2 31 31 H 1.08993 * 109.47317 * 304.99885 * 5 3 2 32 32 H 1.09000 * 109.47551 * 300.00213 * 7 6 5 33 33 H 1.08997 * 109.47148 * 60.00289 * 7 6 5 34 34 H 1.09006 * 109.46756 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00240 * 5.00339 * 10 8 3 36 36 H 1.09000 * 109.46981 * 295.01490 * 11 10 8 37 37 H 1.09001 * 109.46725 * 55.01315 * 11 10 8 38 38 H 0.96998 * 119.99841 * 185.00765 * 16 15 13 39 39 H 1.09007 * 117.50027 * 359.97438 * 21 12 11 40 40 H 1.08995 * 117.50401 * 145.01843 * 21 12 11 41 41 H 1.09008 * 117.49582 * 214.97622 * 22 12 11 42 42 H 1.09001 * 117.50172 * 359.96819 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 1.5300 2.1637 1.2493 6 8 2.0997 1.5612 2.4131 7 6 1.6863 2.1638 3.6411 8 6 1.5377 2.1529 -1.2304 9 8 0.5585 2.8653 -1.1621 10 7 2.1766 1.9967 -2.4067 11 6 1.7562 2.7711 -3.5772 12 6 2.7148 2.5010 -4.7386 13 6 4.1741 2.7367 -4.4453 14 1 4.9239 2.0974 -4.8874 15 6 4.5520 3.7686 -3.6124 16 7 3.6368 4.5059 -3.0222 17 14 6.3637 4.1192 -3.3226 18 1 7.0181 4.4437 -4.6155 19 1 6.5029 5.2707 -2.3952 20 1 7.0105 2.9224 -2.7272 21 6 2.2187 2.8145 -6.1516 22 6 2.3618 1.3604 -5.6953 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 3.8709 0.9757 -0.8174 29 1 3.8706 2.3819 0.0704 30 1 1.8183 3.2140 1.2057 31 1 0.4437 2.0868 1.2952 32 1 1.9781 3.2140 3.6469 33 1 0.6032 2.0872 3.7368 34 1 2.1617 1.6495 4.4763 35 1 2.9149 1.3717 -2.4784 36 1 0.7464 2.4774 -3.8636 37 1 1.7704 3.8336 -3.3340 38 1 3.9005 5.2761 -2.4948 39 1 1.2092 3.2128 -6.2538 40 1 2.9478 3.1908 -6.8691 41 1 3.1851 0.7806 -6.1128 42 1 1.4469 0.8021 -5.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404153848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:50 Heat of formation + Delta-G solvation = -78.776762 kcal Electronic energy + Delta-G solvation = -22425.127500 eV Core-core repulsion = 19212.270414 eV Total energy + Delta-G solvation = -3212.857086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29891 -39.03122 -38.31650 -36.45010 -34.77235 -34.11642 -32.56122 -29.08618 -28.08571 -27.39794 -26.71274 -25.00479 -23.13105 -22.78198 -21.15342 -20.14668 -18.67673 -17.89299 -17.43096 -17.09732 -16.73671 -16.68031 -16.18639 -15.91239 -15.56231 -15.43133 -14.90393 -14.70780 -14.56414 -13.99980 -13.53277 -13.33914 -13.23909 -13.03115 -12.90968 -12.62612 -12.55300 -12.33295 -12.30310 -12.13071 -12.04940 -11.60333 -11.55287 -11.24036 -10.86892 -10.68983 -10.55602 -10.18286 -9.69480 -9.54858 -7.95847 -6.20122 1.43803 1.48524 1.52995 1.77050 2.23472 2.41923 2.97352 3.15238 3.42475 3.61163 3.71029 3.78950 4.10064 4.26165 4.35534 4.41477 4.45944 4.52454 4.57866 4.59949 4.65326 4.73149 4.78764 4.86388 4.90842 4.94858 5.05594 5.12077 5.19617 5.28876 5.38390 5.51318 5.59172 5.79202 5.94736 5.96988 6.25334 6.33304 6.36766 6.76331 6.92773 7.44795 7.46670 8.90927 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.006850 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.677680 B = 4086.496349 C = 5008.225274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C 0.116 3.884 4 N -0.810 5.810 5 C 0.096 3.904 6 O -0.382 6.382 7 C 0.023 3.977 8 C 0.483 3.517 9 O -0.596 6.596 10 N -0.674 5.674 11 C 0.177 3.823 12 C 0.009 3.991 13 C -0.501 4.501 14 H 0.058 0.942 15 C 0.041 3.959 16 N -0.888 5.888 17 Si 0.945 3.055 18 H -0.281 1.281 19 H -0.294 1.294 20 H -0.264 1.264 21 C -0.201 4.201 22 C -0.186 4.186 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.346 0.654 29 H 0.341 0.659 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.013 0.987 37 H 0.081 0.919 38 H 0.256 0.744 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 -7.587 8.115 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C 0.020 3.980 4 N -0.341 5.341 5 C 0.018 3.982 6 O -0.300 6.300 7 C -0.073 4.073 8 C 0.267 3.733 9 O -0.477 6.477 10 N -0.320 5.320 11 C 0.053 3.947 12 C 0.008 3.992 13 C -0.538 4.538 14 H 0.076 0.924 15 C -0.160 4.160 16 N -0.525 5.525 17 Si 0.771 3.229 18 H -0.207 1.207 19 H -0.220 1.220 20 H -0.189 1.189 21 C -0.240 4.240 22 C -0.223 4.223 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.031 0.969 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.109 -7.532 8.987 12.131 hybrid contribution 0.920 1.425 -1.169 2.060 sum -2.189 -6.107 7.817 10.159 Atomic orbital electron populations 1.21818 0.94918 1.02674 1.01332 1.21427 0.96160 0.91913 1.04023 1.21005 0.89459 0.97454 0.90109 1.58930 1.03982 1.23882 1.47322 1.22075 0.97163 0.94381 0.84587 1.87903 1.70475 1.57932 1.13703 1.22950 1.00025 0.98141 0.86197 1.21825 0.83519 0.81861 0.86087 1.90588 1.28579 1.42233 1.86343 1.45494 1.35033 1.42119 1.09391 1.20773 0.92184 0.97520 0.84264 1.19286 0.94558 0.98107 0.87258 1.20640 0.90116 1.15125 1.27945 0.92361 1.25503 1.00156 0.96006 0.94375 1.70048 1.33256 1.16957 1.32267 0.85828 0.81718 0.77810 0.77515 1.20732 1.22029 1.18882 1.22957 1.00411 0.98968 1.01624 1.22949 1.01799 0.90669 1.06902 0.90077 0.92342 0.94778 0.88700 0.91062 0.83921 0.84611 0.95202 0.91739 0.94311 0.93315 0.87654 0.76532 0.96880 0.90126 0.93434 0.90817 0.90475 0.89661 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.30 71.98 0.67 -3.29 16 2 C -0.10 -2.65 5.17 30.60 0.16 -2.50 16 3 C 0.12 3.79 0.71 2.78 0.00 3.79 16 4 N -0.81 -25.43 8.56 -154.52 -1.32 -26.75 16 5 C 0.10 3.07 4.12 71.98 0.30 3.37 16 6 O -0.38 -10.98 10.00 -148.98 -1.49 -12.47 16 7 C 0.02 0.49 11.01 113.37 1.25 1.74 16 8 C 0.48 19.45 5.60 87.66 0.49 19.94 16 9 O -0.60 -28.23 15.76 -3.04 -0.05 -28.27 16 10 N -0.67 -27.55 4.97 -463.06 -2.30 -29.85 16 11 C 0.18 8.20 4.61 86.38 0.40 8.60 16 12 C 0.01 0.39 2.02 -52.93 -0.11 0.28 16 13 C -0.50 -24.10 8.44 25.60 0.22 -23.88 16 14 H 0.06 2.79 7.82 -2.91 -0.02 2.76 16 15 C 0.04 2.01 5.32 84.66 0.45 2.46 16 16 N -0.89 -45.90 10.19 21.45 0.22 -45.68 16 17 Si 0.94 39.77 29.54 68.60 2.03 41.80 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 C -0.20 -8.40 9.96 30.62 0.30 -8.09 16 22 C -0.19 -7.16 9.92 30.62 0.30 -6.86 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.52 6.32 -2.39 -0.02 1.50 16 25 H 0.03 1.07 6.94 -2.39 -0.02 1.05 16 26 H 0.09 2.45 7.82 -2.39 -0.02 2.44 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.35 10.41 7.55 -89.69 -0.68 9.73 16 29 H 0.34 11.64 8.98 -89.69 -0.81 10.84 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 2.05 6.08 -2.39 -0.01 2.04 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.40 15.28 6.69 -92.71 -0.62 14.66 16 36 H 0.01 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.08 4.39 5.91 -2.39 -0.01 4.37 16 38 H 0.26 13.19 8.32 -92.71 -0.77 12.42 16 39 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 42 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -56.73 338.46 0.45 -56.29 By element: Atomic # 1 Polarization: 50.46 SS G_CDS: -1.07 Total: 49.39 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.43 Total: -4.44 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.41 Total: -102.28 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.54 Total: -40.75 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -56.73 0.45 -56.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404153848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.491 kcal (2) G-P(sol) polarization free energy of solvation -56.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds