Wall clock time and date at job start Mon Mar 30 2020 04:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47423 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.47100 * 30.00004 * 3 2 1 6 6 H 1.48504 * 109.47356 * 149.99801 * 3 2 1 7 7 C 1.37882 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47197 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47328 * 55.00052 * 11 10 9 13 13 N 1.46905 * 109.46868 * 294.99704 * 11 10 9 14 14 C 1.50702 * 109.47200 * 175.00059 * 11 10 9 15 15 O 1.21274 * 120.00238 * 99.99754 * 14 11 10 16 16 N 1.34778 * 119.99821 * 279.99657 * 14 11 10 17 17 C 1.46924 * 120.63199 * 354.90125 * 16 14 11 18 18 C 1.53196 * 108.77468 * 233.58420 * 17 16 14 19 19 C 1.53041 * 109.31097 * 305.36259 * 18 17 16 20 20 C 1.53039 * 109.53634 * 61.36360 * 19 18 17 21 21 C 1.46924 * 120.62894 * 174.61283 * 16 14 11 22 22 H 1.08994 * 109.58862 * 246.20306 * 21 16 14 23 23 C 1.52996 * 109.58813 * 6.63306 * 21 16 14 24 24 O 1.42901 * 109.47532 * 65.51059 * 23 21 16 25 25 H 0.97003 * 120.00451 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46975 * 60.00128 * 9 7 2 27 27 H 1.08997 * 109.47476 * 300.00450 * 9 7 2 28 28 H 1.09006 * 109.46679 * 300.00020 * 10 9 7 29 29 H 1.08995 * 109.47008 * 60.00147 * 10 9 7 30 30 H 1.00895 * 111.00425 * 299.99885 * 13 11 10 31 31 H 1.00897 * 110.99886 * 63.96420 * 13 11 10 32 32 H 1.09003 * 109.58304 * 353.36437 * 17 16 14 33 33 H 1.08995 * 109.59045 * 113.65174 * 17 16 14 34 34 H 1.08998 * 109.49876 * 65.30840 * 18 17 16 35 35 H 1.08992 * 109.49981 * 185.40949 * 18 17 16 36 36 H 1.09003 * 109.46039 * 181.38539 * 19 18 17 37 37 H 1.09006 * 109.45939 * 301.34595 * 19 18 17 38 38 H 1.09001 * 109.50054 * 58.58821 * 20 19 18 39 39 H 1.09002 * 109.49764 * 178.68515 * 20 19 18 40 40 H 1.09001 * 109.47704 * 185.51420 * 23 21 16 41 41 H 1.09003 * 109.47326 * 305.50915 * 23 21 16 42 42 H 0.96700 * 114.00385 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7281 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4586 -1.3313 17 6 2.4832 -5.7871 -2.5488 18 6 2.0331 -6.8510 -3.5551 19 6 3.1757 -7.8420 -3.7888 20 6 3.5254 -8.5396 -2.4723 21 6 3.9964 -7.4909 -1.4531 22 1 4.9256 -7.0359 -1.7959 23 6 4.2190 -8.1574 -0.0941 24 8 3.0391 -8.8677 0.2871 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 -0.8906 29 1 2.8718 -3.6044 0.8894 30 1 1.3476 -5.1034 2.0500 31 1 0.0232 -4.4009 1.3300 32 1 1.6429 -5.1374 -2.3037 33 1 3.2908 -5.1939 -2.9776 34 1 1.1665 -7.3814 -3.1605 35 1 1.7688 -6.3716 -4.4975 36 1 2.8666 -8.5860 -4.5230 37 1 4.0501 -7.3072 -4.1599 38 1 2.6447 -9.0541 -2.0879 39 1 4.3233 -9.2620 -2.6441 40 1 5.0554 -8.8529 -0.1631 41 1 4.4412 -7.3950 0.6525 42 1 3.1084 -9.3159 1.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691625164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:34 Heat of formation + Delta-G solvation = -84.795531 kcal Electronic energy + Delta-G solvation = -22159.687054 eV Core-core repulsion = 18946.568975 eV Total energy + Delta-G solvation = -3213.118079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45321 -37.42419 -36.33101 -35.18334 -32.88368 -32.67587 -31.57095 -29.85161 -27.20084 -26.14450 -24.45231 -23.77684 -21.77910 -21.01803 -20.06813 -18.63083 -17.31089 -17.12406 -16.24601 -15.69674 -15.15810 -14.64864 -14.63526 -14.47004 -14.28435 -13.99678 -13.74301 -13.40858 -13.00231 -12.93324 -12.73139 -12.43138 -12.09098 -11.74547 -11.53695 -11.28839 -11.07221 -10.96465 -10.87669 -10.70459 -10.64784 -10.41603 -9.96325 -9.80502 -9.61558 -9.24220 -8.75262 -8.43525 -8.27092 -8.03827 -6.08047 -4.11128 3.06230 3.17464 3.26850 3.33791 3.37059 4.38716 4.42055 4.69945 4.74659 4.81054 4.98994 5.10236 5.24603 5.25111 5.28276 5.36792 5.42879 5.55417 5.57557 5.72921 5.78702 5.79214 5.85529 5.89064 5.98660 6.07421 6.09368 6.33166 6.37305 6.55414 6.76473 6.89839 7.48924 7.54329 7.63285 7.76099 7.89171 7.96365 7.96866 8.32183 8.63994 8.94836 9.53723 11.02849 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.004614 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.336503 B = 6066.905805 C = 6526.248047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.073 3.927 12 H 0.094 0.906 13 N -0.829 5.829 14 C 0.530 3.470 15 O -0.517 6.517 16 N -0.609 5.609 17 C 0.104 3.896 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.148 3.852 22 H 0.078 0.922 23 C 0.084 3.916 24 O -0.551 6.551 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.344 0.656 31 H 0.352 0.648 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -15.716 -5.802 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.176 4.176 11 C -0.042 4.042 12 H 0.111 0.889 13 N -0.361 5.361 14 C 0.319 3.681 15 O -0.393 6.393 16 N -0.345 5.345 17 C -0.019 4.019 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.165 4.165 21 C 0.045 3.955 22 H 0.096 0.904 23 C 0.006 3.994 24 O -0.355 6.355 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.344 -16.410 -6.105 18.623 hybrid contribution 1.070 1.801 0.501 2.154 sum 7.414 -14.609 -5.604 17.314 Atomic orbital electron populations 1.69946 1.06017 1.26759 1.50477 1.25003 0.94846 0.99254 0.95144 0.86597 0.79867 0.83430 0.78141 1.20613 1.21152 1.19915 1.21180 0.92983 0.90912 1.51057 0.92781 1.19095 0.93714 0.91131 0.97289 1.22368 0.99852 0.94076 1.01348 1.21536 0.94870 0.92549 0.95227 0.88851 1.58736 1.18397 1.55759 1.03178 1.20665 0.81192 0.84037 0.82256 1.90528 1.59115 1.52080 1.37550 1.47969 1.40572 1.39115 1.06801 1.21820 1.00425 0.94624 0.84985 1.21920 0.98762 0.97408 0.99255 1.21525 0.98548 0.98424 0.97200 1.21955 1.02375 0.97482 0.94646 1.21374 0.90505 0.88168 0.95481 0.90413 1.22301 0.86735 0.95164 0.95219 1.86466 1.37951 1.70187 1.40944 0.92889 0.96417 0.96447 0.92621 0.92860 0.84339 0.83315 0.88852 0.91343 0.91378 0.90739 0.91908 0.92007 0.90368 0.91608 0.95744 0.90539 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.61 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.73 4.68 -26.73 -0.13 -2.85 16 11 C 0.07 1.29 2.37 -68.86 -0.16 1.13 16 12 H 0.09 1.62 6.31 -51.93 -0.33 1.29 16 13 N -0.83 -14.78 8.94 -5.65 -0.05 -14.84 16 14 C 0.53 9.10 6.66 -10.98 -0.07 9.03 16 15 O -0.52 -9.62 10.60 -19.16 -0.20 -9.82 16 16 N -0.61 -8.75 2.96 -164.97 -0.49 -9.23 16 17 C 0.10 1.30 5.75 -3.71 -0.02 1.28 16 18 C -0.14 -1.41 6.08 -26.61 -0.16 -1.58 16 19 C -0.12 -1.13 5.88 -26.69 -0.16 -1.29 16 20 C -0.13 -1.37 5.26 -26.39 -0.14 -1.51 16 21 C 0.15 1.85 3.31 -67.38 -0.22 1.63 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.08 1.10 5.82 37.16 0.22 1.31 16 24 O -0.55 -7.97 10.31 -59.95 -0.62 -8.59 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 28 H 0.06 1.08 7.60 -51.93 -0.39 0.68 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.34 6.14 8.58 -39.29 -0.34 5.80 16 31 H 0.35 6.30 7.55 -39.29 -0.30 6.00 16 32 H 0.09 1.25 5.42 -51.93 -0.28 0.97 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.02 7.38 -51.93 -0.38 0.64 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 1.17 5.99 -52.06 -0.31 0.86 16 42 H 0.37 4.22 9.12 45.56 0.42 4.64 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -31.23 324.38 -8.19 -39.42 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.04 Total: 12.72 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.39 Total: -5.48 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.20 Total: -49.37 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.82 Total: -18.41 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.23 -8.19 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691625164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.377 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds