Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 H 1.09000 * 110.56480 * 52.32578 * 3 2 1 5 5 C 1.54799 * 110.56015 * 289.48975 * 3 2 1 6 6 O 1.44426 * 104.80649 * 217.33581 * 5 3 2 7 7 C 1.44430 * 105.27331 * 40.58295 * 6 5 3 8 8 C 1.54476 * 104.80320 * 319.48747 * 7 6 5 9 9 H 1.08997 * 110.51645 * 265.19509 * 8 7 6 10 10 N 1.46504 * 110.51091 * 142.62325 * 8 7 6 11 11 C 1.34774 * 120.00115 * 88.30196 * 10 8 7 12 12 O 1.21287 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00490 * 180.02562 * 11 10 8 14 14 H 1.09006 * 109.46755 * 40.00812 * 13 11 10 15 15 N 1.46895 * 109.47178 * 160.00188 * 13 11 10 16 16 C 1.52997 * 109.47268 * 280.00484 * 13 11 10 17 17 C 1.53006 * 109.47127 * 174.99506 * 16 13 11 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46926 * 60.00512 * 22 20 18 24 24 H 1.48506 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47227 * 300.00303 * 22 20 18 26 26 H 1.09005 * 109.46743 * 299.99340 * 1 2 3 27 27 H 1.08992 * 109.47351 * 59.99370 * 1 2 3 28 28 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47254 * 240.00784 * 2 1 3 30 30 H 1.08994 * 109.47831 * 120.00449 * 2 1 3 31 31 H 1.08997 * 110.31016 * 98.52909 * 5 3 2 32 32 H 1.09002 * 110.43315 * 336.19541 * 5 3 2 33 33 H 1.09007 * 110.36888 * 200.66154 * 7 6 5 34 34 H 1.09000 * 110.46410 * 78.36763 * 7 6 5 35 35 H 0.97003 * 120.00216 * 268.30852 * 10 8 7 36 36 H 1.00903 * 111.00731 * 296.04932 * 15 13 11 37 37 H 1.00900 * 111.00349 * 60.00615 * 15 13 11 38 38 H 1.09001 * 109.46832 * 54.99827 * 16 13 11 39 39 H 1.08993 * 109.47194 * 294.99348 * 16 13 11 40 40 H 1.09001 * 109.46801 * 300.00272 * 17 16 13 41 41 H 1.09001 * 109.46998 * 59.99868 * 17 16 13 42 42 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 2.0114 0.8078 5 6 1.7653 2.1162 -1.3663 6 8 2.9216 2.9474 -1.6071 7 6 4.0526 2.1607 -1.1735 8 6 3.5797 1.4725 0.1261 9 1 3.8803 2.0540 0.9975 10 7 4.1143 0.1110 0.2098 11 6 5.3184 -0.1065 0.7749 12 8 5.9591 0.8248 1.2145 13 6 5.8687 -1.5068 0.8606 14 1 5.6455 -2.0419 -0.0625 15 7 7.3237 -1.4501 1.0540 16 6 5.2252 -2.2363 2.0415 17 6 5.6889 -3.6944 2.0542 18 6 5.0556 -4.4128 3.2177 19 1 4.3887 -3.8826 3.8815 20 6 5.3267 -5.7472 3.4342 21 7 6.1384 -6.3929 2.6256 22 14 4.5411 -6.6378 4.8760 23 1 3.0629 -6.5893 4.7419 24 1 4.9903 -8.0533 4.8877 25 1 4.9450 -5.9793 6.1442 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.8638 2.7265 -1.3128 32 1 1.6693 1.3638 -2.1492 33 1 4.9082 2.8053 -0.9718 34 1 4.3091 1.4151 -1.9261 35 1 3.6018 -0.6338 -0.1416 36 1 7.7785 -1.0302 0.2571 37 1 7.5567 -0.9585 1.9038 38 1 4.1402 -2.2010 1.9428 39 1 5.5214 -1.7528 2.9723 40 1 5.3927 -4.1779 1.1232 41 1 6.7739 -3.7297 2.1527 42 1 6.3294 -7.3316 2.7782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699812035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = -124.150948 kcal Electronic energy + Delta-G solvation = -21362.029048 eV Core-core repulsion = 18147.204390 eV Total energy + Delta-G solvation = -3214.824658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63986 -40.15455 -36.84052 -36.36259 -34.80148 -34.56019 -31.92306 -30.73339 -29.17466 -27.98459 -25.59585 -24.93299 -23.39329 -22.49439 -21.35755 -20.56817 -18.82090 -18.14957 -17.69630 -17.26133 -16.89802 -16.56003 -16.46622 -16.21675 -15.67588 -15.28749 -14.94218 -14.84375 -14.28425 -14.15591 -13.92238 -13.72742 -13.42789 -13.20518 -12.97168 -12.77041 -12.52683 -12.40954 -12.26090 -12.03874 -11.76754 -11.66806 -11.60990 -11.50592 -11.25188 -10.99747 -10.91053 -10.47327 -10.18460 -9.63003 -8.12618 -6.22763 1.42440 1.45189 1.46648 1.53058 2.04928 2.45568 2.99630 3.20621 3.33706 3.57163 3.67125 3.74425 3.86811 4.03861 4.12504 4.13372 4.26383 4.32067 4.46244 4.48385 4.70342 4.75073 4.77671 4.80144 4.85185 4.94696 4.97992 5.18107 5.24078 5.27019 5.29889 5.40713 5.58228 5.73622 5.85821 5.99956 6.09471 6.31529 6.40323 6.52900 6.95886 7.09768 7.45396 8.98359 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.004227 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.951502 B = 6622.593606 C = 7617.050950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.120 4.120 4 H 0.098 0.902 5 C 0.048 3.952 6 O -0.390 6.390 7 C 0.040 3.960 8 C 0.112 3.888 9 H 0.082 0.918 10 N -0.707 5.707 11 C 0.490 3.510 12 O -0.579 6.579 13 C 0.086 3.914 14 H 0.111 0.889 15 N -0.819 5.819 16 C -0.081 4.081 17 C 0.039 3.961 18 C -0.544 4.544 19 H 0.056 0.944 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.347 0.653 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.041 0.959 40 H -0.005 1.005 41 H 0.005 0.995 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 15.329 -9.228 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.139 4.139 4 H 0.117 0.883 5 C -0.029 4.029 6 O -0.308 6.308 7 C -0.038 4.038 8 C 0.006 3.994 9 H 0.100 0.900 10 N -0.362 5.362 11 C 0.275 3.725 12 O -0.459 6.459 13 C -0.030 4.030 14 H 0.129 0.871 15 N -0.348 5.348 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.582 4.582 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.256 0.744 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.014 0.986 41 H 0.023 0.977 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.623 15.233 -9.021 20.646 hybrid contribution -0.272 -0.107 0.683 0.743 sum -10.895 15.126 -8.338 20.421 Atomic orbital electron populations 1.21752 0.93982 1.02437 1.02508 1.21583 0.97600 0.94269 1.02743 1.22864 0.92452 0.98751 0.99858 0.88336 1.23785 0.89638 0.94589 0.94860 1.89142 1.16446 1.40071 1.85179 1.23781 0.90142 0.95256 0.94641 1.22327 0.94467 0.83693 0.98956 0.90007 1.46255 1.19496 1.09713 1.60738 1.22449 0.81392 0.92856 0.75775 1.90646 1.60009 1.45997 1.49207 1.21650 0.89403 0.90081 1.01892 0.87081 1.58971 1.05698 1.61447 1.08667 1.21389 0.99082 0.96553 0.94952 1.18828 0.95933 0.90235 0.94816 1.21700 1.27833 0.95686 1.12952 0.92622 1.25874 0.95776 0.98679 0.99135 1.70096 1.37195 1.10317 1.39376 0.85621 0.79169 0.77313 0.79641 1.19025 1.21011 1.19713 0.92502 0.91395 0.92262 0.90518 0.91705 0.87099 0.90640 0.89490 0.91188 0.74440 0.83996 0.84136 0.91309 0.94000 0.98632 0.97674 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.79 71.98 0.71 -1.04 16 2 C -0.12 -1.72 3.98 30.59 0.12 -1.60 16 3 C -0.12 -1.82 3.13 -9.67 -0.03 -1.85 16 4 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.05 0.67 6.53 72.60 0.47 1.15 16 6 O -0.39 -8.12 11.65 -148.98 -1.74 -9.86 16 7 C 0.04 0.82 7.35 72.48 0.53 1.35 16 8 C 0.11 2.31 3.42 46.01 0.16 2.47 16 9 H 0.08 2.06 7.61 -2.39 -0.02 2.04 16 10 N -0.71 -15.59 4.52 -437.73 -1.98 -17.57 16 11 C 0.49 14.25 7.07 87.66 0.62 14.87 16 12 O -0.58 -20.27 15.93 -3.05 -0.05 -20.32 16 13 C 0.09 2.71 3.15 44.17 0.14 2.85 16 14 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 15 N -0.82 -26.98 8.44 -171.81 -1.45 -28.43 16 16 C -0.08 -3.16 4.78 30.60 0.15 -3.02 16 17 C 0.04 1.99 4.86 29.85 0.15 2.13 16 18 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 19 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 20 C 0.00 0.19 5.46 84.65 0.46 0.65 16 21 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 22 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.62 7.64 -2.39 -0.02 0.60 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.93 7.15 -2.38 -0.02 0.91 16 30 H 0.06 1.10 7.46 -2.39 -0.02 1.08 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 0.90 7.76 -2.39 -0.02 0.88 16 33 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.42 7.60 5.96 -92.71 -0.55 7.05 16 36 H 0.35 9.75 9.06 -89.69 -0.81 8.93 16 37 H 0.35 11.72 8.58 -89.69 -0.77 10.95 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -68.30 339.67 -0.30 -68.61 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -1.11 Total: 29.69 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.71 Total: -12.16 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -3.14 Total: -101.83 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.78 Total: -30.18 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.30 -0.30 -68.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699812035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.544 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds