Wall clock time and date at job start Mon Mar 30 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46418 * 55.00091 * 12 11 10 14 14 N 1.46896 * 109.47035 * 294.99960 * 12 11 10 15 15 C 1.50700 * 109.47081 * 174.99816 * 12 11 10 16 16 O 1.21277 * 119.99593 * 100.00230 * 15 12 11 17 17 N 1.34782 * 120.00134 * 280.00244 * 15 12 11 18 18 C 1.47019 * 125.64510 * 0.02614 * 17 15 12 19 19 C 1.54328 * 107.26798 * 181.02377 * 18 17 15 20 20 C 1.55158 * 102.94324 * 22.19061 * 19 18 17 21 21 H 1.08998 * 111.00133 * 82.57108 * 20 19 18 22 22 C 1.52994 * 111.00600 * 206.38580 * 20 19 18 23 23 O 1.42900 * 109.47321 * 293.54679 * 22 20 19 24 24 C 1.47422 * 125.64521 * 179.71671 * 17 15 12 25 25 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 27 27 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 28 28 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 29 29 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 30 30 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 31 31 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 32 32 H 1.00898 * 110.99437 * 176.04510 * 14 12 11 33 33 H 1.00891 * 111.00189 * 299.99691 * 14 12 11 34 34 H 1.09000 * 109.88288 * 300.43609 * 18 17 15 35 35 H 1.09003 * 109.88668 * 61.60541 * 18 17 15 36 36 H 1.09003 * 110.72186 * 140.55501 * 19 18 17 37 37 H 1.08999 * 110.71934 * 263.83010 * 19 18 17 38 38 H 1.09009 * 109.46985 * 53.54385 * 22 20 19 39 39 H 1.08996 * 109.47255 * 173.54589 * 22 20 19 40 40 H 0.96697 * 114.00310 * 179.97438 * 23 22 20 41 41 H 1.08997 * 110.36856 * 274.74442 * 24 17 15 42 42 H 1.08996 * 110.37038 * 37.07014 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4745 -6.1501 -0.0024 13 1 3.1586 -6.0434 0.8395 14 7 3.2377 -6.1414 -1.2576 15 6 1.7251 -7.4517 0.1210 16 8 1.5129 -8.1249 -0.8652 17 7 1.2907 -7.8675 1.3272 18 6 1.4778 -7.1529 2.5983 19 6 0.8400 -8.0160 3.7073 20 6 0.8280 -9.4349 3.0797 21 1 1.7951 -9.9232 3.1993 22 6 -0.2919 -10.2893 3.6769 23 8 -0.0163 -10.5392 5.0566 24 6 0.5437 -9.1111 1.5894 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5574 0.8881 27 1 0.6247 -2.5564 -0.8919 28 1 2.8726 -3.6039 -0.8910 29 1 2.8713 -3.6047 0.8890 30 1 0.8533 -5.0450 0.8877 31 1 0.8540 -5.0447 -0.8923 32 1 3.9453 -6.8606 -1.2553 33 1 2.6255 -6.2389 -2.0536 34 1 2.5416 -7.0215 2.7966 35 1 0.9842 -6.1821 2.5540 36 1 1.4516 -7.9985 4.6094 37 1 -0.1747 -7.6805 3.9215 38 1 -1.2405 -9.7600 3.5859 39 1 -0.3515 -11.2365 3.1409 40 1 -0.6868 -11.0763 5.5006 41 1 -0.5230 -8.9538 1.4298 42 1 0.9092 -9.9151 0.9506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691575588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:23 Heat of formation + Delta-G solvation = -110.714896 kcal Electronic energy + Delta-G solvation = -20915.773141 eV Core-core repulsion = 17701.531114 eV Total energy + Delta-G solvation = -3214.242027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45749 -38.42220 -36.67511 -35.80512 -33.62221 -32.35960 -31.30753 -29.79137 -27.94295 -26.26460 -24.39022 -23.30257 -22.03005 -20.77574 -20.26727 -19.27966 -17.82392 -17.40541 -16.72549 -16.68061 -15.88925 -15.48304 -15.23743 -14.57109 -14.12756 -13.87663 -13.69887 -13.63090 -13.31024 -13.05803 -12.98238 -12.79795 -12.26429 -11.96377 -11.59188 -11.44055 -11.21736 -11.06723 -10.97372 -10.89766 -10.65620 -10.40839 -10.23027 -10.07316 -9.73468 -9.54281 -8.85634 -8.71568 -8.41040 -8.25549 -6.29334 -3.97321 2.49653 2.77010 3.48094 3.50569 3.64616 3.69002 4.17519 4.23150 4.46834 4.60777 4.62762 4.74199 4.88443 4.91073 4.97302 5.07999 5.13610 5.18334 5.32403 5.40198 5.47968 5.51120 5.57187 5.69938 5.83484 5.89842 5.99024 6.10007 6.34749 6.69788 6.85933 7.04914 7.09322 7.16035 7.33206 7.46258 7.53412 7.65332 8.00980 8.31471 8.54804 8.96445 9.74816 11.11339 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.003463 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.216587 B = 8082.698373 C = 8864.467636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.598 4.598 8 H 0.049 0.951 9 C 0.007 3.993 10 C -0.092 4.092 11 C -0.104 4.104 12 C 0.082 3.918 13 H 0.100 0.900 14 N -0.811 5.811 15 C 0.499 3.501 16 O -0.551 6.551 17 N -0.616 5.616 18 C 0.093 3.907 19 C -0.120 4.120 20 C -0.103 4.103 21 H 0.091 0.909 22 C 0.088 3.912 23 O -0.571 6.571 24 C 0.111 3.889 25 H 0.268 0.732 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.339 0.661 33 H 0.350 0.650 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.381 0.619 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -21.899 8.544 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.636 4.636 8 H 0.067 0.933 9 C -0.030 4.030 10 C -0.130 4.130 11 C -0.142 4.142 12 C -0.033 4.033 13 H 0.118 0.882 14 N -0.339 5.339 15 C 0.286 3.714 16 O -0.428 6.428 17 N -0.351 5.351 18 C -0.030 4.030 19 C -0.157 4.157 20 C -0.122 4.122 21 H 0.110 0.890 22 C 0.009 3.991 23 O -0.377 6.377 24 C -0.012 4.012 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.252 -19.451 7.977 21.060 hybrid contribution -0.765 -3.104 0.063 3.197 sum 0.488 -22.554 8.040 23.950 Atomic orbital electron populations 1.70782 1.06900 1.30495 1.47118 1.25852 0.96579 1.02737 0.93942 0.83557 0.74876 0.75389 0.76503 1.20867 1.21490 1.21450 1.22083 0.94327 0.92079 1.55141 0.93310 1.19246 0.94729 0.93460 0.95598 1.21403 0.98470 0.91690 1.01409 1.21661 0.96649 0.94105 1.01825 1.21716 0.95741 0.90608 0.95279 0.88204 1.59057 1.17337 1.54267 1.03278 1.22303 0.79022 0.88870 0.81158 1.90670 1.58250 1.57663 1.36230 1.48598 1.56315 1.22717 1.07504 1.22227 1.01451 0.96603 0.82716 1.22638 1.02230 0.93224 0.97646 1.22368 0.99876 0.96150 0.93846 0.89029 1.22023 0.96760 0.98071 0.82219 1.86466 1.52134 1.75808 1.23271 1.22136 0.96748 0.87696 0.94666 0.92208 0.97912 0.97714 0.91630 0.93506 0.91988 0.92016 0.84934 0.83575 0.90907 0.90247 0.89417 0.90310 0.93091 0.93267 0.77171 0.91283 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.70 13.65 55.43 0.76 -27.95 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 25.83 29.90 -169.99 -5.08 20.74 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.48 9.11 -34.44 -0.31 -17.80 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 10 C -0.09 -1.92 5.04 -26.73 -0.13 -2.06 16 11 C -0.10 -1.78 4.83 -26.73 -0.13 -1.91 16 12 C 0.08 1.19 2.56 -68.87 -0.18 1.01 16 13 H 0.10 1.32 7.46 -51.93 -0.39 0.94 16 14 N -0.81 -11.62 8.44 -5.65 -0.05 -11.67 16 15 C 0.50 7.31 7.09 -10.98 -0.08 7.23 16 16 O -0.55 -9.61 16.50 5.56 0.09 -9.52 16 17 N -0.62 -7.42 3.32 -170.38 -0.57 -7.99 16 18 C 0.09 0.92 6.19 -3.06 -0.02 0.91 16 19 C -0.12 -0.99 6.28 -24.89 -0.16 -1.14 16 20 C -0.10 -0.83 3.34 -88.35 -0.30 -1.13 16 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.09 0.56 6.49 37.15 0.24 0.81 16 23 O -0.57 -4.00 13.51 -35.23 -0.48 -4.47 16 24 C 0.11 1.11 6.38 -2.41 -0.02 1.09 16 25 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 26 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 27 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 28 H 0.06 1.43 7.75 -51.93 -0.40 1.02 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.01 6.66 -51.93 -0.35 0.66 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.34 4.21 9.06 -39.29 -0.36 3.86 16 33 H 0.35 5.19 8.58 -39.30 -0.34 4.85 16 34 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 35 H 0.08 0.85 6.76 -51.93 -0.35 0.49 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 38 H 0.05 0.30 8.11 -51.92 -0.42 -0.13 16 39 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.38 0.99 9.12 45.56 0.42 1.40 16 41 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.08 0.83 8.03 -51.93 -0.42 0.42 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -35.18 340.83 -7.77 -42.94 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.29 Total: 5.45 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.29 Total: -12.67 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.14 Total: -47.61 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.38 Total: -14.00 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.18 -7.77 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691575588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.771 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds