Wall clock time and date at job start Mon Mar 30 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.53176 * 109.54661 * 274.56340 * 18 17 15 20 20 C 1.53096 * 109.16256 * 183.14938 * 19 18 17 21 21 O 1.42902 * 109.41597 * 57.60801 * 20 19 18 22 22 C 1.42912 * 114.09734 * 298.84294 * 21 20 19 23 23 C 1.53088 * 109.41438 * 61.15613 * 22 21 20 24 24 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00896 * 110.99864 * 296.04610 * 14 12 11 32 32 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 33 33 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 34 34 H 1.09004 * 109.53749 * 34.83188 * 18 17 15 35 35 H 1.08993 * 109.52134 * 303.05481 * 19 18 17 36 36 H 1.08999 * 109.52367 * 63.24539 * 19 18 17 37 37 H 1.08998 * 109.47806 * 297.62627 * 20 19 18 38 38 H 1.08998 * 109.47926 * 177.58825 * 20 19 18 39 39 H 1.09003 * 109.47712 * 301.17712 * 22 21 20 40 40 H 1.08992 * 109.48971 * 181.14638 * 22 21 20 41 41 H 1.09004 * 109.52292 * 182.48599 * 23 22 21 42 42 H 1.08998 * 109.52779 * 62.29757 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 1 5.6267 -4.6179 0.8429 14 7 5.6728 -4.7366 -1.2541 15 6 7.5633 -4.0811 0.1248 16 8 8.2529 -4.2345 -0.8610 17 7 8.1401 -3.9121 1.3311 18 6 9.6002 -3.9144 1.4517 19 6 10.1007 -5.3555 1.5894 20 6 11.6179 -5.3432 1.7937 21 8 11.9355 -4.5633 2.9483 22 6 11.5335 -3.1950 2.8568 23 6 10.0129 -3.1211 2.6953 24 1 -0.4849 0.8402 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6809 -0.8904 27 1 3.6584 -3.1503 0.8903 28 1 3.6578 -3.1507 -0.8897 29 1 5.9148 -2.1229 -0.8898 30 1 5.9147 -2.1229 0.8901 31 1 4.6691 -4.8057 -1.3303 32 1 6.0637 -4.2557 -2.0503 33 1 7.5886 -3.7896 2.1196 34 1 10.0399 -3.4574 0.5651 35 1 9.6215 -5.8271 2.4473 36 1 9.8596 -5.9130 0.6843 37 1 12.0991 -4.9082 0.9177 38 1 11.9740 -6.3636 1.9351 39 1 12.0136 -2.7320 1.9947 40 1 11.8287 -2.6678 3.7639 41 1 9.7089 -2.0805 2.5811 42 1 9.5319 -3.5475 3.5755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691591565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:31 Heat of formation + Delta-G solvation = -135.300015 kcal Electronic energy + Delta-G solvation = -20823.643040 eV Core-core repulsion = 17608.334922 eV Total energy + Delta-G solvation = -3215.308118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30463 -39.93444 -37.49884 -36.26458 -35.22333 -33.27769 -32.61828 -32.10487 -29.72976 -27.36910 -25.33213 -24.60760 -23.64825 -21.82643 -21.55720 -21.00898 -18.89847 -18.48870 -17.84369 -16.99932 -16.67104 -16.44334 -16.24874 -15.95702 -15.87738 -15.51506 -15.26294 -14.88307 -14.63818 -14.35471 -14.25802 -13.82255 -13.75221 -13.33764 -13.02051 -12.66014 -12.53784 -12.41341 -12.33717 -11.96809 -11.80292 -11.73384 -11.47386 -11.42977 -11.33586 -10.92671 -10.77749 -10.54957 -10.12046 -9.67178 -8.30521 -6.34530 1.34904 1.35829 1.47594 1.58010 2.06702 2.34606 2.92999 3.05189 3.60015 3.64865 3.73971 3.79287 3.97304 3.99240 4.06308 4.08588 4.24832 4.36274 4.43462 4.49011 4.56033 4.69329 4.72913 4.76691 4.82346 4.95379 5.02445 5.04686 5.05347 5.10252 5.17053 5.46014 5.50460 5.57993 5.66173 6.05387 6.20787 6.27372 6.46864 6.52820 6.74432 7.22061 7.30535 8.86245 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.003348 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.016238 B = 8361.755353 C = 9059.785252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.136 4.136 12 C 0.082 3.918 13 H 0.119 0.881 14 N -0.835 5.835 15 C 0.525 3.475 16 O -0.571 6.571 17 N -0.715 5.715 18 C 0.142 3.858 19 C -0.161 4.161 20 C 0.065 3.935 21 O -0.398 6.398 22 C 0.060 3.940 23 C -0.156 4.156 24 H 0.266 0.734 25 H 0.022 0.978 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.356 0.644 32 H 0.346 0.654 33 H 0.414 0.586 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.102 -7.447 6.868 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.176 4.176 12 C -0.034 4.034 13 H 0.136 0.864 14 N -0.367 5.367 15 C 0.311 3.689 16 O -0.450 6.450 17 N -0.367 5.367 18 C 0.037 3.963 19 C -0.200 4.200 20 C -0.013 4.013 21 O -0.317 6.317 22 C -0.017 4.017 23 C -0.194 4.194 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.134 0.866 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.933 -8.171 6.607 27.057 hybrid contribution -1.376 1.763 -0.423 2.277 sum 23.557 -6.408 6.184 25.184 Atomic orbital electron populations 1.70078 1.08328 1.28117 1.52792 1.26043 0.95601 1.03584 0.94256 0.85657 0.79579 0.78355 0.79025 1.19582 1.21030 1.16786 1.21546 0.92302 0.93088 1.50099 0.94781 1.19534 0.93705 0.95410 0.96349 1.21327 0.93260 0.97167 1.01344 1.22260 0.96297 0.95942 1.03090 1.21407 0.90875 0.94791 0.96284 0.86356 1.58685 1.17121 1.57515 1.03414 1.20791 0.90610 0.74471 0.82994 1.90643 1.65633 1.50148 1.38530 1.45982 1.07540 1.73553 1.09614 1.20999 0.80109 0.96063 0.99147 1.22536 0.97688 0.97053 1.02679 1.22608 0.93207 0.97103 0.88342 1.87927 1.81168 1.22040 1.40541 1.22708 0.92603 0.82683 1.03684 1.22469 0.98094 1.01681 0.97204 0.92552 0.95986 0.96996 0.92110 0.93013 0.92533 0.90078 0.82887 0.84086 0.74882 0.91257 0.90361 0.91955 0.92760 0.87357 0.92503 0.86563 0.89073 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.09 -3.20 4.92 30.60 0.15 -3.05 16 11 C -0.14 -3.64 4.84 30.59 0.15 -3.49 16 12 C 0.08 1.95 3.21 44.17 0.14 2.09 16 13 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 14 N -0.84 -21.56 8.94 -171.79 -1.54 -23.10 16 15 C 0.52 13.20 7.05 87.66 0.62 13.82 16 16 O -0.57 -18.65 15.91 -3.02 -0.05 -18.70 16 17 N -0.71 -13.06 5.08 -441.97 -2.25 -15.30 16 18 C 0.14 2.45 2.54 45.11 0.11 2.56 16 19 C -0.16 -2.72 5.72 30.69 0.18 -2.54 16 20 C 0.06 0.96 6.84 72.01 0.49 1.45 16 21 O -0.40 -6.55 10.77 -148.98 -1.60 -8.15 16 22 C 0.06 0.72 6.84 72.01 0.49 1.22 16 23 C -0.16 -1.88 5.61 30.68 0.17 -1.71 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 26 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.79 6.87 -2.39 -0.02 1.78 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.36 8.71 7.55 -89.70 -0.68 8.03 16 32 H 0.35 9.37 8.58 -89.70 -0.77 8.60 16 33 H 0.41 5.48 8.61 -92.71 -0.80 4.68 16 34 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.25 337.58 -1.19 -72.44 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -1.28 Total: 25.65 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.34 Total: -19.26 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -3.48 Total: -97.48 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.65 Total: -26.85 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -71.25 -1.19 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691591565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.864 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds