Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 H 1.09000 * 109.47216 * 304.99895 * 3 2 1 5 5 C 1.50703 * 109.47161 * 185.00493 * 3 2 1 6 6 H 1.08007 * 119.99514 * 240.00098 * 5 3 2 7 7 C 1.37870 * 120.00259 * 59.99634 * 5 3 2 8 8 N 1.31515 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47371 * 60.00384 * 9 7 5 11 11 H 1.48509 * 109.47337 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47437 * 300.00305 * 9 7 5 13 13 N 1.46494 * 109.47047 * 65.00335 * 3 2 1 14 14 C 1.34787 * 119.99764 * 274.99776 * 13 3 2 15 15 O 1.21282 * 119.99746 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99723 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.87890 * 275.42284 * 16 14 13 18 18 O 1.42902 * 109.46936 * 64.58047 * 17 16 14 19 19 C 1.42903 * 113.99731 * 180.02562 * 18 17 16 20 20 C 1.54311 * 109.88580 * 154.22958 * 16 14 13 21 21 C 1.55141 * 103.01761 * 262.87349 * 20 16 14 22 22 C 1.54906 * 101.65274 * 324.34936 * 21 20 16 23 23 N 1.47440 * 109.88892 * 36.45371 * 16 14 13 24 24 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99655 * 1 2 3 26 26 H 1.09006 * 109.47555 * 59.99947 * 1 2 3 27 27 H 1.09009 * 109.47166 * 240.00158 * 2 1 3 28 28 H 1.08996 * 109.47603 * 120.00115 * 2 1 3 29 29 H 0.96998 * 120.00278 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00702 * 95.00089 * 13 3 2 31 31 H 1.09001 * 109.47627 * 184.57892 * 17 16 14 32 32 H 1.09003 * 109.47461 * 304.58348 * 17 16 14 33 33 H 1.09002 * 109.47229 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47225 * 299.99538 * 19 18 17 35 35 H 1.08995 * 109.47187 * 59.99877 * 19 18 17 36 36 H 1.09003 * 110.71164 * 21.25428 * 20 16 14 37 37 H 1.09002 * 110.70787 * 144.49800 * 20 16 14 38 38 H 1.09007 * 110.99330 * 82.44026 * 21 20 16 39 39 H 1.09004 * 110.99695 * 206.21707 * 21 20 16 40 40 H 1.08997 * 110.37274 * 278.23810 * 22 21 20 41 41 H 1.09004 * 110.37092 * 155.89866 * 22 21 20 42 42 H 1.00901 * 111.00072 * 242.65934 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1240 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8813 -1.3819 10 1 6.5975 0.1474 -0.2351 11 1 6.3977 0.2178 -2.6511 12 1 6.4994 2.2816 -1.3823 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0367 3.3386 2.6545 17 6 -0.5110 2.3016 3.6371 18 8 0.5274 1.3858 3.9909 19 6 0.1186 0.3702 4.9093 20 6 -1.0315 4.4164 2.3740 21 6 -0.1977 5.7222 2.2937 22 6 0.8934 5.4630 3.3622 23 7 1.2024 4.0219 3.2445 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8291 -0.0604 -2.9503 30 1 2.2719 2.1231 1.9978 31 1 -0.8720 2.8055 4.5336 32 1 -1.3321 1.7572 3.1706 33 1 0.9630 -0.2836 5.1277 34 1 -0.2296 0.8337 5.8323 35 1 -0.6893 -0.2141 4.4689 36 1 -1.5356 4.2222 1.4273 37 1 -1.7507 4.4681 3.1914 38 1 0.2449 5.8427 1.3049 39 1 -0.8038 6.5894 2.5561 40 1 0.5111 5.6890 4.3576 41 1 1.7808 6.0598 3.1510 42 1 1.4360 3.6276 4.1434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692234026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = -108.749401 kcal Electronic energy + Delta-G solvation = -22661.455751 eV Core-core repulsion = 19447.298954 eV Total energy + Delta-G solvation = -3214.156797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42004 -39.11041 -38.06677 -36.75045 -34.19639 -32.82148 -31.63394 -31.07538 -28.86168 -27.65558 -25.60984 -25.17078 -23.61187 -22.06391 -21.40620 -20.43949 -18.80460 -17.73566 -17.68580 -17.31123 -17.01439 -16.62435 -16.16111 -15.77828 -15.60851 -15.15877 -14.59359 -14.27922 -14.15320 -13.86968 -13.51448 -13.28869 -13.17687 -13.07114 -12.90323 -12.85649 -12.64059 -12.27030 -12.20242 -12.16888 -12.09724 -11.94867 -11.77172 -11.55387 -11.01774 -10.81208 -10.55651 -10.43530 -9.44008 -9.31649 -8.12618 -6.29337 1.43953 1.46760 1.54397 1.96002 2.40147 2.65294 2.82534 3.15715 3.23941 3.66947 3.85572 3.92149 4.12004 4.22730 4.37497 4.46832 4.50710 4.54647 4.55862 4.58655 4.60986 4.73444 4.81114 4.90500 4.93114 5.01301 5.09707 5.16296 5.25833 5.30605 5.47761 5.59845 5.73271 5.79096 5.86099 6.05672 6.18159 6.23352 6.50791 6.79358 7.21601 7.38012 7.77456 8.92560 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.006280 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.099874 B = 4457.341554 C = 4796.553889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.279 3.721 4 H -0.009 1.009 5 C -0.545 4.545 6 H 0.065 0.935 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.519 3.481 15 O -0.602 6.602 16 C 0.095 3.905 17 C 0.062 3.938 18 O -0.401 6.401 19 C 0.029 3.971 20 C -0.123 4.123 21 C -0.127 4.127 22 C 0.050 3.950 23 N -0.680 5.680 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 6.144 17.296 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.155 4.155 3 C 0.175 3.825 4 H 0.009 0.991 5 C -0.583 4.583 6 H 0.083 0.917 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.325 5.325 14 C 0.305 3.695 15 O -0.485 6.485 16 C 0.001 3.999 17 C -0.016 4.016 18 O -0.320 6.320 19 C -0.067 4.067 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.078 4.078 23 N -0.314 5.314 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.269 6.066 15.792 18.412 hybrid contribution 0.296 -0.368 0.324 0.573 sum -6.972 5.698 16.116 18.461 Atomic orbital electron populations 1.21629 0.96995 0.98856 1.00088 1.21726 0.93750 0.99229 1.00820 1.18306 0.93414 0.89091 0.81714 0.99096 1.21547 0.91683 1.38618 1.06496 0.91723 1.25765 1.03330 0.94414 0.94966 1.70048 1.37038 1.38566 1.09824 0.85444 0.79177 0.78400 0.77575 1.18969 1.20897 1.19798 1.46022 1.15463 1.54335 1.16665 1.20758 0.81680 0.77938 0.89165 1.90604 1.52892 1.62898 1.42126 1.21731 0.91981 0.94410 0.91803 1.22917 0.90320 0.90917 0.97483 1.87926 1.36074 1.42656 1.65373 1.22899 1.01372 0.90404 0.92025 1.22741 0.96730 0.92920 1.03814 1.22710 0.97140 0.97671 0.98992 1.22925 0.98445 0.87772 0.98652 1.61529 1.35112 1.03828 1.30976 0.93713 0.93874 0.95723 0.91169 0.94579 0.92656 0.76295 0.88922 0.93313 0.88960 0.91719 0.94360 0.91238 0.87452 0.93634 0.87507 0.90656 0.90196 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 15.40 2.24 44.25 0.10 15.50 16 4 H -0.01 -0.58 7.58 -2.39 -0.02 -0.59 16 5 C -0.55 -30.96 8.73 25.60 0.22 -30.74 16 6 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -54.59 11.29 21.44 0.24 -54.35 16 9 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 N -0.68 -31.40 4.86 -446.08 -2.17 -33.57 16 14 C 0.52 22.17 5.08 87.66 0.45 22.62 16 15 O -0.60 -30.18 12.72 -3.03 -0.04 -30.22 16 16 C 0.10 2.83 0.92 3.12 0.00 2.83 16 17 C 0.06 1.50 4.63 71.98 0.33 1.83 16 18 O -0.40 -10.68 9.72 -148.98 -1.45 -12.13 16 19 C 0.03 0.55 11.01 113.37 1.25 1.80 16 20 C -0.12 -3.13 5.96 31.77 0.19 -2.94 16 21 C -0.13 -2.89 7.08 31.98 0.23 -2.66 16 22 C 0.05 1.02 7.57 86.77 0.66 1.68 16 23 N -0.68 -17.87 6.24 -464.90 -2.90 -20.77 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 2.00 5.64 -2.39 -0.01 1.99 16 26 H 0.02 1.25 7.85 -2.38 -0.02 1.23 16 27 H 0.07 4.08 5.95 -2.38 -0.01 4.07 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.40 17.46 7.97 -92.71 -0.74 16.72 16 31 H 0.09 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 2.21 6.77 -2.39 -0.02 2.20 16 37 H 0.11 1.90 7.80 -2.39 -0.02 1.88 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.36 8.06 7.72 -89.69 -0.69 7.37 16 Total: -1.00 -71.00 330.98 -0.05 -71.05 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.42 Total: 33.64 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.65 Total: 0.20 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.83 Total: -108.69 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.49 Total: -42.35 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -71.00 -0.05 -71.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692234026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.699 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds