Wall clock time and date at job start Mon Mar 30 2020 04:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47423 * 270.00008 * 3 2 1 5 5 H 1.48500 * 109.47100 * 30.00004 * 3 2 1 6 6 H 1.48504 * 109.47356 * 149.99801 * 3 2 1 7 7 C 1.37882 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47197 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47328 * 55.00052 * 11 10 9 13 13 N 1.46905 * 109.46868 * 294.99704 * 11 10 9 14 14 C 1.50702 * 109.47200 * 175.00059 * 11 10 9 15 15 O 1.21274 * 120.00238 * 99.99754 * 14 11 10 16 16 N 1.34778 * 119.99821 * 279.99657 * 14 11 10 17 17 C 1.46924 * 120.63199 * 354.90125 * 16 14 11 18 18 C 1.53196 * 108.77468 * 233.58420 * 17 16 14 19 19 C 1.53041 * 109.31097 * 305.36259 * 18 17 16 20 20 C 1.53039 * 109.53634 * 61.36360 * 19 18 17 21 21 C 1.46924 * 120.62894 * 174.61283 * 16 14 11 22 22 H 1.08994 * 109.58862 * 246.20306 * 21 16 14 23 23 C 1.52996 * 109.58813 * 6.63306 * 21 16 14 24 24 O 1.42901 * 109.47532 * 65.51059 * 23 21 16 25 25 H 0.97003 * 120.00451 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46975 * 60.00128 * 9 7 2 27 27 H 1.08997 * 109.47476 * 300.00450 * 9 7 2 28 28 H 1.09006 * 109.46679 * 300.00020 * 10 9 7 29 29 H 1.08995 * 109.47008 * 60.00147 * 10 9 7 30 30 H 1.00895 * 111.00425 * 299.99885 * 13 11 10 31 31 H 1.00897 * 110.99886 * 63.96420 * 13 11 10 32 32 H 1.09003 * 109.58304 * 353.36437 * 17 16 14 33 33 H 1.08995 * 109.59045 * 113.65174 * 17 16 14 34 34 H 1.08998 * 109.49876 * 65.30840 * 18 17 16 35 35 H 1.08992 * 109.49981 * 185.40949 * 18 17 16 36 36 H 1.09003 * 109.46039 * 181.38539 * 19 18 17 37 37 H 1.09006 * 109.45939 * 301.34595 * 19 18 17 38 38 H 1.09001 * 109.50054 * 58.58821 * 20 19 18 39 39 H 1.09002 * 109.49764 * 178.68515 * 20 19 18 40 40 H 1.09001 * 109.47704 * 185.51420 * 23 21 16 41 41 H 1.09003 * 109.47326 * 305.50915 * 23 21 16 42 42 H 0.96700 * 114.00385 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7281 -5.1188 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4586 -1.3313 17 6 2.4832 -5.7871 -2.5488 18 6 2.0331 -6.8510 -3.5551 19 6 3.1757 -7.8420 -3.7888 20 6 3.5254 -8.5396 -2.4723 21 6 3.9964 -7.4909 -1.4531 22 1 4.9256 -7.0359 -1.7959 23 6 4.2190 -8.1574 -0.0941 24 8 3.0391 -8.8677 0.2871 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 -0.8906 29 1 2.8718 -3.6044 0.8894 30 1 1.3476 -5.1034 2.0500 31 1 0.0232 -4.4009 1.3300 32 1 1.6429 -5.1374 -2.3037 33 1 3.2908 -5.1939 -2.9776 34 1 1.1665 -7.3814 -3.1605 35 1 1.7688 -6.3716 -4.4975 36 1 2.8666 -8.5860 -4.5230 37 1 4.0501 -7.3072 -4.1599 38 1 2.6447 -9.0541 -2.0879 39 1 4.3233 -9.2620 -2.6441 40 1 5.0554 -8.8529 -0.1631 41 1 4.4412 -7.3950 0.6525 42 1 3.1084 -9.3159 1.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691625164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:34 Heat of formation + Delta-G solvation = -107.190008 kcal Electronic energy + Delta-G solvation = -22160.658152 eV Core-core repulsion = 18946.568975 eV Total energy + Delta-G solvation = -3214.089177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63454 -38.60474 -37.50475 -36.63151 -34.83724 -33.73016 -32.55970 -31.68093 -28.49578 -27.57092 -25.76713 -25.16172 -22.95494 -22.34119 -21.37712 -19.88804 -18.65941 -18.32687 -18.07206 -16.86262 -16.62743 -16.22588 -15.85958 -15.65463 -15.50213 -15.18900 -14.92101 -14.73331 -14.45011 -14.21530 -13.97319 -13.75999 -13.48088 -13.39866 -12.92319 -12.71367 -12.51341 -12.42877 -12.21365 -11.80466 -11.78988 -11.65406 -11.54883 -11.32909 -11.29479 -10.82325 -10.56335 -10.07248 -9.54270 -9.35057 -8.21247 -6.32016 1.39654 1.40467 1.51086 1.74762 2.02427 2.40100 3.12289 3.39482 3.66752 3.80570 3.83852 3.90586 4.00038 4.12188 4.17465 4.26674 4.33724 4.43772 4.52986 4.61380 4.68809 4.77499 4.85401 4.89134 4.95271 5.05947 5.09116 5.10153 5.22425 5.23117 5.45790 5.52429 5.64377 5.71293 5.79970 6.09342 6.20904 6.48252 6.50495 6.83116 7.02872 7.35133 7.37242 8.89581 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.004614 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.336503 B = 6066.905805 C = 6526.248047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.116 4.116 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.828 5.828 14 C 0.523 3.477 15 O -0.536 6.536 16 N -0.605 5.605 17 C 0.097 3.903 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.118 4.118 21 C 0.138 3.862 22 H 0.098 0.902 23 C 0.084 3.916 24 O -0.570 6.570 25 H 0.264 0.736 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.343 0.657 31 H 0.349 0.651 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -16.073 -7.244 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.156 4.156 11 C -0.036 4.036 12 H 0.115 0.885 13 N -0.359 5.359 14 C 0.311 3.689 15 O -0.413 6.413 16 N -0.340 5.340 17 C -0.025 4.025 18 C -0.169 4.169 19 C -0.153 4.153 20 C -0.157 4.157 21 C 0.036 3.964 22 H 0.115 0.885 23 C 0.007 3.993 24 O -0.376 6.376 25 H 0.073 0.927 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.944 -16.786 -7.571 20.055 hybrid contribution 0.571 1.875 0.948 2.177 sum 8.515 -14.912 -6.623 18.404 Atomic orbital electron populations 1.70061 1.07543 1.27781 1.51309 1.25859 0.95697 1.02957 0.94671 0.85535 0.78609 0.78897 0.78544 1.19601 1.20817 1.19235 1.21597 0.93293 0.92383 1.50946 0.92746 1.18949 0.93973 0.92079 0.95530 1.22083 0.98696 0.93741 1.01097 1.21448 0.94961 0.91972 0.95221 0.88534 1.58748 1.18353 1.55493 1.03345 1.20483 0.81305 0.83958 0.83116 1.90537 1.59714 1.52674 1.38418 1.48025 1.40373 1.39214 1.06364 1.21994 1.00437 0.95309 0.84778 1.21897 0.98686 0.97038 0.99262 1.21527 0.98571 0.98462 0.96719 1.21884 1.01952 0.97205 0.94634 1.21689 0.90689 0.88216 0.95836 0.88451 1.22298 0.87121 0.95082 0.94837 1.86432 1.38993 1.70399 1.41747 0.92717 0.98173 0.98133 0.91899 0.93868 0.84388 0.83606 0.90294 0.89971 0.92877 0.88809 0.90367 0.90521 0.92841 0.89502 0.92956 0.93103 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 2 C 0.01 0.37 5.46 84.66 0.46 0.84 16 3 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.59 4.74 29.85 0.14 1.73 16 10 C -0.12 -4.68 4.68 30.59 0.14 -4.54 16 11 C 0.08 2.83 2.37 44.17 0.10 2.93 16 12 H 0.10 3.39 6.31 -2.39 -0.02 3.38 16 13 N -0.83 -30.17 8.94 -171.80 -1.54 -31.71 16 14 C 0.52 17.92 6.66 87.66 0.58 18.51 16 15 O -0.54 -20.03 10.60 20.63 0.22 -19.81 16 16 N -0.61 -16.74 2.96 -794.24 -2.35 -19.09 16 17 C 0.10 2.29 5.75 86.36 0.50 2.78 16 18 C -0.13 -2.47 6.08 30.67 0.19 -2.28 16 19 C -0.12 -1.82 5.88 30.62 0.18 -1.64 16 20 C -0.12 -2.28 5.26 30.82 0.16 -2.12 16 21 C 0.14 3.18 3.31 45.12 0.15 3.33 16 22 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 23 C 0.08 2.11 5.82 71.98 0.42 2.52 16 24 O -0.57 -16.16 10.31 -125.34 -1.29 -17.45 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.00 -0.01 8.14 -2.38 -0.02 -0.02 16 27 H 0.00 0.02 6.87 -2.39 -0.02 0.00 16 28 H 0.06 2.41 7.60 -2.38 -0.02 2.39 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.34 12.53 8.58 -89.70 -0.77 11.76 16 31 H 0.35 12.91 7.55 -89.70 -0.68 12.23 16 32 H 0.08 2.08 5.42 -2.39 -0.01 2.07 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.05 1.32 7.38 -2.39 -0.02 1.30 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 1.54 5.99 -4.46 -0.03 1.51 16 42 H 0.38 8.58 9.12 -74.06 -0.68 7.90 16 Total: -1.00 -66.59 324.38 -0.49 -67.08 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -1.10 Total: 37.66 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.26 Total: -7.74 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.60 Total: -105.08 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.07 Total: -37.26 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.59 -0.49 -67.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691625164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.115 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds