Wall clock time and date at job start Mon Mar 30 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.52137 * 2 1 4 4 C 1.53182 * 109.51752 * 120.11947 * 2 1 3 5 5 C 1.53175 * 109.03652 * 62.92880 * 4 2 1 6 6 C 1.53090 * 109.16547 * 56.97748 * 5 4 2 7 7 H 1.09002 * 109.48277 * 62.38454 * 6 5 4 8 8 C 1.52997 * 109.47946 * 182.40960 * 6 5 4 9 9 N 1.46904 * 109.46950 * 185.00196 * 8 6 5 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47107 * 179.97438 * 10 9 8 12 12 O 1.21286 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.37091 * 120.00108 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99712 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00268 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47452 * 60.00137 * 18 16 14 20 20 H 1.48505 * 109.46988 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47061 * 299.99710 * 18 16 14 22 22 O 1.42901 * 109.41356 * 302.39262 * 6 5 4 23 23 C 1.42905 * 114.09771 * 61.15704 * 22 6 5 24 24 H 1.09005 * 109.47254 * 299.88216 * 1 2 3 25 25 H 1.09003 * 109.47103 * 59.88110 * 1 2 3 26 26 H 1.09002 * 109.47251 * 179.87965 * 1 2 3 27 27 H 1.09001 * 109.47156 * 180.12517 * 3 2 1 28 28 H 1.09003 * 109.47085 * 300.11660 * 3 2 1 29 29 H 1.08994 * 109.47770 * 60.12176 * 3 2 1 30 30 H 1.08999 * 109.54430 * 303.05670 * 4 2 1 31 31 H 1.09003 * 109.54223 * 182.79270 * 4 2 1 32 32 H 1.08999 * 109.52148 * 297.06943 * 5 4 2 33 33 H 1.09006 * 109.57517 * 176.91456 * 5 4 2 34 34 H 1.08995 * 109.47319 * 65.00125 * 8 6 5 35 35 H 1.09003 * 109.47435 * 304.99450 * 8 6 5 36 36 H 1.00902 * 111.00190 * 56.03777 * 9 8 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 39 39 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 40 40 H 0.96996 * 119.99832 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47675 * 178.85698 * 23 22 6 42 42 H 1.09002 * 109.49025 * 58.83046 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 6 2.0417 -0.7245 1.2489 5 6 1.5875 -2.1865 1.1996 6 6 2.0970 -2.8278 -0.0938 7 1 3.1869 -2.8199 -0.0987 8 6 1.5968 -4.2712 -0.1791 9 7 2.1823 -4.9235 -1.3580 10 6 1.7229 -6.3140 -1.4728 11 6 2.3425 -6.9488 -2.6911 12 8 3.0927 -6.3059 -3.3947 13 7 2.0624 -8.2306 -2.9993 14 6 2.6265 -8.8082 -4.1073 15 1 3.2950 -8.2361 -4.7333 16 6 2.3380 -10.1299 -4.4247 17 7 1.5241 -10.8260 -3.6632 18 14 3.1072 -10.9172 -5.9340 19 1 4.5863 -10.8939 -5.8050 20 1 2.6420 -12.3227 -6.0505 21 1 2.7040 -10.1607 -7.1467 22 8 1.6098 -2.0875 -1.2149 23 6 2.0416 -0.7257 -1.2470 24 1 -0.3634 0.5120 0.8911 25 1 -0.3633 0.5157 -0.8889 26 1 -0.3634 -1.0277 -0.0022 27 1 3.1312 1.4411 -0.0022 28 1 1.6766 1.9568 -0.8890 29 1 1.6802 1.9556 0.8910 30 1 1.6355 -0.2462 2.1401 31 1 3.1306 -0.6817 1.2747 32 1 0.4987 -2.2307 1.2238 33 1 1.9930 -2.7240 2.0569 34 1 0.5101 -4.2747 -0.2641 35 1 1.8927 -4.8120 0.7198 36 1 3.1900 -4.8759 -1.3344 37 1 2.0193 -6.8692 -0.5828 38 1 0.6371 -6.3314 -1.5670 39 1 1.4621 -8.7446 -2.4367 40 1 1.3224 -11.7484 -3.8850 41 1 1.6454 -0.2397 -2.1387 42 1 3.1308 -0.6899 -1.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711376405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:29 Heat of formation + Delta-G solvation = -100.211400 kcal Electronic energy + Delta-G solvation = -20868.430403 eV Core-core repulsion = 17654.643841 eV Total energy + Delta-G solvation = -3213.786562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06921 -38.19425 -36.03032 -34.75334 -33.78770 -32.43131 -31.15527 -28.69571 -27.51038 -26.34106 -25.49451 -24.06061 -22.55847 -21.49352 -19.26291 -18.91780 -17.82755 -16.62036 -16.13805 -15.72352 -15.19662 -15.10653 -14.63962 -14.49520 -14.26901 -14.11905 -13.67942 -13.26666 -13.02412 -12.77950 -12.62610 -12.42119 -12.14601 -12.03973 -11.77591 -11.57990 -11.45202 -11.39503 -11.13716 -10.99626 -10.95789 -10.56826 -10.40541 -10.22177 -10.15882 -9.44925 -9.31915 -8.37697 -7.94513 -7.88553 -6.36789 -3.77340 3.23833 3.28787 3.33629 3.79851 3.97663 4.11613 4.31440 4.44147 4.53395 4.61371 4.88312 4.97861 5.08655 5.16970 5.25417 5.30949 5.34584 5.39147 5.44658 5.46813 5.56306 5.60000 5.64435 5.67814 5.72963 5.77999 5.85365 5.88153 5.95766 6.03679 6.06434 6.10419 6.25631 6.33606 7.26239 7.38526 7.59799 7.77311 8.11803 8.67407 9.23184 9.60226 10.12392 10.81133 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048931 B = 0.002931 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.098590 B = 9550.878729 C = 9814.417886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.095 3.905 7 H 0.055 0.945 8 C 0.067 3.933 9 N -0.661 5.661 10 C 0.051 3.949 11 C 0.442 3.558 12 O -0.581 6.581 13 N -0.566 5.566 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.353 6.353 23 C 0.070 3.930 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.347 0.653 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 18.817 12.665 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.190 4.190 6 C 0.037 3.963 7 H 0.073 0.927 8 C -0.063 4.063 9 N -0.293 5.293 10 C -0.082 4.082 11 C 0.228 3.772 12 O -0.465 6.465 13 N -0.202 5.202 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.758 3.242 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 O -0.271 6.271 23 C -0.008 4.008 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.166 0.834 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.869 19.193 11.584 22.496 hybrid contribution 0.606 -1.072 0.602 1.371 sum -1.263 18.121 12.187 21.874 Atomic orbital electron populations 1.21813 0.93820 1.02586 1.01183 1.21230 0.96938 0.95690 0.96483 1.21791 1.00908 0.95070 1.01935 1.21638 1.00572 0.95076 0.97381 1.22240 1.02445 0.96112 0.98180 1.22066 0.97324 0.91204 0.85714 0.92713 1.21979 1.00931 0.91706 0.91664 1.59957 1.14232 1.15271 1.39835 1.21676 1.00890 0.88752 0.96854 1.19824 0.86284 0.82981 0.88121 1.90522 1.40065 1.62644 1.53297 1.41857 1.42808 1.09983 1.25600 1.19658 1.25210 0.94972 1.02966 0.88004 1.25254 0.97104 0.96439 0.99196 1.69605 1.35618 1.10474 1.38821 0.85920 0.79277 0.77742 0.81282 1.19952 1.21012 1.19885 1.88113 1.73259 1.21028 1.44667 1.22606 0.98211 0.82930 0.97008 0.93138 0.92740 0.91604 0.92647 0.92418 0.92526 0.91636 0.91931 0.90627 0.91075 0.90315 0.94275 0.83400 0.94076 0.89593 0.77477 0.91878 0.89092 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.07 37.16 0.30 -0.91 16 2 C -0.10 -0.90 0.77 -154.38 -0.12 -1.02 16 3 C -0.14 -1.00 8.49 37.16 0.32 -0.69 16 4 C -0.11 -0.91 4.81 -26.55 -0.13 -1.04 16 5 C -0.15 -1.40 5.05 -26.59 -0.13 -1.54 16 6 C 0.10 1.15 2.82 -26.69 -0.08 1.07 16 7 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.07 0.89 5.35 -3.82 -0.02 0.87 16 9 N -0.66 -11.55 6.07 -115.05 -0.70 -12.25 16 10 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 11 C 0.44 10.88 7.82 -10.98 -0.09 10.79 16 12 O -0.58 -16.44 15.78 5.55 0.09 -16.35 16 13 N -0.57 -14.78 5.29 -10.97 -0.06 -14.84 16 14 C -0.30 -8.54 9.68 -14.94 -0.14 -8.68 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 18 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 O -0.35 -4.96 9.77 -35.23 -0.34 -5.30 16 23 C 0.07 0.76 5.54 37.20 0.21 0.97 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.67 6.14 -51.93 -0.32 0.35 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.71 6.63 -51.93 -0.34 0.37 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.35 6.19 8.43 -39.29 -0.33 5.86 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -32.13 337.61 -7.41 -39.53 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.17 Total: 10.76 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.01 Total: 1.24 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.03 Total: -51.41 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.26 Total: -21.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.13 -7.41 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711376405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.678 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds