Wall clock time and date at job start Mon Mar 30 2020 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00352 * 2 1 4 4 H 1.48507 * 109.46899 * 270.00107 * 3 2 1 5 5 H 1.48499 * 109.47166 * 29.99367 * 3 2 1 6 6 H 1.48501 * 109.47468 * 149.99933 * 3 2 1 7 7 C 1.37882 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 O 1.42909 * 109.46739 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99646 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46941 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47103 * 64.99911 * 12 11 10 14 14 C 1.46595 * 110.99872 * 63.84599 * 13 12 11 15 15 C 1.53698 * 111.03243 * 179.87576 * 14 13 12 16 16 N 1.45633 * 107.51184 * 303.77474 * 15 14 13 17 17 C 1.46953 * 117.16825 * 180.54709 * 16 15 14 18 18 C 1.55279 * 103.39969 * 197.48547 * 17 16 15 19 19 H 1.08994 * 110.35266 * 265.10580 * 18 17 16 20 20 O 1.42905 * 110.34958 * 142.93565 * 18 17 16 21 21 C 1.55069 * 105.00648 * 24.02174 * 18 17 16 22 22 C 1.48866 * 108.89158 * 63.52402 * 16 15 14 23 23 H 1.09002 * 110.30169 * 51.74349 * 22 16 15 24 24 C 1.47598 * 110.99665 * 189.99845 * 13 12 11 25 25 H 0.96997 * 120.00098 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47425 * 59.99934 * 9 7 2 27 27 H 1.08996 * 109.47414 * 299.99686 * 9 7 2 28 28 H 1.09001 * 109.47211 * 60.00261 * 11 10 9 29 29 H 1.09002 * 109.47229 * 300.00216 * 11 10 9 30 30 H 1.09005 * 109.46893 * 305.00000 * 12 11 10 31 31 H 1.09006 * 109.47097 * 185.00264 * 12 11 10 32 32 H 1.08993 * 109.16536 * 300.27400 * 14 13 12 33 33 H 1.08999 * 109.16894 * 59.47610 * 14 13 12 34 34 H 1.09001 * 109.84826 * 184.27520 * 15 14 13 35 35 H 1.08994 * 109.85076 * 63.27464 * 15 14 13 36 36 H 1.08990 * 110.63573 * 79.00428 * 17 16 15 37 37 H 1.09002 * 110.76712 * 316.02543 * 17 16 15 38 38 H 0.96698 * 113.99893 * 62.89358 * 20 18 17 39 39 H 1.09001 * 110.50235 * 121.50191 * 21 18 17 40 40 H 1.08991 * 110.50309 * 244.19688 * 21 18 17 41 41 H 1.08998 * 109.86497 * 57.92001 * 24 13 12 42 42 H 1.08993 * 109.92888 * 296.91042 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9562 0.0017 13 7 3.4079 -5.8872 1.2569 14 6 2.5506 -6.1883 2.4073 15 6 3.3457 -6.1193 3.7209 16 7 4.4704 -7.0367 3.6010 17 6 5.3723 -7.1472 4.7560 18 6 6.6457 -7.8034 4.1567 19 1 6.6165 -8.8840 4.2958 20 8 7.8186 -7.2567 4.7630 21 6 6.6055 -7.4525 2.6468 22 6 5.3619 -6.5659 2.5056 23 1 5.6167 -5.5160 2.6504 24 6 4.6053 -6.7483 1.1983 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 0.9446 -4.9827 -0.8887 29 1 0.9451 -4.9822 0.8913 30 1 3.3215 -5.7960 -0.8402 31 1 2.1819 -6.9376 -0.0875 32 1 1.7350 -5.4663 2.4445 33 1 2.1359 -7.1897 2.2923 34 1 2.7105 -6.4195 4.5542 35 1 3.7110 -5.1048 3.8795 36 1 4.9362 -7.7858 5.5240 37 1 5.6025 -6.1623 5.1622 38 1 7.8853 -7.4252 5.7129 39 1 7.5018 -6.9032 2.3585 40 1 6.5014 -8.3568 2.0474 41 1 5.2356 -6.4496 0.3607 42 1 4.3080 -7.7907 1.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405307555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:03 Heat of formation + Delta-G solvation = -76.618108 kcal Electronic energy + Delta-G solvation = -21347.161945 eV Core-core repulsion = 18134.398466 eV Total energy + Delta-G solvation = -3212.763480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24595 -37.75375 -36.51575 -35.13755 -32.67196 -32.43780 -30.47290 -28.26469 -27.87357 -26.52918 -23.59571 -23.10178 -22.23851 -21.35495 -20.42247 -19.81280 -17.73713 -16.38657 -16.19840 -15.84750 -15.55377 -15.17850 -14.84228 -14.55995 -14.36676 -14.06752 -13.97197 -13.61941 -13.27328 -13.00614 -12.62526 -12.28656 -11.99604 -11.77336 -11.65929 -11.22743 -11.20256 -11.07869 -10.88536 -10.81405 -10.74221 -10.52196 -10.27881 -10.20134 -9.92213 -9.03580 -8.74634 -8.59615 -8.09758 -7.97406 -6.06246 -4.06985 3.33483 3.38234 3.44436 3.62500 3.93074 4.16562 4.37843 4.40100 4.52518 4.73260 4.91206 5.05724 5.10644 5.21789 5.28232 5.30302 5.37837 5.41024 5.50661 5.56718 5.65501 5.68241 5.71836 5.75920 5.84281 5.92671 5.98922 6.07448 6.14015 6.20705 6.33107 6.66957 6.98641 7.15650 7.29261 7.33668 7.36736 7.49057 7.85875 8.22334 8.67749 9.08115 9.57788 11.05497 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.003843 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.806632 B = 7283.403229 C = 7879.288478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.534 5.534 14 C 0.065 3.935 15 C 0.057 3.943 16 N -0.528 5.528 17 C 0.011 3.989 18 C 0.101 3.899 19 H 0.068 0.932 20 O -0.565 6.565 21 C -0.107 4.107 22 C 0.063 3.937 23 H 0.068 0.932 24 C 0.075 3.925 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.377 0.623 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.564 -18.405 8.204 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.061 4.061 13 N -0.259 5.259 14 C -0.064 4.064 15 C -0.071 4.071 16 N -0.253 5.253 17 C -0.117 4.117 18 C 0.042 3.958 19 H 0.085 0.915 20 O -0.370 6.370 21 C -0.145 4.145 22 C -0.046 4.046 23 H 0.086 0.914 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.225 0.775 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.609 -18.062 7.580 21.818 hybrid contribution -0.261 0.698 0.758 1.063 sum 9.348 -17.364 8.338 21.411 Atomic orbital electron populations 1.69962 1.06101 1.27032 1.50931 1.24943 0.94949 0.99382 0.95280 0.86356 0.79708 0.82345 0.78202 1.20497 1.21146 1.19628 1.21071 0.94086 0.89377 1.50288 0.91549 1.20167 0.88849 0.83944 0.95051 1.87953 1.34634 1.12340 1.95007 1.22283 0.93905 0.86306 0.98814 1.22085 0.96119 0.96020 0.91918 1.61426 1.07871 1.54039 1.02585 1.22105 0.95432 0.99474 0.89344 1.22102 0.92519 0.94746 0.97741 1.63947 1.08055 1.48104 1.05240 1.23542 0.93605 1.00445 0.94143 1.22853 0.83325 0.96267 0.93384 0.91454 1.86568 1.43056 1.80524 1.26815 1.22164 0.97886 1.00497 0.93958 1.22522 0.91498 0.98346 0.92203 0.91446 1.21960 0.91936 0.94938 0.96479 0.92756 0.98042 0.97989 0.94309 0.94613 0.90061 0.94384 0.89668 0.94843 0.90365 0.93347 0.90169 0.93037 0.77547 0.89757 0.89985 0.90192 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.46 5.69 36.01 0.20 5.66 16 10 O -0.38 -9.43 10.27 -35.23 -0.36 -9.79 16 11 C 0.07 1.23 5.95 37.16 0.22 1.45 16 12 C 0.07 1.02 5.37 -3.82 -0.02 1.00 16 13 N -0.53 -8.36 4.59 -234.38 -1.07 -9.43 16 14 C 0.06 0.93 5.34 -3.63 -0.02 0.91 16 15 C 0.06 0.75 6.04 -4.15 -0.03 0.72 16 16 N -0.53 -6.33 4.85 -224.40 -1.09 -7.42 16 17 C 0.01 0.11 6.47 -2.59 -0.02 0.10 16 18 C 0.10 0.93 4.46 -24.43 -0.11 0.82 16 19 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 20 O -0.56 -5.27 13.30 -35.23 -0.47 -5.74 16 21 C -0.11 -1.09 6.48 -25.44 -0.16 -1.26 16 22 C 0.06 0.78 2.62 -66.85 -0.18 0.61 16 23 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 24 C 0.07 0.97 5.23 -3.87 -0.02 0.95 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.66 6.25 -51.93 -0.32 0.34 16 30 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.33 6.26 -51.93 -0.32 1.01 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.38 1.84 9.12 45.56 0.42 2.26 16 39 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 40 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 41 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -33.49 333.02 -9.32 -42.80 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.51 Total: -2.83 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.55 Total: -3.21 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -1.43 Total: -43.50 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.83 Total: -15.53 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.49 -9.32 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405307555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.816 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds