Wall clock time and date at job start Mon Mar 30 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00352 * 2 1 4 4 H 1.48507 * 109.46899 * 270.00107 * 3 2 1 5 5 H 1.48499 * 109.47166 * 29.99367 * 3 2 1 6 6 H 1.48501 * 109.47468 * 149.99933 * 3 2 1 7 7 C 1.37882 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 O 1.42909 * 109.46739 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99646 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46941 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47103 * 64.99911 * 12 11 10 14 14 C 1.46595 * 110.99872 * 63.84599 * 13 12 11 15 15 C 1.53698 * 111.03243 * 179.87576 * 14 13 12 16 16 N 1.45633 * 107.51184 * 303.77474 * 15 14 13 17 17 C 1.46953 * 117.16825 * 180.54709 * 16 15 14 18 18 C 1.55279 * 103.39969 * 197.48547 * 17 16 15 19 19 H 1.08994 * 110.35266 * 265.10580 * 18 17 16 20 20 O 1.42905 * 110.34958 * 142.93565 * 18 17 16 21 21 C 1.55069 * 105.00648 * 24.02174 * 18 17 16 22 22 C 1.48866 * 108.89158 * 63.52402 * 16 15 14 23 23 H 1.09002 * 110.30169 * 51.74349 * 22 16 15 24 24 C 1.47598 * 110.99665 * 189.99845 * 13 12 11 25 25 H 0.96997 * 120.00098 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47425 * 59.99934 * 9 7 2 27 27 H 1.08996 * 109.47414 * 299.99686 * 9 7 2 28 28 H 1.09001 * 109.47211 * 60.00261 * 11 10 9 29 29 H 1.09002 * 109.47229 * 300.00216 * 11 10 9 30 30 H 1.09005 * 109.46893 * 305.00000 * 12 11 10 31 31 H 1.09006 * 109.47097 * 185.00264 * 12 11 10 32 32 H 1.08993 * 109.16536 * 300.27400 * 14 13 12 33 33 H 1.08999 * 109.16894 * 59.47610 * 14 13 12 34 34 H 1.09001 * 109.84826 * 184.27520 * 15 14 13 35 35 H 1.08994 * 109.85076 * 63.27464 * 15 14 13 36 36 H 1.08990 * 110.63573 * 79.00428 * 17 16 15 37 37 H 1.09002 * 110.76712 * 316.02543 * 17 16 15 38 38 H 0.96698 * 113.99893 * 62.89358 * 20 18 17 39 39 H 1.09001 * 110.50235 * 121.50191 * 21 18 17 40 40 H 1.08991 * 110.50309 * 244.19688 * 21 18 17 41 41 H 1.08998 * 109.86497 * 57.92001 * 24 13 12 42 42 H 1.08993 * 109.92888 * 296.91042 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9562 0.0017 13 7 3.4079 -5.8872 1.2569 14 6 2.5506 -6.1883 2.4073 15 6 3.3457 -6.1193 3.7209 16 7 4.4704 -7.0367 3.6010 17 6 5.3723 -7.1472 4.7560 18 6 6.6457 -7.8034 4.1567 19 1 6.6165 -8.8840 4.2958 20 8 7.8186 -7.2567 4.7630 21 6 6.6055 -7.4525 2.6468 22 6 5.3619 -6.5659 2.5056 23 1 5.6167 -5.5160 2.6504 24 6 4.6053 -6.7483 1.1983 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 0.9446 -4.9827 -0.8887 29 1 0.9451 -4.9822 0.8913 30 1 3.3215 -5.7960 -0.8402 31 1 2.1819 -6.9376 -0.0875 32 1 1.7350 -5.4663 2.4445 33 1 2.1359 -7.1897 2.2923 34 1 2.7105 -6.4195 4.5542 35 1 3.7110 -5.1048 3.8795 36 1 4.9362 -7.7858 5.5240 37 1 5.6025 -6.1623 5.1622 38 1 7.8853 -7.4252 5.7129 39 1 7.5018 -6.9032 2.3585 40 1 6.5014 -8.3568 2.0474 41 1 5.2356 -6.4496 0.3607 42 1 4.3080 -7.7907 1.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405307555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:02 Heat of formation + Delta-G solvation = -104.579651 kcal Electronic energy + Delta-G solvation = -21348.374449 eV Core-core repulsion = 18134.398466 eV Total energy + Delta-G solvation = -3213.975983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20360 -39.02138 -37.91916 -36.26842 -34.87706 -33.41583 -31.73359 -29.59010 -29.14182 -28.21816 -24.75407 -24.41040 -24.19683 -22.32497 -21.51077 -20.84541 -18.62098 -18.46061 -17.50376 -17.28462 -16.92575 -16.43300 -16.19055 -15.96245 -15.60015 -15.40863 -15.13039 -14.99111 -14.50748 -14.17560 -13.76841 -13.65656 -13.44654 -13.03817 -12.94028 -12.80526 -12.71004 -12.53640 -12.39169 -12.12892 -12.07708 -11.77448 -11.63063 -11.46431 -11.23634 -10.92445 -10.84783 -10.17643 -9.59682 -9.12865 -8.32485 -6.44389 1.38468 1.41499 1.53686 2.34463 2.73471 2.86894 3.01043 3.22940 3.40568 3.60197 3.66585 3.88806 4.06058 4.10047 4.22206 4.24863 4.30053 4.35765 4.42859 4.51095 4.56030 4.62141 4.68254 4.69169 4.81685 4.85776 4.86101 4.90833 4.97796 5.00472 5.07136 5.15692 5.18971 5.54970 5.71077 5.96914 6.00033 6.15896 6.23083 6.56839 6.86393 6.88420 7.27967 8.79966 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.003843 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.806632 B = 7283.403229 C = 7879.288478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.396 6.396 11 C 0.055 3.945 12 C 0.075 3.925 13 N -0.564 5.564 14 C 0.067 3.933 15 C 0.061 3.939 16 N -0.524 5.524 17 C 0.011 3.989 18 C 0.107 3.893 19 H 0.091 0.909 20 O -0.582 6.582 21 C -0.105 4.105 22 C 0.063 3.937 23 H 0.033 0.967 24 C 0.079 3.921 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.019 1.019 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.020 0.980 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.595 -19.514 8.658 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.135 3.865 10 O -0.316 6.316 11 C -0.022 4.022 12 C -0.052 4.052 13 N -0.290 5.290 14 C -0.061 4.061 15 C -0.067 4.067 16 N -0.250 5.250 17 C -0.117 4.117 18 C 0.048 3.952 19 H 0.109 0.891 20 O -0.390 6.390 21 C -0.143 4.143 22 C -0.046 4.046 23 H 0.051 0.949 24 C -0.048 4.048 25 H 0.080 0.920 26 H 0.002 0.998 27 H -0.001 1.001 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.039 0.961 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.247 0.753 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.645 -19.204 8.050 23.386 hybrid contribution -0.609 0.978 0.650 1.323 sum 10.036 -18.227 8.699 22.552 Atomic orbital electron populations 1.70063 1.07709 1.28612 1.50627 1.25942 0.95958 1.03300 0.93920 0.85203 0.78297 0.77103 0.78923 1.19097 1.19747 1.19177 1.21377 0.93955 0.91004 1.52088 0.92388 1.19772 0.88630 0.84979 0.93106 1.87907 1.34724 1.13912 1.95050 1.22640 0.95589 0.84592 0.99363 1.21996 0.95255 0.95859 0.92091 1.61368 1.08936 1.55838 1.02859 1.22040 0.94954 0.99472 0.89588 1.22037 0.93231 0.93678 0.97800 1.63985 1.07971 1.46979 1.06022 1.23656 0.93857 1.00332 0.93899 1.22843 0.82755 0.97283 0.92351 0.89136 1.86526 1.42951 1.80856 1.28669 1.22174 0.96169 1.00542 0.95418 1.22465 0.92714 0.97021 0.92361 0.94913 1.21971 0.90830 0.95199 0.96813 0.92036 0.99796 1.00091 0.93367 0.94362 0.90056 0.91119 0.91840 0.93317 0.88439 0.96128 0.87990 0.94419 0.75343 0.90500 0.88170 0.90050 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.98 45.63 29.54 68.60 2.03 47.66 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -33.82 9.43 25.60 0.24 -33.58 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 12.29 5.69 71.24 0.41 12.69 16 10 O -0.40 -20.31 10.27 -148.98 -1.53 -21.84 16 11 C 0.06 2.13 5.95 71.98 0.43 2.55 16 12 C 0.08 2.27 5.37 86.30 0.46 2.73 16 13 N -0.56 -17.52 4.59 -895.43 -4.11 -21.63 16 14 C 0.07 1.92 5.34 86.60 0.46 2.38 16 15 C 0.06 1.59 6.04 86.78 0.52 2.11 16 16 N -0.52 -11.91 4.85 -863.87 -4.19 -16.10 16 17 C 0.01 0.20 6.47 87.08 0.56 0.76 16 18 C 0.11 1.72 4.46 32.09 0.14 1.86 16 19 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 20 O -0.58 -9.77 13.30 -148.98 -1.98 -11.75 16 21 C -0.10 -1.97 6.48 31.43 0.20 -1.77 16 22 C 0.06 1.54 2.62 44.38 0.12 1.66 16 23 H 0.03 1.02 8.00 -2.39 -0.02 1.00 16 24 C 0.08 1.97 5.23 85.89 0.45 2.42 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.45 6.25 -2.39 -0.01 1.43 16 30 H 0.08 2.44 8.06 -2.38 -0.02 2.42 16 31 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.06 2.04 6.26 -2.39 -0.01 2.03 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.64 8.02 -2.39 -0.02 0.62 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 38 H 0.40 3.01 9.12 -74.06 -0.68 2.34 16 39 H 0.08 1.57 8.00 -2.39 -0.02 1.55 16 40 H 0.10 1.53 8.02 -2.39 -0.02 1.51 16 41 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.89 333.02 -4.72 -77.62 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.31 Total: 8.17 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.46 Total: -5.29 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -8.01 Total: -94.56 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -3.51 Total: -33.59 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.89 -4.72 -77.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405307555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.961 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds