Wall clock time and date at job start Mon Mar 30 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.99277 * 2 1 4 4 O 1.43746 * 109.87932 * 238.91786 * 2 1 3 5 5 C 1.44377 * 106.97551 * 267.08675 * 4 2 1 6 6 C 1.54988 * 103.49112 * 319.93924 * 5 4 2 7 7 C 1.54102 * 109.88293 * 121.08739 * 2 1 3 8 8 H 1.08997 * 110.48552 * 236.20817 * 7 2 1 9 9 N 1.46499 * 110.48194 * 358.71715 * 7 2 1 10 10 C 1.34784 * 119.99893 * 205.00047 * 9 7 2 11 11 O 1.21283 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72962 * 10 9 7 13 13 H 1.08993 * 109.47295 * 319.99306 * 12 10 9 14 14 N 1.46906 * 109.46751 * 199.99784 * 12 10 9 15 15 C 1.52998 * 109.47417 * 80.00157 * 12 10 9 16 16 C 1.53003 * 109.47049 * 185.00070 * 15 12 10 17 17 C 1.50699 * 109.47042 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99906 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00030 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99541 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47397 * 89.99881 * 21 19 17 23 23 H 1.48502 * 109.46811 * 209.99775 * 21 19 17 24 24 H 1.48499 * 109.47428 * 329.99587 * 21 19 17 25 25 H 1.08998 * 109.47408 * 298.91301 * 1 2 3 26 26 H 1.09005 * 109.47398 * 58.91318 * 1 2 3 27 27 H 1.08995 * 109.47076 * 178.91287 * 1 2 3 28 28 H 1.08997 * 109.47729 * 181.08494 * 3 2 1 29 29 H 1.08997 * 109.46903 * 301.08963 * 3 2 1 30 30 H 1.09001 * 109.46847 * 61.08287 * 3 2 1 31 31 H 1.09002 * 110.61473 * 78.44318 * 5 4 2 32 32 H 1.09005 * 110.61834 * 201.43430 * 5 4 2 33 33 H 1.08998 * 110.90917 * 278.82504 * 6 5 4 34 34 H 1.09000 * 110.90596 * 155.21925 * 6 5 4 35 35 H 0.97005 * 120.00261 * 25.00259 * 9 7 2 36 36 H 1.00897 * 110.99745 * 299.99925 * 14 12 10 37 37 H 1.00904 * 110.99853 * 63.95527 * 14 12 10 38 38 H 1.09001 * 109.46553 * 304.99451 * 15 12 10 39 39 H 1.09003 * 109.47269 * 64.99632 * 15 12 10 40 40 H 1.09005 * 109.46876 * 299.99664 * 16 15 12 41 41 H 1.08991 * 109.47380 * 59.99207 * 16 15 12 42 42 H 0.97002 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 2.2281 -2.0713 -0.7648 6 6 2.8324 -1.9524 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.7178 -0.1071 1.8210 9 7 0.9381 -1.2118 2.0693 10 6 1.1203 -1.4240 3.3878 11 8 2.2079 -1.2308 3.8885 12 6 -0.0292 -1.8950 4.2410 13 1 -0.9409 -1.3799 3.9387 14 7 0.2551 -1.5999 5.6518 15 6 -0.2124 -3.4035 4.0625 16 6 -1.4545 -3.8607 4.8299 17 6 -1.6353 -5.3464 4.6535 18 1 -0.9345 -5.9082 4.0537 19 6 -2.6952 -5.9885 5.2579 20 7 -2.8533 -7.2850 5.1036 21 14 -3.9076 -5.0166 6.2948 22 1 -5.0154 -4.5291 5.4344 23 1 -4.4576 -5.8902 7.3623 24 1 -3.2136 -3.8579 6.9120 25 1 -0.3634 0.4968 0.8995 26 1 -0.3634 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 3.1428 1.4281 -0.0195 29 1 1.6786 1.9606 -0.8800 30 1 1.7103 1.9491 0.8996 31 1 1.2813 -2.6107 -0.7358 32 1 2.9295 -2.5612 -1.4403 33 1 3.9003 -1.7390 0.6097 34 1 2.6432 -2.8558 1.2372 35 1 0.0682 -1.3660 1.6689 36 1 1.0964 -2.0663 5.9563 37 1 0.3165 -0.6049 5.8078 38 1 -0.3350 -3.6317 3.0037 39 1 0.6646 -3.9241 4.4472 40 1 -1.3319 -3.6324 5.8887 41 1 -2.3314 -3.3401 4.4452 42 1 -3.5988 -7.7367 5.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691625253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:00 Heat of formation + Delta-G solvation = -117.235022 kcal Electronic energy + Delta-G solvation = -21631.704877 eV Core-core repulsion = 18417.180116 eV Total energy + Delta-G solvation = -3214.524761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.80412 -40.27630 -36.88029 -35.85350 -34.77971 -33.65096 -32.28228 -31.89974 -28.62509 -28.45389 -26.72489 -24.98003 -22.95516 -22.09053 -21.12033 -21.01683 -19.03701 -18.36102 -18.05726 -17.03559 -16.84137 -16.45177 -16.09303 -16.00491 -15.59093 -15.14326 -14.98956 -14.69903 -14.46491 -14.17263 -13.95559 -13.52238 -13.38000 -13.27675 -13.05796 -12.80328 -12.68508 -12.54520 -12.24288 -12.19049 -11.98386 -11.80034 -11.73991 -11.59779 -11.29943 -11.11794 -10.73539 -10.70216 -10.17005 -9.66914 -8.24363 -6.27651 1.40579 1.44334 1.47363 1.58123 2.07921 2.42362 2.75978 3.12500 3.44960 3.54681 3.58269 3.80590 3.82533 3.98609 4.06605 4.08930 4.18632 4.26632 4.54464 4.56995 4.68862 4.70603 4.76910 4.79139 4.83829 4.85847 4.91861 4.95479 5.14223 5.19037 5.25501 5.35074 5.50273 5.66074 5.74549 5.89415 6.06389 6.32905 6.39638 6.52328 6.81148 7.10336 7.37102 8.92512 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.004234 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.120443 B = 6611.518200 C = 6952.503600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 C -0.141 4.141 4 O -0.378 6.378 5 C 0.046 3.954 6 C -0.167 4.167 7 C 0.117 3.883 8 H 0.093 0.907 9 N -0.709 5.709 10 C 0.489 3.511 11 O -0.578 6.578 12 C 0.084 3.916 13 H 0.122 0.878 14 N -0.818 5.818 15 C -0.079 4.079 16 C 0.002 3.998 17 C -0.531 4.531 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.951 3.049 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.244 1.244 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.346 0.654 37 H 0.349 0.651 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.029 0.971 41 H 0.023 0.977 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.472 19.296 -10.880 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.053 3.947 3 C -0.198 4.198 4 O -0.297 6.297 5 C -0.030 4.030 6 C -0.206 4.206 7 C 0.011 3.989 8 H 0.112 0.888 9 N -0.365 5.365 10 C 0.275 3.725 11 O -0.458 6.458 12 C -0.032 4.032 13 H 0.139 0.861 14 N -0.347 5.347 15 C -0.118 4.118 16 C -0.036 4.036 17 C -0.569 4.569 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.597 5.597 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.167 1.167 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.254 0.746 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.459 19.046 -10.532 23.006 hybrid contribution 0.130 -0.305 0.070 0.339 sum 7.589 18.740 -10.462 22.765 Atomic orbital electron populations 1.22277 0.93667 1.02951 1.04078 1.22397 0.94926 0.93739 0.83618 1.21891 1.01824 0.92607 1.03491 1.88919 1.86239 1.21340 1.33222 1.23644 1.00626 0.83766 0.94947 1.23521 1.01185 0.98699 0.97183 1.22331 0.88790 0.95681 0.92075 0.88847 1.46370 1.14695 1.67477 1.07909 1.22444 0.90976 0.75776 0.83346 1.90650 1.27990 1.53253 1.73916 1.21685 0.95833 0.97818 0.87848 0.86065 1.59020 1.44396 1.15784 1.15541 1.21258 0.98818 0.91250 1.00425 1.19375 0.94074 0.93038 0.97065 1.21566 1.10602 0.94221 1.30544 0.95392 1.26009 0.99991 0.95706 0.97626 1.70083 1.32289 1.10745 1.46546 0.85634 0.78967 0.79254 0.78656 1.18897 1.21643 1.16733 0.89911 0.90443 0.91840 0.91848 0.90728 0.90308 0.91680 0.87283 0.89305 0.90949 0.74595 0.84082 0.83733 0.91645 0.94170 0.95239 0.95876 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 7.48 71.98 0.54 -1.94 16 2 C 0.09 1.60 1.19 -10.42 -0.01 1.58 16 3 C -0.14 -2.03 8.67 71.98 0.62 -1.40 16 4 O -0.38 -7.59 10.86 -148.98 -1.62 -9.21 16 5 C 0.05 0.84 7.66 72.66 0.56 1.39 16 6 C -0.17 -3.41 6.88 31.89 0.22 -3.19 16 7 C 0.12 2.38 3.01 45.98 0.14 2.51 16 8 H 0.09 2.13 7.11 -2.39 -0.02 2.11 16 9 N -0.71 -15.01 4.52 -437.85 -1.98 -16.99 16 10 C 0.49 13.27 7.07 87.65 0.62 13.89 16 11 O -0.58 -19.20 15.90 -3.04 -0.05 -19.25 16 12 C 0.08 2.36 3.15 44.17 0.14 2.50 16 13 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 14 N -0.82 -23.38 8.44 -171.80 -1.45 -24.83 16 15 C -0.08 -2.90 4.78 30.59 0.15 -2.75 16 16 C 0.00 0.09 3.93 29.85 0.12 0.21 16 17 C -0.53 -30.34 9.66 25.60 0.25 -30.10 16 18 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.96 -60.20 13.96 21.45 0.30 -59.90 16 21 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 25 H 0.08 1.03 7.68 -2.39 -0.02 1.01 16 26 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 0.92 6.99 -2.39 -0.02 0.90 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 32 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 35 H 0.41 7.34 5.86 -92.70 -0.54 6.80 16 36 H 0.35 10.50 8.58 -89.70 -0.77 9.73 16 37 H 0.35 8.28 9.06 -89.69 -0.81 7.47 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.36 6.81 -2.38 -0.02 1.35 16 41 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -70.51 336.26 -0.27 -70.77 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.16 Total: 29.99 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.80 Total: -16.65 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -3.13 Total: -101.73 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.67 Total: -28.47 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -70.51 -0.27 -70.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691625253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.460 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds