Wall clock time and date at job start Mon Mar 30 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.52137 * 2 1 4 4 C 1.53182 * 109.51752 * 120.11947 * 2 1 3 5 5 C 1.53175 * 109.03652 * 62.92880 * 4 2 1 6 6 C 1.53090 * 109.16547 * 56.97748 * 5 4 2 7 7 H 1.09002 * 109.48277 * 62.38454 * 6 5 4 8 8 C 1.52997 * 109.47946 * 182.40960 * 6 5 4 9 9 N 1.46904 * 109.46950 * 185.00196 * 8 6 5 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47107 * 179.97438 * 10 9 8 12 12 O 1.21286 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.37091 * 120.00108 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99712 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00268 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47452 * 60.00137 * 18 16 14 20 20 H 1.48505 * 109.46988 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47061 * 299.99710 * 18 16 14 22 22 O 1.42901 * 109.41356 * 302.39262 * 6 5 4 23 23 C 1.42905 * 114.09771 * 61.15704 * 22 6 5 24 24 H 1.09005 * 109.47254 * 299.88216 * 1 2 3 25 25 H 1.09003 * 109.47103 * 59.88110 * 1 2 3 26 26 H 1.09002 * 109.47251 * 179.87965 * 1 2 3 27 27 H 1.09001 * 109.47156 * 180.12517 * 3 2 1 28 28 H 1.09003 * 109.47085 * 300.11660 * 3 2 1 29 29 H 1.08994 * 109.47770 * 60.12176 * 3 2 1 30 30 H 1.08999 * 109.54430 * 303.05670 * 4 2 1 31 31 H 1.09003 * 109.54223 * 182.79270 * 4 2 1 32 32 H 1.08999 * 109.52148 * 297.06943 * 5 4 2 33 33 H 1.09006 * 109.57517 * 176.91456 * 5 4 2 34 34 H 1.08995 * 109.47319 * 65.00125 * 8 6 5 35 35 H 1.09003 * 109.47435 * 304.99450 * 8 6 5 36 36 H 1.00902 * 111.00190 * 56.03777 * 9 8 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 39 39 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 40 40 H 0.96996 * 119.99832 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47675 * 178.85698 * 23 22 6 42 42 H 1.09002 * 109.49025 * 58.83046 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 6 2.0417 -0.7245 1.2489 5 6 1.5875 -2.1865 1.1996 6 6 2.0970 -2.8278 -0.0938 7 1 3.1869 -2.8199 -0.0987 8 6 1.5968 -4.2712 -0.1791 9 7 2.1823 -4.9235 -1.3580 10 6 1.7229 -6.3140 -1.4728 11 6 2.3425 -6.9488 -2.6911 12 8 3.0927 -6.3059 -3.3947 13 7 2.0624 -8.2306 -2.9993 14 6 2.6265 -8.8082 -4.1073 15 1 3.2950 -8.2361 -4.7333 16 6 2.3380 -10.1299 -4.4247 17 7 1.5241 -10.8260 -3.6632 18 14 3.1072 -10.9172 -5.9340 19 1 4.5863 -10.8939 -5.8050 20 1 2.6420 -12.3227 -6.0505 21 1 2.7040 -10.1607 -7.1467 22 8 1.6098 -2.0875 -1.2149 23 6 2.0416 -0.7257 -1.2470 24 1 -0.3634 0.5120 0.8911 25 1 -0.3633 0.5157 -0.8889 26 1 -0.3634 -1.0277 -0.0022 27 1 3.1312 1.4411 -0.0022 28 1 1.6766 1.9568 -0.8890 29 1 1.6802 1.9556 0.8910 30 1 1.6355 -0.2462 2.1401 31 1 3.1306 -0.6817 1.2747 32 1 0.4987 -2.2307 1.2238 33 1 1.9930 -2.7240 2.0569 34 1 0.5101 -4.2747 -0.2641 35 1 1.8927 -4.8120 0.7198 36 1 3.1900 -4.8759 -1.3344 37 1 2.0193 -6.8692 -0.5828 38 1 0.6371 -6.3314 -1.5670 39 1 1.4621 -8.7446 -2.4367 40 1 1.3224 -11.7484 -3.8850 41 1 1.6454 -0.2397 -2.1387 42 1 3.1308 -0.6899 -1.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711376405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:29 Heat of formation + Delta-G solvation = -123.582951 kcal Electronic energy + Delta-G solvation = -20869.443869 eV Core-core repulsion = 17654.643841 eV Total energy + Delta-G solvation = -3214.800028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91211 -40.11097 -37.16023 -36.03892 -35.60926 -33.43877 -33.18104 -29.84844 -28.15841 -27.68558 -26.62704 -25.60412 -23.57807 -22.43868 -21.08945 -19.95175 -19.69888 -17.95166 -17.47044 -16.91706 -16.46055 -16.32977 -15.99609 -15.88832 -15.52648 -15.23202 -15.04640 -14.60057 -14.36042 -13.97724 -13.55305 -13.46866 -13.21222 -13.05969 -12.99836 -12.84063 -12.74709 -12.64695 -12.44120 -12.32472 -12.12156 -11.91072 -11.71646 -11.50734 -11.28940 -11.04695 -10.35711 -10.17534 -10.02119 -9.26513 -8.46716 -5.95721 1.39885 1.41396 1.52727 2.05047 2.29295 2.89588 2.92709 3.20321 3.51435 3.73154 3.84415 3.87130 4.04479 4.15042 4.23120 4.32821 4.43032 4.47739 4.55016 4.62727 4.65630 4.70061 4.72740 4.81267 4.82638 4.91457 4.98141 5.04924 5.06791 5.15583 5.24781 5.32835 5.40335 5.42376 5.55964 5.88559 6.10613 6.36378 6.51837 6.60333 7.12224 7.55759 8.11596 8.70641 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048931 B = 0.002931 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.098590 B = 9550.878729 C = 9814.417886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.144 4.144 6 C 0.094 3.906 7 H 0.050 0.950 8 C 0.068 3.932 9 N -0.681 5.681 10 C 0.066 3.934 11 C 0.437 3.563 12 O -0.624 6.624 13 N -0.573 5.573 14 C -0.336 4.336 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.273 1.273 22 O -0.385 6.385 23 C 0.064 3.936 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.341 0.659 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.088 0.912 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 19.191 14.031 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.145 4.145 5 C -0.182 4.182 6 C 0.035 3.965 7 H 0.068 0.932 8 C -0.060 4.060 9 N -0.314 5.314 10 C -0.066 4.066 11 C 0.225 3.775 12 O -0.510 6.510 13 N -0.210 5.210 14 C -0.466 4.466 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.561 5.561 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.198 1.198 22 O -0.304 6.304 23 C -0.013 4.013 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.181 19.569 12.986 23.587 hybrid contribution 0.683 -1.153 0.180 1.352 sum -1.498 18.417 13.166 22.688 Atomic orbital electron populations 1.21786 0.93881 1.01720 1.01777 1.21192 0.96818 0.96411 0.95538 1.21766 1.01072 0.93949 1.02590 1.21655 1.00802 0.94416 0.97651 1.22182 1.02372 0.96731 0.96963 1.22136 0.97080 0.90588 0.86648 0.93160 1.22087 1.00611 0.92384 0.90960 1.59952 1.14073 1.14630 1.42699 1.21533 1.01048 0.89453 0.94607 1.20896 0.85213 0.82249 0.89166 1.90487 1.41876 1.63482 1.55201 1.41924 1.43042 1.10733 1.25334 1.19639 1.26605 0.95925 1.04390 0.90417 1.26057 0.97127 0.96247 1.01834 1.69665 1.35734 1.10915 1.39836 0.84981 0.78475 0.77305 0.77520 1.19591 1.19318 1.19802 1.88055 1.73822 1.22558 1.45960 1.22744 0.98194 0.82050 0.98332 0.91687 0.93010 0.93150 0.92390 0.92308 0.91349 0.89998 0.91687 0.90686 0.89439 0.90395 0.91755 0.84005 0.91251 0.88100 0.76924 0.91234 0.89374 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.07 71.98 0.58 -1.61 16 2 C -0.10 -1.59 0.77 -52.10 -0.04 -1.63 16 3 C -0.14 -1.70 8.49 71.98 0.61 -1.09 16 4 C -0.11 -1.55 4.81 30.71 0.15 -1.40 16 5 C -0.14 -2.37 5.05 30.68 0.16 -2.22 16 6 C 0.09 2.16 2.82 30.62 0.09 2.25 16 7 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 8 C 0.07 1.71 5.35 86.30 0.46 2.17 16 9 N -0.68 -23.48 6.07 -517.92 -3.15 -26.63 16 10 C 0.07 2.39 6.17 85.56 0.53 2.92 16 11 C 0.44 21.79 7.82 87.66 0.69 22.48 16 12 O -0.62 -36.30 15.78 -3.05 -0.05 -36.35 16 13 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 14 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 15 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 17 N -0.92 -50.52 13.05 21.66 0.28 -50.24 16 18 Si 0.99 43.71 29.55 68.60 2.03 45.73 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 O -0.38 -10.81 9.77 -148.98 -1.46 -12.26 16 23 C 0.06 1.38 5.54 72.01 0.40 1.78 16 24 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.98 6.14 -2.39 -0.01 0.96 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.26 6.63 -2.39 -0.02 1.24 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.34 12.23 8.43 -89.69 -0.76 11.48 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.40 19.87 7.90 -92.70 -0.73 19.14 16 40 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.67 337.61 0.45 -69.22 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -0.48 Total: 37.94 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 4.90 Total: 4.60 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -4.49 Total: -108.88 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.50 Total: -48.61 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.67 0.45 -69.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711376405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.362 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds