Wall clock time and date at job start Mon Mar 30 2020 04:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48500 * 109.47348 * 270.00008 * 3 2 1 5 5 H 1.48504 * 109.47324 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47222 * 149.99977 * 3 2 1 7 7 C 1.37876 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00220 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99385 * 0.02562 * 11 10 9 13 13 C 1.50690 * 120.00391 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.44271 * 111.00122 * 68.02612 * 14 13 11 16 16 C 1.54066 * 111.97379 * 219.31416 * 15 14 13 17 17 C 1.54427 * 112.37278 * 318.84620 * 16 15 14 18 18 C 1.50460 * 112.96140 * 318.48563 * 17 16 15 19 19 C 1.54510 * 108.96139 * 92.01666 * 18 17 16 20 20 H 1.08993 * 109.06271 * 43.29798 * 19 18 17 21 21 C 1.53003 * 109.05695 * 162.22125 * 19 18 17 22 22 O 1.42896 * 109.46893 * 294.99289 * 21 19 18 23 23 C 1.45871 * 111.58445 * 282.75776 * 19 18 17 24 24 H 0.96999 * 119.99971 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46451 * 60.00568 * 9 7 2 26 26 H 1.08994 * 109.46993 * 300.00395 * 9 7 2 27 27 H 0.96998 * 120.00309 * 0.02562 * 10 9 7 28 28 H 1.08996 * 109.47476 * 60.00395 * 13 11 10 29 29 H 1.09006 * 109.47569 * 300.00176 * 13 11 10 30 30 H 1.08994 * 108.97639 * 339.95671 * 15 14 13 31 31 H 1.08998 * 108.97666 * 98.75760 * 15 14 13 32 32 H 1.09000 * 108.91933 * 79.64231 * 16 15 14 33 33 H 1.09001 * 108.91850 * 198.28511 * 16 15 14 34 34 H 1.09002 * 108.96327 * 197.47412 * 17 16 15 35 35 H 1.09007 * 108.65082 * 79.27419 * 17 16 15 36 36 H 1.09002 * 109.57372 * 332.13757 * 18 17 16 37 37 H 1.08998 * 109.57079 * 211.88898 * 18 17 16 38 38 H 1.09001 * 109.47428 * 54.99666 * 21 19 18 39 39 H 1.09003 * 109.46926 * 174.99776 * 21 19 18 40 40 H 0.96700 * 114.00151 * 179.97438 * 22 21 19 41 41 H 1.08999 * 108.79601 * 182.21268 * 23 19 18 42 42 H 1.09002 * 108.79185 * 300.43989 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 7 1.9984 -7.3010 0.0005 15 6 1.3039 -7.4970 -1.2488 16 6 -0.0885 -8.1233 -1.0423 17 6 -0.0785 -9.2396 0.0247 18 6 1.1246 -10.1374 -0.0763 19 6 2.2399 -9.5874 0.8406 20 1 1.8023 -9.2866 1.7924 21 6 3.2692 -10.6911 1.0926 22 8 2.6583 -11.7531 1.8281 23 6 2.9103 -8.4391 0.2407 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1566 -3.4355 -0.0002 28 1 3.3595 -5.9708 0.8906 29 1 3.3597 -5.9715 -0.8894 30 1 1.1892 -6.5336 -1.7455 31 1 1.8966 -8.1550 -1.8844 32 1 -0.7842 -7.3437 -0.7321 33 1 -0.4299 -8.5453 -1.9876 34 1 -0.9782 -9.8446 -0.0872 35 1 -0.0898 -8.7780 1.0122 36 1 1.4776 -10.1604 -1.1073 37 1 0.8556 -11.1452 0.2401 38 1 3.6338 -11.0725 0.1388 39 1 4.1037 -10.2859 1.6649 40 1 3.2538 -12.4894 2.0237 41 1 3.7109 -8.1135 0.9047 42 1 3.3479 -8.7451 -0.7096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711332828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:08 Heat of formation + Delta-G solvation = -119.312998 kcal Electronic energy + Delta-G solvation = -21258.824796 eV Core-core repulsion = 18044.209928 eV Total energy + Delta-G solvation = -3214.614869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09387 -39.78216 -37.60859 -36.09291 -35.15187 -34.31905 -33.75397 -30.35814 -28.74098 -27.45025 -25.94385 -24.82734 -23.66058 -21.42126 -21.20986 -20.55352 -18.90309 -18.23310 -17.41445 -17.34698 -16.83532 -16.68916 -16.09446 -15.90012 -15.67717 -15.31520 -14.86533 -14.48626 -14.44905 -14.15282 -13.98926 -13.68912 -13.63991 -13.15343 -12.98297 -12.90604 -12.69576 -12.26640 -12.22541 -12.06529 -11.73857 -11.48250 -11.40755 -11.28078 -11.13298 -10.79587 -10.72604 -10.62243 -9.77032 -9.22954 -8.28999 -6.45784 1.42748 1.45398 1.56644 1.85876 2.26756 2.44901 3.00220 3.05798 3.62482 3.70871 3.92315 4.07123 4.08454 4.23358 4.30504 4.33795 4.35121 4.41321 4.53651 4.62662 4.68363 4.71654 4.80058 4.89653 4.95420 5.08411 5.12796 5.25452 5.30468 5.36385 5.39443 5.50240 5.53358 5.55762 5.72601 5.86160 6.06953 6.22740 6.66191 6.99618 7.01023 7.24268 7.58580 8.83290 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040006 B = 0.003342 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.720435 B = 8377.283974 C = 8796.554095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.712 5.712 11 C 0.490 3.510 12 O -0.582 6.582 13 C 0.051 3.949 14 N -0.533 5.533 15 C 0.070 3.930 16 C -0.104 4.104 17 C -0.102 4.102 18 C -0.097 4.097 19 C -0.085 4.085 20 H 0.058 0.942 21 C 0.086 3.914 22 O -0.593 6.593 23 C 0.064 3.936 24 H 0.268 0.732 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.408 0.592 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 -21.699 -0.897 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.363 5.363 11 C 0.277 3.723 12 O -0.462 6.462 13 C -0.079 4.079 14 N -0.258 5.258 15 C -0.059 4.059 16 C -0.143 4.143 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.104 4.104 20 H 0.076 0.924 21 C 0.008 3.992 22 O -0.402 6.402 23 C -0.063 4.063 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.243 0.757 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.570 -21.319 -0.553 23.802 hybrid contribution 0.842 0.982 -0.498 1.387 sum 11.412 -20.337 -1.052 23.344 Atomic orbital electron populations 1.70152 1.08351 1.28526 1.50098 1.26100 0.95772 1.04015 0.93900 0.85144 0.78513 0.76883 0.78596 1.19580 1.21066 1.17767 1.21638 0.94332 0.90582 1.52706 0.89713 1.18456 0.88677 0.84450 0.93714 1.46179 1.11061 1.05513 1.73533 1.21434 0.90168 0.84785 0.75913 1.90650 1.19192 1.85241 1.51099 1.22020 0.93707 0.86942 1.05257 1.61005 1.28197 1.00947 1.35611 1.21763 0.95496 0.99025 0.89611 1.21853 0.96483 0.97081 0.98868 1.21125 0.98467 0.95846 0.98591 1.21257 0.94546 0.98328 0.99347 1.20115 0.96671 0.94116 0.99518 0.92353 1.22147 0.93918 0.87457 0.95662 1.86448 1.43525 1.32882 1.77315 1.20961 0.93998 0.89919 1.01417 0.92305 0.99827 0.99914 0.75685 0.85422 0.89341 0.94427 0.92350 0.95041 0.91392 0.92647 0.94130 0.91439 0.91440 0.92005 0.92211 0.75382 0.89373 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.99 42.52 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.55 -30.39 9.28 25.60 0.24 -30.15 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 15.06 5.43 85.64 0.46 15.52 16 10 N -0.71 -30.09 5.55 -466.80 -2.59 -32.68 16 11 C 0.49 19.68 7.20 87.65 0.63 20.31 16 12 O -0.58 -29.32 15.06 -3.04 -0.05 -29.37 16 13 C 0.05 1.34 5.26 85.55 0.45 1.79 16 14 N -0.53 -14.29 3.95 -916.40 -3.62 -17.91 16 15 C 0.07 1.95 4.26 87.15 0.37 2.32 16 16 C -0.10 -3.05 6.14 31.44 0.19 -2.86 16 17 C -0.10 -2.67 5.44 30.26 0.16 -2.51 16 18 C -0.10 -2.00 4.92 30.29 0.15 -1.85 16 19 C -0.09 -1.63 2.16 -12.46 -0.03 -1.66 16 20 H 0.06 1.45 7.59 -2.39 -0.02 1.44 16 21 C 0.09 1.14 6.35 71.98 0.46 1.60 16 22 O -0.59 -9.13 12.96 -148.98 -1.93 -11.06 16 23 C 0.06 1.15 4.14 83.94 0.35 1.50 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 27 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 28 H 0.13 2.62 7.78 -2.39 -0.02 2.61 16 29 H 0.09 1.82 8.09 -2.38 -0.02 1.81 16 30 H 0.04 1.27 6.38 -2.39 -0.02 1.25 16 31 H 0.06 1.28 6.50 -2.39 -0.02 1.27 16 32 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.26 7.39 -2.38 -0.02 1.24 16 36 H 0.07 1.23 7.15 -2.39 -0.02 1.21 16 37 H 0.07 1.39 7.45 -2.39 -0.02 1.37 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.62 8.06 -2.39 -0.02 0.60 16 40 H 0.40 2.23 9.12 -74.06 -0.68 1.56 16 41 H 0.09 1.27 7.49 -2.39 -0.02 1.25 16 42 H 0.06 0.85 7.24 -2.39 -0.02 0.83 16 Total: -1.00 -76.94 330.99 -2.40 -79.34 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.43 Total: 19.37 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 3.90 Total: 4.56 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -5.92 Total: -107.39 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.98 Total: -40.43 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -76.94 -2.40 -79.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711332828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.972 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds