Wall clock time and date at job start Mon Mar 30 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.99277 * 2 1 4 4 O 1.43746 * 109.87932 * 238.91786 * 2 1 3 5 5 C 1.44377 * 106.97551 * 267.08675 * 4 2 1 6 6 C 1.54988 * 103.49112 * 319.93924 * 5 4 2 7 7 C 1.54102 * 109.88293 * 121.08739 * 2 1 3 8 8 H 1.08997 * 110.48552 * 236.20817 * 7 2 1 9 9 N 1.46499 * 110.48194 * 358.71715 * 7 2 1 10 10 C 1.34784 * 119.99893 * 205.00047 * 9 7 2 11 11 O 1.21283 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72962 * 10 9 7 13 13 H 1.08993 * 109.47295 * 319.99306 * 12 10 9 14 14 N 1.46906 * 109.46751 * 199.99784 * 12 10 9 15 15 C 1.52998 * 109.47417 * 80.00157 * 12 10 9 16 16 C 1.53003 * 109.47049 * 185.00070 * 15 12 10 17 17 C 1.50699 * 109.47042 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99906 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00030 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99541 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47397 * 89.99881 * 21 19 17 23 23 H 1.48502 * 109.46811 * 209.99775 * 21 19 17 24 24 H 1.48499 * 109.47428 * 329.99587 * 21 19 17 25 25 H 1.08998 * 109.47408 * 298.91301 * 1 2 3 26 26 H 1.09005 * 109.47398 * 58.91318 * 1 2 3 27 27 H 1.08995 * 109.47076 * 178.91287 * 1 2 3 28 28 H 1.08997 * 109.47729 * 181.08494 * 3 2 1 29 29 H 1.08997 * 109.46903 * 301.08963 * 3 2 1 30 30 H 1.09001 * 109.46847 * 61.08287 * 3 2 1 31 31 H 1.09002 * 110.61473 * 78.44318 * 5 4 2 32 32 H 1.09005 * 110.61834 * 201.43430 * 5 4 2 33 33 H 1.08998 * 110.90917 * 278.82504 * 6 5 4 34 34 H 1.09000 * 110.90596 * 155.21925 * 6 5 4 35 35 H 0.97005 * 120.00261 * 25.00259 * 9 7 2 36 36 H 1.00897 * 110.99745 * 299.99925 * 14 12 10 37 37 H 1.00904 * 110.99853 * 63.95527 * 14 12 10 38 38 H 1.09001 * 109.46553 * 304.99451 * 15 12 10 39 39 H 1.09003 * 109.47269 * 64.99632 * 15 12 10 40 40 H 1.09005 * 109.46876 * 299.99664 * 16 15 12 41 41 H 1.08991 * 109.47380 * 59.99207 * 16 15 12 42 42 H 0.97002 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 2.2281 -2.0713 -0.7648 6 6 2.8324 -1.9524 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.7178 -0.1071 1.8210 9 7 0.9381 -1.2118 2.0693 10 6 1.1203 -1.4240 3.3878 11 8 2.2079 -1.2308 3.8885 12 6 -0.0292 -1.8950 4.2410 13 1 -0.9409 -1.3799 3.9387 14 7 0.2551 -1.5999 5.6518 15 6 -0.2124 -3.4035 4.0625 16 6 -1.4545 -3.8607 4.8299 17 6 -1.6353 -5.3464 4.6535 18 1 -0.9345 -5.9082 4.0537 19 6 -2.6952 -5.9885 5.2579 20 7 -2.8533 -7.2850 5.1036 21 14 -3.9076 -5.0166 6.2948 22 1 -5.0154 -4.5291 5.4344 23 1 -4.4576 -5.8902 7.3623 24 1 -3.2136 -3.8579 6.9120 25 1 -0.3634 0.4968 0.8995 26 1 -0.3634 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 3.1428 1.4281 -0.0195 29 1 1.6786 1.9606 -0.8800 30 1 1.7103 1.9491 0.8996 31 1 1.2813 -2.6107 -0.7358 32 1 2.9295 -2.5612 -1.4403 33 1 3.9003 -1.7390 0.6097 34 1 2.6432 -2.8558 1.2372 35 1 0.0682 -1.3660 1.6689 36 1 1.0964 -2.0663 5.9563 37 1 0.3165 -0.6049 5.8078 38 1 -0.3350 -3.6317 3.0037 39 1 0.6646 -3.9241 4.4472 40 1 -1.3319 -3.6324 5.8887 41 1 -2.3314 -3.3401 4.4452 42 1 -3.5988 -7.7367 5.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691625253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:00 Heat of formation + Delta-G solvation = -92.301581 kcal Electronic energy + Delta-G solvation = -21630.623682 eV Core-core repulsion = 18417.180116 eV Total energy + Delta-G solvation = -3213.443566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87551 -39.22331 -35.45733 -34.84538 -32.89917 -32.78405 -30.98888 -30.51226 -27.89426 -27.05412 -25.64016 -23.54766 -21.98404 -20.51734 -20.19107 -19.88100 -17.58482 -17.05072 -16.65914 -16.17114 -15.60459 -15.27994 -15.20437 -14.51416 -14.20571 -14.04363 -13.77089 -13.59600 -13.25520 -12.70105 -12.64062 -12.58337 -12.40580 -12.34569 -11.92581 -11.67943 -11.45491 -11.40661 -11.07475 -11.01203 -10.89311 -10.42372 -9.97347 -9.94794 -9.80535 -9.60362 -9.16924 -9.13138 -8.53080 -8.43058 -6.01220 -3.99033 2.63068 3.08585 3.34470 3.42623 3.50361 3.52828 4.24756 4.36309 4.49896 4.56872 4.70082 4.77770 4.79763 4.94194 5.01611 5.24377 5.29231 5.32175 5.35991 5.36684 5.48371 5.49957 5.55275 5.63573 5.74589 5.77493 5.82604 5.91661 6.24126 6.30292 6.43442 6.67499 6.83602 7.20242 7.33137 7.44585 7.56721 7.63062 7.84525 8.18727 8.55843 9.03186 9.61759 11.12236 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.004234 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.120443 B = 6611.518200 C = 6952.503600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 C -0.141 4.141 4 O -0.365 6.365 5 C 0.045 3.955 6 C -0.166 4.166 7 C 0.119 3.881 8 H 0.103 0.897 9 N -0.724 5.724 10 C 0.484 3.516 11 O -0.550 6.550 12 C 0.075 3.925 13 H 0.098 0.902 14 N -0.810 5.810 15 C -0.087 4.087 16 C -0.004 4.004 17 C -0.522 4.522 18 H 0.068 0.932 19 C 0.066 3.934 20 N -0.906 5.906 21 Si 0.879 3.121 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.260 1.260 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.405 0.595 36 H 0.350 0.650 37 H 0.335 0.665 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 16.908 -10.634 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 C -0.199 4.199 4 O -0.285 6.285 5 C -0.032 4.032 6 C -0.205 4.205 7 C 0.013 3.987 8 H 0.121 0.879 9 N -0.380 5.380 10 C 0.270 3.730 11 O -0.427 6.427 12 C -0.041 4.041 13 H 0.116 0.884 14 N -0.338 5.338 15 C -0.125 4.125 16 C -0.042 4.042 17 C -0.560 4.560 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.545 5.545 21 Si 0.706 3.294 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.184 1.184 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.243 0.757 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.371 16.629 -10.248 21.252 hybrid contribution -0.229 0.504 0.063 0.558 sum 8.142 17.134 -10.185 21.531 Atomic orbital electron populations 1.22260 0.94681 1.02746 1.03236 1.22310 0.94134 0.93455 0.84841 1.21874 1.01895 0.93404 1.02712 1.88926 1.86035 1.20894 1.32607 1.23596 1.00255 0.83971 0.95350 1.23542 1.00725 0.99535 0.96723 1.22268 0.89136 0.95564 0.91766 0.87882 1.46486 1.13985 1.68741 1.08773 1.22696 0.91821 0.75837 0.82648 1.90654 1.27123 1.51744 1.73220 1.21868 0.94421 1.00447 0.87376 0.88449 1.59030 1.44566 1.14627 1.15608 1.21469 1.01655 0.88585 1.00834 1.19487 0.91606 0.96398 0.96686 1.21171 1.11660 0.91554 1.31613 0.91343 1.25013 0.97651 0.94723 0.96079 1.69923 1.31114 1.08633 1.44861 0.86776 0.81467 0.80594 0.80518 1.20507 1.21588 1.18414 0.90871 0.91112 0.91751 0.91639 0.91470 0.91143 0.91818 0.88677 0.89785 0.89370 0.75677 0.83583 0.85316 0.92301 0.92182 0.94751 0.97364 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 7.48 37.15 0.28 -1.17 16 2 C 0.09 0.88 1.19 -90.05 -0.11 0.78 16 3 C -0.14 -1.16 8.67 37.16 0.32 -0.84 16 4 O -0.37 -3.99 10.86 -35.23 -0.38 -4.37 16 5 C 0.04 0.43 7.66 38.21 0.29 0.73 16 6 C -0.17 -1.76 6.88 -24.73 -0.17 -1.93 16 7 C 0.12 1.28 3.01 -66.40 -0.20 1.08 16 8 H 0.10 1.23 7.11 -51.93 -0.37 0.86 16 9 N -0.72 -8.30 4.52 -52.33 -0.24 -8.54 16 10 C 0.48 6.94 7.07 -10.98 -0.08 6.87 16 11 O -0.55 -9.39 15.90 5.56 0.09 -9.30 16 12 C 0.07 1.13 3.15 -68.86 -0.22 0.91 16 13 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 14 N -0.81 -12.35 8.44 -5.65 -0.05 -12.40 16 15 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 16 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 17 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 18 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -27.99 13.96 55.43 0.77 -27.21 16 21 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 25 H 0.07 0.56 7.68 -51.93 -0.40 0.17 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.54 6.99 -51.93 -0.36 0.18 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 35 H 0.40 4.07 5.86 -40.82 -0.24 3.83 16 36 H 0.35 5.49 8.58 -39.29 -0.34 5.15 16 37 H 0.34 4.37 9.06 -39.29 -0.36 4.01 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -32.68 336.26 -6.99 -39.67 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.04 Total: 8.77 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.55 Total: -8.77 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.49 Total: -48.15 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.29 Total: -13.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.68 -6.99 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691625253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.629 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds