Wall clock time and date at job start Mon Mar 30 2020 04:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 110.88783 * 2 1 4 4 C 1.55130 * 111.19348 * 236.06453 * 2 1 3 5 5 N 1.47423 * 104.72060 * 279.19202 * 4 2 1 6 6 C 1.34774 * 125.64659 * 155.81714 * 5 4 2 7 7 O 1.21283 * 119.99957 * 359.71661 * 6 5 4 8 8 C 1.50701 * 120.00315 * 179.71433 * 6 5 4 9 9 H 1.09000 * 109.46801 * 39.99785 * 8 6 5 10 10 N 1.46897 * 109.47531 * 159.99930 * 8 6 5 11 11 C 1.53007 * 109.47050 * 280.00334 * 8 6 5 12 12 C 1.52998 * 109.46873 * 174.99536 * 11 8 6 13 13 C 1.50699 * 109.46700 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.47025 * 108.70499 * 335.55039 * 5 4 2 22 22 C 1.54325 * 107.26862 * 1.29015 * 21 5 4 23 23 H 1.09003 * 110.71449 * 263.82589 * 22 21 5 24 24 O 1.42898 * 110.71716 * 140.73355 * 22 21 5 25 25 H 1.09003 * 109.47537 * 296.12173 * 1 2 3 26 26 H 1.08994 * 109.47435 * 56.12051 * 1 2 3 27 27 H 1.08998 * 109.47102 * 176.12578 * 1 2 3 28 28 H 1.09002 * 109.47170 * 183.88506 * 3 2 1 29 29 H 1.09005 * 109.46401 * 303.88117 * 3 2 1 30 30 H 1.08997 * 109.46903 * 63.87516 * 3 2 1 31 31 H 1.08999 * 110.49641 * 160.34837 * 4 2 1 32 32 H 1.09002 * 110.33996 * 37.95565 * 4 2 1 33 33 H 1.00905 * 110.99619 * 60.00005 * 10 8 6 34 34 H 1.00898 * 111.00131 * 183.95542 * 10 8 6 35 35 H 1.09004 * 109.47180 * 54.99632 * 11 8 6 36 36 H 1.08997 * 109.46702 * 294.99803 * 11 8 6 37 37 H 1.09004 * 109.47139 * 60.00071 * 12 11 8 38 38 H 1.08997 * 109.47675 * 299.99671 * 12 11 8 39 39 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.88129 * 120.70797 * 21 5 4 41 41 H 1.08994 * 109.88153 * 241.87480 * 21 5 4 42 42 H 0.96696 * 114.00203 * 61.45267 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8075 -1.2000 5 7 2.0138 -2.2162 -0.7723 6 6 1.9470 -3.2835 -1.5926 7 8 1.9419 -3.1249 -2.7950 8 6 1.8788 -4.6741 -1.0158 9 1 1.2272 -4.6733 -0.1419 10 7 1.3432 -5.5972 -2.0251 11 6 3.2819 -5.1254 -0.6052 12 6 3.1966 -6.4839 0.0934 13 6 4.5787 -6.9286 0.4972 14 1 5.4325 -6.3047 0.2779 15 6 4.7533 -8.1323 1.1467 16 7 5.9594 -8.5203 1.4995 17 14 3.2768 -9.2120 1.5254 18 1 3.0395 -10.1416 0.3918 19 1 2.0778 -8.3589 1.7251 20 1 3.5391 -9.9941 2.7602 21 6 2.0285 -2.2643 0.6971 22 6 2.0861 -0.8074 1.2026 23 1 3.1133 -0.5154 1.4212 24 8 1.2584 -0.6392 2.3552 25 1 -0.3634 0.4525 0.9227 26 1 -0.3634 0.5728 -0.8531 27 1 -0.3633 -1.0253 -0.0694 28 1 3.1629 1.4034 -0.0696 29 1 1.6697 1.9731 -0.8532 30 1 1.7822 1.9302 0.9227 31 1 3.1252 -0.5272 -1.3985 32 1 1.4764 -0.6458 -2.0857 33 1 1.9301 -5.6158 -2.8457 34 1 1.2271 -6.5236 -1.6425 35 1 3.7144 -4.3928 0.0764 36 1 3.9098 -5.2116 -1.4920 37 1 2.7642 -7.2165 -0.5882 38 1 2.5688 -6.3977 0.9802 39 1 6.0823 -9.3672 1.9561 40 1 1.1218 -2.7475 1.0611 41 1 2.9063 -2.8111 1.0413 42 1 1.5210 -1.1825 3.1108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691579582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:56 Heat of formation + Delta-G solvation = -123.542443 kcal Electronic energy + Delta-G solvation = -21753.159083 eV Core-core repulsion = 18538.360811 eV Total energy + Delta-G solvation = -3214.798271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59270 -39.69554 -37.20288 -36.51221 -34.87255 -34.55705 -32.12051 -29.74826 -29.10442 -28.25700 -27.32075 -25.09956 -23.77215 -22.07467 -20.52319 -20.09291 -19.01687 -18.48552 -18.08457 -17.35403 -16.53353 -16.24431 -16.00232 -15.66600 -15.50645 -15.38663 -14.79679 -14.66831 -14.52357 -14.17831 -14.05514 -13.71069 -13.56165 -13.33597 -13.03330 -12.94522 -12.84079 -12.63727 -12.14600 -12.03833 -11.93795 -11.90092 -11.69300 -11.43205 -11.30282 -11.16699 -10.79142 -10.73840 -9.79679 -9.66821 -8.30778 -6.36504 1.38249 1.39017 1.50172 1.51281 1.81575 2.35297 3.04840 3.16924 3.21697 3.45636 3.65855 3.67046 3.93277 4.02270 4.09639 4.13501 4.21966 4.31820 4.49770 4.57546 4.62508 4.69270 4.72474 4.81378 4.87720 4.91280 4.97818 5.02700 5.12892 5.19200 5.32274 5.36795 5.42748 5.44067 5.60629 5.99952 6.23570 6.36872 6.44817 6.71584 6.85919 7.05777 7.28501 8.85929 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.004634 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.599465 B = 6040.306951 C = 6568.217580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.131 4.131 4 C 0.109 3.891 5 N -0.613 5.613 6 C 0.537 3.463 7 O -0.572 6.572 8 C 0.086 3.914 9 H 0.112 0.888 10 N -0.831 5.831 11 C -0.116 4.116 12 C -0.004 4.004 13 C -0.534 4.534 14 H 0.027 0.973 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.238 1.238 20 H -0.287 1.287 21 C 0.060 3.940 22 C 0.110 3.890 23 H 0.090 0.910 24 O -0.559 6.559 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.346 0.654 34 H 0.356 0.644 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.032 0.968 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 17.827 1.518 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.189 4.189 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.326 3.674 7 O -0.451 6.451 8 C -0.029 4.029 9 H 0.130 0.870 10 N -0.363 5.363 11 C -0.156 4.156 12 C -0.041 4.041 13 C -0.572 4.572 14 H 0.045 0.955 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.161 1.161 20 H -0.213 1.213 21 C -0.063 4.063 22 C 0.050 3.950 23 H 0.107 0.893 24 O -0.367 6.367 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.562 18.609 0.526 22.458 hybrid contribution 1.406 -1.870 0.586 2.412 sum -11.156 16.738 1.111 20.146 Atomic orbital electron populations 1.21512 0.92855 1.01207 1.02356 1.21838 0.97020 0.95988 0.91739 1.21716 1.01259 0.92735 1.03172 1.22555 1.01416 0.79342 0.98050 1.48278 1.72705 1.06287 1.07459 1.20514 0.74700 0.86369 0.85808 1.90628 1.51728 1.86609 1.16119 1.21373 0.96386 0.89339 0.95826 0.86983 1.58741 1.55390 1.13678 1.08474 1.22004 0.94967 0.98671 0.99989 1.19482 0.95306 0.93326 0.96019 1.21396 0.93524 1.04700 1.37579 0.95486 1.26039 0.98973 0.99281 0.94860 1.70075 1.24114 1.23025 1.41999 0.85641 0.80125 0.78862 0.77914 1.19393 1.16051 1.21274 1.23099 1.03379 1.00272 0.79569 1.22791 0.94735 0.91149 0.86310 0.89273 1.86479 1.57202 1.69164 1.23840 0.91095 0.92158 0.94259 0.91519 0.91314 0.91125 0.90600 0.91060 0.84093 0.82877 0.91759 0.93995 0.95927 0.94998 0.92480 0.89796 0.90349 0.75106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.18 71.98 0.59 -1.61 16 2 C -0.07 -1.10 0.89 -50.71 -0.04 -1.15 16 3 C -0.13 -1.69 8.68 71.98 0.62 -1.06 16 4 C 0.11 2.40 5.85 86.93 0.51 2.91 16 5 N -0.61 -16.07 3.31 -811.36 -2.69 -18.76 16 6 C 0.54 17.78 7.10 87.66 0.62 18.40 16 7 O -0.57 -22.72 16.50 -3.04 -0.05 -22.77 16 8 C 0.09 2.73 2.62 44.17 0.12 2.84 16 9 H 0.11 3.18 7.46 -2.39 -0.02 3.17 16 10 N -0.83 -26.31 8.94 -171.80 -1.54 -27.84 16 11 C -0.12 -4.32 4.77 30.60 0.15 -4.18 16 12 C 0.00 -0.17 3.81 29.85 0.11 -0.05 16 13 C -0.53 -29.60 9.66 25.60 0.25 -29.35 16 14 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 15 C 0.01 0.31 5.47 84.65 0.46 0.77 16 16 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 17 Si 0.95 42.03 27.47 68.60 1.88 43.91 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.06 1.23 5.64 86.73 0.49 1.72 16 22 C 0.11 1.77 3.56 31.78 0.11 1.89 16 23 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 24 O -0.56 -8.17 12.17 -148.98 -1.81 -9.98 16 25 H 0.07 1.24 7.53 -2.39 -0.02 1.22 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.84 7.91 -2.39 -0.02 0.82 16 28 H 0.07 0.77 8.07 -2.39 -0.02 0.75 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.59 7.99 -2.39 -0.02 1.57 16 32 H 0.07 1.75 7.95 -2.39 -0.02 1.73 16 33 H 0.35 11.42 8.58 -89.69 -0.77 10.65 16 34 H 0.36 10.45 7.55 -89.70 -0.68 9.77 16 35 H 0.06 2.33 6.66 -2.39 -0.02 2.31 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.02 0.93 6.29 -2.39 -0.02 0.91 16 38 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.08 1.65 7.76 -2.39 -0.02 1.64 16 41 H 0.08 1.67 6.75 -2.39 -0.02 1.66 16 42 H 0.40 2.96 9.11 -74.06 -0.67 2.29 16 Total: -1.00 -71.44 333.06 -1.05 -72.50 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.14 Total: 30.01 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.99 Total: -8.86 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.92 Total: -104.80 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.86 Total: -32.75 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.91 kcal Total: -71.44 -1.05 -72.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691579582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.044 kcal (2) G-P(sol) polarization free energy of solvation -71.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds