Wall clock time and date at job start Mon Mar 30 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47154 * 2 1 4 4 H 1.09008 * 109.46813 * 55.59502 * 3 2 1 5 5 N 1.46894 * 109.47176 * 295.59417 * 3 2 1 6 6 C 1.46899 * 110.99906 * 303.21686 * 5 3 2 7 7 C 1.50703 * 109.47065 * 185.08663 * 6 5 3 8 8 O 1.21295 * 119.99892 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00115 * 179.72745 * 7 6 5 10 10 C 1.37096 * 120.00262 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99806 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99852 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00240 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99648 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47201 * 60.00208 * 14 12 10 16 16 H 1.48503 * 109.47016 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46915 * 300.00057 * 14 12 10 18 18 C 1.53000 * 109.46896 * 175.59215 * 3 2 1 19 19 H 1.08996 * 109.48095 * 60.00166 * 18 3 2 20 20 C 1.53097 * 109.48078 * 180.02562 * 18 3 2 21 21 C 1.53174 * 109.16352 * 177.58180 * 20 18 3 22 22 C 1.53183 * 109.04485 * 303.03342 * 21 20 18 23 23 C 1.53092 * 109.16206 * 56.97595 * 22 21 20 24 24 O 1.42902 * 109.48040 * 299.97739 * 18 3 2 25 25 H 1.09005 * 109.46554 * 65.48138 * 1 2 3 26 26 H 1.08996 * 109.47266 * 185.47828 * 1 2 3 27 27 H 1.08996 * 109.47192 * 305.48576 * 1 2 3 28 28 H 1.09000 * 109.46980 * 239.99414 * 2 1 3 29 29 H 1.09000 * 109.46365 * 120.00031 * 2 1 3 30 30 H 1.00893 * 111.00259 * 67.17611 * 5 3 2 31 31 H 1.08996 * 109.47343 * 65.08489 * 6 5 3 32 32 H 1.08997 * 109.47177 * 305.08564 * 6 5 3 33 33 H 0.97003 * 119.99885 * 359.97438 * 9 7 6 34 34 H 0.96996 * 120.00093 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.52104 * 297.49841 * 20 18 3 36 36 H 1.08999 * 109.52223 * 57.68148 * 20 18 3 37 37 H 1.09004 * 109.54556 * 183.16407 * 21 20 18 38 38 H 1.09001 * 109.61142 * 62.94455 * 21 20 18 39 39 H 1.08994 * 109.51881 * 297.06720 * 22 21 20 40 40 H 1.08998 * 109.57466 * 176.91069 * 22 21 20 41 41 H 1.09003 * 109.48075 * 182.41034 * 23 22 21 42 42 H 1.08998 * 109.48955 * 62.37776 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6137 1.9785 0.8480 5 7 1.6392 2.1035 -1.2490 6 6 2.1331 1.3638 -2.4181 7 6 1.8117 2.1345 -3.6727 8 8 1.2283 3.1954 -3.6000 9 7 2.1771 1.6473 -4.8751 10 6 1.8843 2.3482 -6.0164 11 1 1.3613 3.2908 -5.9520 12 6 2.2615 1.8461 -7.2559 13 7 2.8983 0.6993 -7.3343 14 14 1.8632 2.8014 -8.8110 15 1 2.5119 4.1358 -8.7520 16 1 2.3683 2.0568 -9.9924 17 1 0.3923 2.9707 -8.9249 18 6 3.5660 1.4438 0.1109 19 1 3.9926 0.9077 -0.7369 20 6 4.0766 2.8871 0.1115 21 6 5.5987 2.8820 0.2835 22 6 5.9532 2.1391 1.5754 23 6 5.3702 0.7247 1.5179 24 8 3.9561 0.8012 1.3262 25 1 -0.3632 0.4265 -0.9351 26 1 -0.3633 -1.0229 0.0981 27 1 -0.3633 0.5965 0.8367 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.6379 2.2200 -1.2913 31 1 1.6526 0.3863 -2.4591 32 1 3.2124 1.2350 -2.3373 33 1 2.6472 0.8008 -4.9329 34 1 3.1612 0.3487 -8.1996 35 1 3.8182 3.3653 -0.8333 36 1 3.6189 3.4350 0.9352 37 1 5.9626 3.9078 0.3412 38 1 6.0611 2.3782 -0.5654 39 1 5.5335 2.6718 2.4287 40 1 7.0368 2.0825 1.6785 41 1 5.5827 0.2057 2.4526 42 1 5.8205 0.1792 0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594044267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:43 Heat of formation + Delta-G solvation = -99.089523 kcal Electronic energy + Delta-G solvation = -21654.288948 eV Core-core repulsion = 18440.551034 eV Total energy + Delta-G solvation = -3213.737913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80953 -38.25765 -36.68252 -33.90211 -33.62011 -31.62303 -31.22203 -31.01566 -27.45075 -25.79964 -24.37317 -24.08746 -22.60374 -20.26124 -20.06532 -18.99800 -17.89371 -16.93614 -16.17926 -15.74006 -15.00918 -14.75057 -14.65505 -14.58627 -14.14234 -14.12845 -13.88332 -13.46765 -13.16017 -12.88924 -12.64976 -12.24586 -12.09597 -11.80163 -11.50001 -11.47094 -11.42931 -11.05608 -11.03737 -10.81730 -10.68276 -10.48582 -10.43073 -10.19935 -10.10684 -9.48069 -9.36162 -8.43636 -7.97789 -7.92392 -6.39758 -3.80471 3.21317 3.26744 3.31220 3.61736 3.93812 4.16405 4.46968 4.69191 4.79688 4.87395 4.93361 5.07019 5.16409 5.19306 5.23420 5.27463 5.32717 5.40581 5.55512 5.61328 5.71950 5.77185 5.79068 5.84746 5.89155 5.96795 5.97713 6.05283 6.11145 6.23172 6.29289 6.31821 6.34380 6.46542 7.16830 7.34759 7.56756 7.68513 8.08465 8.63923 9.20128 9.56947 10.08880 10.78025 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.004388 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.346207 B = 6379.671897 C = 7002.862151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C 0.098 3.902 4 H 0.088 0.912 5 N -0.654 5.654 6 C 0.043 3.957 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.565 5.565 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.098 3.902 19 H 0.058 0.942 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.156 4.156 23 C 0.064 3.936 24 O -0.381 6.381 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.354 0.646 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -2.936 16.256 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C -0.012 4.012 4 H 0.106 0.894 5 N -0.288 5.288 6 C -0.090 4.090 7 C 0.228 3.772 8 O -0.466 6.466 9 N -0.202 5.202 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.040 3.960 19 H 0.076 0.924 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.193 4.193 23 C -0.013 4.013 24 O -0.300 6.300 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.042 -1.942 16.260 16.867 hybrid contribution -0.122 -0.843 -1.083 1.378 sum 3.921 -2.785 15.177 15.920 Atomic orbital electron populations 1.21781 0.95806 1.01672 1.01847 1.22237 0.96136 0.98597 1.02956 1.21480 0.93076 0.93089 0.93597 0.89388 1.60082 1.19727 1.49673 0.99288 1.21789 1.01012 0.95446 0.90755 1.19832 0.85247 0.87881 0.84282 1.90522 1.45787 1.23701 1.86540 1.41861 1.51453 1.22153 1.04737 1.19650 1.34946 1.05114 0.83156 0.88003 1.25246 0.96887 0.96394 0.99375 1.69602 1.39640 1.18870 1.26326 0.85930 0.78901 0.79246 0.80212 1.19905 1.21004 1.19933 1.22067 0.94650 0.92893 0.86410 0.92429 1.22069 0.94502 0.97002 1.04199 1.21633 0.96856 1.00658 0.97171 1.22188 1.00821 0.97289 0.99036 1.22508 0.81678 0.95900 1.01252 1.87838 1.21901 1.79123 1.41133 0.92692 0.92748 0.92632 0.91646 0.90832 0.82511 0.93392 0.89756 0.77545 0.91865 0.89037 0.91517 0.91635 0.91958 0.91265 0.91340 0.89246 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.54 37.16 0.35 -1.40 16 2 C -0.16 -1.96 5.00 -26.73 -0.13 -2.09 16 3 C 0.10 1.30 2.34 -67.72 -0.16 1.14 16 4 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 5 N -0.65 -10.43 5.17 -108.00 -0.56 -10.99 16 6 C 0.04 0.75 5.31 -4.98 -0.03 0.72 16 7 C 0.44 10.42 7.83 -10.98 -0.09 10.33 16 8 O -0.58 -15.75 15.89 5.54 0.09 -15.67 16 9 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 14 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.10 1.28 1.95 -26.68 -0.05 1.23 16 19 H 0.06 0.80 6.37 -51.93 -0.33 0.47 16 20 C -0.14 -1.84 5.22 -26.59 -0.14 -1.98 16 21 C -0.13 -1.42 6.03 -26.55 -0.16 -1.58 16 22 C -0.16 -1.50 6.14 -26.59 -0.16 -1.66 16 23 C 0.06 0.65 6.84 37.20 0.25 0.90 16 24 O -0.38 -4.81 9.66 -35.23 -0.34 -5.15 16 25 H 0.05 0.68 7.21 -51.93 -0.37 0.31 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.84 6.22 -51.93 -0.32 0.52 16 29 H 0.07 0.89 7.55 -51.93 -0.39 0.49 16 30 H 0.35 5.77 7.44 -39.30 -0.29 5.48 16 31 H 0.05 0.78 6.45 -51.93 -0.33 0.45 16 32 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16 33 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.09 1.42 7.69 -51.93 -0.40 1.02 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -30.21 331.18 -7.55 -37.76 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.83 Total: 13.67 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.55 Total: -2.39 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.11 Total: -49.32 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.25 Total: -20.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.21 -7.55 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594044267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.329 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds