Wall clock time and date at job start Mon Mar 30 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.53176 * 109.54661 * 274.56340 * 18 17 15 20 20 C 1.53096 * 109.16256 * 183.14938 * 19 18 17 21 21 O 1.42902 * 109.41597 * 57.60801 * 20 19 18 22 22 C 1.42912 * 114.09734 * 298.84294 * 21 20 19 23 23 C 1.53088 * 109.41438 * 61.15613 * 22 21 20 24 24 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00896 * 110.99864 * 296.04610 * 14 12 11 32 32 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 33 33 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 34 34 H 1.09004 * 109.53749 * 34.83188 * 18 17 15 35 35 H 1.08993 * 109.52134 * 303.05481 * 19 18 17 36 36 H 1.08999 * 109.52367 * 63.24539 * 19 18 17 37 37 H 1.08998 * 109.47806 * 297.62627 * 20 19 18 38 38 H 1.08998 * 109.47926 * 177.58825 * 20 19 18 39 39 H 1.09003 * 109.47712 * 301.17712 * 22 21 20 40 40 H 1.08992 * 109.48971 * 181.14638 * 22 21 20 41 41 H 1.09004 * 109.52292 * 182.48599 * 23 22 21 42 42 H 1.08998 * 109.52779 * 62.29757 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 1 5.6267 -4.6179 0.8429 14 7 5.6728 -4.7366 -1.2541 15 6 7.5633 -4.0811 0.1248 16 8 8.2529 -4.2345 -0.8610 17 7 8.1401 -3.9121 1.3311 18 6 9.6002 -3.9144 1.4517 19 6 10.1007 -5.3555 1.5894 20 6 11.6179 -5.3432 1.7937 21 8 11.9355 -4.5633 2.9483 22 6 11.5335 -3.1950 2.8568 23 6 10.0129 -3.1211 2.6953 24 1 -0.4849 0.8402 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 3.6584 -3.1503 0.8903 28 1 3.6578 -3.1507 -0.8897 29 1 5.9148 -2.1229 -0.8898 30 1 5.9147 -2.1229 0.8901 31 1 4.6691 -4.8057 -1.3303 32 1 6.0637 -4.2557 -2.0503 33 1 7.5886 -3.7896 2.1196 34 1 10.0399 -3.4574 0.5651 35 1 9.6215 -5.8271 2.4473 36 1 9.8596 -5.9130 0.6843 37 1 12.0991 -4.9082 0.9177 38 1 11.9740 -6.3636 1.9351 39 1 12.0136 -2.7320 1.9947 40 1 11.8287 -2.6678 3.7639 41 1 9.7089 -2.0805 2.5811 42 1 9.5319 -3.5475 3.5755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691591565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:31 Heat of formation + Delta-G solvation = -109.838251 kcal Electronic energy + Delta-G solvation = -20822.538936 eV Core-core repulsion = 17608.334922 eV Total energy + Delta-G solvation = -3214.204013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40819 -39.13315 -36.28410 -35.34244 -33.38609 -31.82907 -31.50823 -31.48072 -28.25836 -26.10561 -24.28560 -23.97178 -22.22353 -20.79732 -20.24448 -20.06124 -17.48095 -17.06963 -16.76981 -16.37016 -15.83696 -15.30853 -14.98658 -14.95288 -14.63310 -14.36623 -14.14516 -13.85842 -13.46171 -13.29401 -12.76273 -12.64195 -12.41014 -12.06015 -11.87876 -11.71274 -11.46406 -11.29589 -11.07297 -10.82949 -10.77852 -10.22638 -10.06098 -9.90876 -9.82820 -9.53405 -9.26814 -9.23515 -8.60727 -8.56322 -6.10249 -4.08857 2.62161 2.94611 3.25663 3.33371 3.35911 3.51328 4.28033 4.39436 4.44543 4.57346 4.65565 4.73881 4.78594 4.83420 5.05816 5.11450 5.16534 5.20379 5.23953 5.30832 5.33284 5.44979 5.61296 5.62697 5.70436 5.78892 5.88211 6.08123 6.29424 6.38564 6.50202 6.76889 6.80466 7.07942 7.19003 7.31836 7.40867 7.53181 7.72575 8.18033 8.46952 8.94212 9.52165 11.03165 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.003348 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.016238 B = 8361.755353 C = 9059.785252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.150 4.150 12 C 0.076 3.924 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.526 3.474 16 O -0.534 6.534 17 N -0.729 5.729 18 C 0.145 3.855 19 C -0.167 4.167 20 C 0.064 3.936 21 O -0.383 6.383 22 C 0.065 3.935 23 C -0.165 4.165 24 H 0.263 0.737 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.353 0.647 32 H 0.349 0.651 33 H 0.402 0.598 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.052 -8.158 5.666 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.190 4.190 12 C -0.040 4.040 13 H 0.118 0.882 14 N -0.362 5.362 15 C 0.312 3.688 16 O -0.409 6.409 17 N -0.382 5.382 18 C 0.040 3.960 19 C -0.205 4.205 20 C -0.014 4.014 21 O -0.302 6.302 22 C -0.012 4.012 23 C -0.203 4.203 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.869 -8.869 5.367 25.109 hybrid contribution -0.691 2.066 -0.059 2.179 sum 22.179 -6.803 5.308 23.798 Atomic orbital electron populations 1.69921 1.06300 1.26930 1.51002 1.25045 0.94742 0.99209 0.94528 0.86768 0.80270 0.83637 0.78521 1.20303 1.21331 1.19135 1.21140 0.89474 0.94480 1.50981 0.91020 1.19557 0.97187 0.92086 0.96200 1.21482 0.90828 1.00349 1.01237 1.22445 0.99155 0.94667 1.02702 1.21427 0.90907 0.95725 0.95905 0.88161 1.58675 1.16912 1.57451 1.03204 1.20753 0.90668 0.74727 0.82653 1.90653 1.64978 1.48182 1.37119 1.46064 1.06908 1.75127 1.10072 1.20909 0.80858 0.95516 0.98714 1.22614 0.96809 0.97601 1.03519 1.22574 0.94005 0.96390 0.88394 1.87943 1.80981 1.21085 1.40202 1.22536 0.92769 0.83372 1.02564 1.22516 0.97912 1.01600 0.98301 0.92692 0.96673 0.97200 0.92392 0.92720 0.91771 0.91600 0.83192 0.83748 0.76395 0.89420 0.90748 0.90097 0.92872 0.88527 0.92831 0.88330 0.89946 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.81 4.92 -26.73 -0.13 -1.95 16 11 C -0.15 -2.18 4.84 -26.73 -0.13 -2.31 16 12 C 0.08 0.98 3.21 -68.86 -0.22 0.76 16 13 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 14 N -0.83 -11.17 8.94 -5.65 -0.05 -11.22 16 15 C 0.53 7.02 7.05 -10.99 -0.08 6.94 16 16 O -0.53 -8.88 15.91 5.56 0.09 -8.79 16 17 N -0.73 -7.43 5.08 -53.63 -0.27 -7.70 16 18 C 0.14 1.37 2.54 -67.75 -0.17 1.20 16 19 C -0.17 -1.51 5.72 -26.59 -0.15 -1.66 16 20 C 0.06 0.51 6.84 37.21 0.25 0.77 16 21 O -0.38 -3.53 10.77 -35.23 -0.38 -3.90 16 22 C 0.06 0.47 6.84 37.20 0.25 0.72 16 23 C -0.17 -1.21 5.61 -26.59 -0.15 -1.35 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.97 6.87 -51.93 -0.36 0.61 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.35 4.49 7.55 -39.29 -0.30 4.19 16 32 H 0.35 4.84 8.58 -39.29 -0.34 4.51 16 33 H 0.40 3.25 8.61 -40.82 -0.35 2.90 16 34 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -32.86 337.58 -7.65 -40.51 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.16 Total: 6.44 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.07 Total: -10.42 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.45 Total: -45.75 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.29 Total: -12.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.86 -7.65 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691591565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.324 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds