Wall clock time and date at job start Mon Mar 30 2020 04:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.99988 * 2 1 4 4 O 1.42906 * 109.46815 * 58.90666 * 3 2 1 5 5 C 1.54331 * 109.78116 * 121.16727 * 2 1 3 6 6 C 1.55158 * 103.02161 * 97.49663 * 5 2 1 7 7 C 1.54910 * 101.57799 * 35.30517 * 6 5 2 8 8 N 1.47020 * 109.88064 * 238.91039 * 2 1 3 9 9 C 1.34774 * 125.65136 * 59.55534 * 8 2 1 10 10 O 1.21279 * 120.00258 * 359.72325 * 9 8 2 11 11 C 1.50699 * 119.99874 * 179.71696 * 9 8 2 12 12 H 1.08997 * 109.47516 * 319.99936 * 11 9 8 13 13 N 1.46904 * 109.47277 * 199.99972 * 11 9 8 14 14 C 1.53006 * 109.47053 * 80.00469 * 11 9 8 15 15 C 1.52997 * 109.47127 * 184.99965 * 14 11 9 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 11 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47011 * 90.00204 * 20 18 16 22 22 H 1.48498 * 109.47112 * 210.00472 * 20 18 16 23 23 H 1.48499 * 109.47134 * 330.00583 * 20 18 16 24 24 H 1.08993 * 109.47024 * 181.09558 * 1 2 3 25 25 H 1.09008 * 109.46937 * 301.09326 * 1 2 3 26 26 H 1.08997 * 109.47461 * 61.08966 * 1 2 3 27 27 H 1.08998 * 109.47084 * 178.90578 * 3 2 1 28 28 H 1.09006 * 109.47198 * 298.91114 * 3 2 1 29 29 H 0.96705 * 113.99461 * 180.02562 * 4 3 2 30 30 H 1.08998 * 110.84764 * 339.02524 * 5 2 1 31 31 H 1.09004 * 110.51684 * 215.80769 * 5 2 1 32 32 H 1.09004 * 110.99891 * 277.23287 * 6 5 2 33 33 H 1.09002 * 111.00515 * 153.38409 * 6 5 2 34 34 H 1.09008 * 110.36193 * 204.15205 * 7 6 5 35 35 H 1.09004 * 110.36486 * 81.83532 * 7 6 5 36 36 H 1.00896 * 111.00022 * 176.04745 * 13 11 9 37 37 H 1.00898 * 110.99974 * 300.00369 * 13 11 9 38 38 H 1.09001 * 109.47002 * 304.99539 * 14 11 9 39 39 H 1.08993 * 109.46955 * 64.99976 * 14 11 9 40 40 H 1.09001 * 109.47289 * 299.99953 * 15 14 11 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 14 11 42 42 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.5623 2.1233 1.1538 5 6 2.0523 -0.7516 1.2426 6 6 2.3562 -2.1697 0.6913 7 6 2.8612 -1.8464 -0.7370 8 7 2.0299 -0.7139 -1.1840 9 6 1.7752 -0.3843 -2.4657 10 8 1.0746 0.5729 -2.7180 11 6 2.3611 -1.2051 -3.5855 12 1 3.3846 -1.4838 -3.3348 13 7 2.3581 -0.4160 -4.8246 14 6 1.5224 -2.4693 -3.7841 15 6 2.1863 -3.3622 -4.8342 16 6 1.3606 -4.6076 -5.0293 17 1 0.4527 -4.7480 -4.4614 18 6 1.7635 -5.5673 -5.9336 19 7 2.8687 -5.3960 -6.6255 20 14 0.7395 -7.1107 -6.1760 21 1 -0.2619 -6.8772 -7.2474 22 1 1.6261 -8.2371 -6.5639 23 1 0.0402 -7.4448 -4.9093 24 1 -0.3633 -1.0274 0.0196 25 1 -0.3633 0.5308 0.8801 26 1 -0.3634 0.4968 -0.8995 27 1 3.1430 1.4278 0.0196 28 1 1.7107 1.9491 -0.8996 29 1 1.8547 3.0428 1.2189 30 1 1.2885 -0.7951 2.0191 31 1 2.9606 -0.2816 1.6196 32 1 1.4521 -2.7778 0.6578 33 1 3.1328 -2.6592 1.2790 34 1 2.7177 -2.7048 -1.3934 35 1 3.9123 -1.5588 -0.7116 36 1 2.8047 -0.9205 -5.5757 37 1 1.4199 -0.1452 -5.0786 38 1 1.4510 -3.0100 -2.8403 39 1 0.5233 -2.1932 -4.1211 40 1 2.2578 -2.8216 -5.7781 41 1 3.1855 -3.6382 -4.4972 42 1 3.1524 -6.0713 -7.2615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722979266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:51 Heat of formation + Delta-G solvation = -98.374202 kcal Electronic energy + Delta-G solvation = -21935.992919 eV Core-core repulsion = 18722.286025 eV Total energy + Delta-G solvation = -3213.706895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53676 -38.01368 -36.36795 -35.47875 -32.88798 -31.86182 -31.40691 -29.90168 -26.75145 -26.47514 -25.33536 -23.99514 -22.30042 -20.89463 -20.00343 -18.37275 -17.49988 -17.16297 -16.27346 -15.97563 -15.28598 -14.91578 -14.70381 -14.39933 -14.19213 -13.87316 -13.74602 -13.20738 -13.18390 -12.83023 -12.56750 -12.37476 -12.20796 -11.87531 -11.80076 -11.67977 -11.25094 -11.02681 -10.92715 -10.76279 -10.68740 -10.63414 -10.09913 -9.97875 -9.81944 -9.27972 -9.16665 -8.60638 -8.45115 -8.19131 -6.09842 -4.12961 2.87406 2.95164 3.26325 3.33115 3.36086 4.20760 4.37937 4.41303 4.48347 4.81876 4.97702 5.05149 5.10689 5.18654 5.22784 5.26487 5.43119 5.57289 5.59584 5.64473 5.70961 5.74898 5.76566 5.85829 5.87368 5.99881 6.09757 6.27924 6.35750 6.50012 6.57118 6.86088 7.42006 7.46507 7.50673 7.60274 7.69879 7.87093 7.89613 8.29738 8.43359 8.92932 9.52051 11.01049 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.004415 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.801290 B = 6340.830205 C = 6799.166527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 C 0.072 3.928 4 O -0.569 6.569 5 C -0.114 4.114 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.612 5.612 9 C 0.543 3.457 10 O -0.534 6.534 11 C 0.078 3.922 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.378 0.622 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.354 0.646 37 H 0.345 0.655 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 9.933 15.243 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.082 3.918 3 C -0.006 4.006 4 O -0.374 6.374 5 C -0.152 4.152 6 C -0.172 4.172 7 C -0.030 4.030 8 N -0.349 5.349 9 C 0.333 3.667 10 O -0.410 6.410 11 C -0.037 4.037 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.940 10.344 15.377 18.556 hybrid contribution -0.696 -1.247 -0.748 1.612 sum 0.244 9.097 14.629 17.229 Atomic orbital electron populations 1.22055 0.93580 1.01992 1.03253 1.20765 0.95110 0.90545 0.85363 1.22475 0.96712 0.92968 0.88493 1.86393 1.76540 1.28865 1.45564 1.22639 1.01755 0.94808 0.96042 1.22813 1.02224 0.96977 0.95220 1.22473 0.94577 0.89736 0.96202 1.48567 1.51522 1.30310 1.04505 1.20636 0.79863 0.84278 0.81972 1.90609 1.38326 1.28971 1.83066 1.21452 1.00573 0.92036 0.89612 0.88712 1.58748 1.25841 1.46004 1.05723 1.22394 0.98962 0.94559 1.01789 1.19097 0.95871 0.93537 0.92690 1.21174 1.08774 1.03605 1.22627 0.92740 1.25007 0.95103 0.98434 0.95699 1.69949 1.22510 1.35143 1.25588 0.86589 0.80118 0.82768 0.78526 1.20620 1.21138 1.19872 0.92635 0.91325 0.91205 0.93861 0.92013 0.77492 0.89893 0.90723 0.90349 0.89738 0.89138 0.91307 0.83029 0.84142 0.92451 0.92699 0.96425 0.96352 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.24 37.16 0.31 -1.74 16 2 C 0.17 2.14 0.65 -130.84 -0.08 2.05 16 3 C 0.07 0.89 5.84 37.16 0.22 1.11 16 4 O -0.57 -6.05 12.68 -35.23 -0.45 -6.49 16 5 C -0.11 -1.16 5.76 -24.89 -0.14 -1.30 16 6 C -0.13 -1.30 7.09 -24.58 -0.17 -1.47 16 7 C 0.09 1.09 6.39 -2.53 -0.02 1.08 16 8 N -0.61 -8.67 2.82 -155.81 -0.44 -9.11 16 9 C 0.54 9.29 6.67 -10.99 -0.07 9.21 16 10 O -0.53 -10.39 13.81 5.56 0.08 -10.31 16 11 C 0.08 1.36 2.49 -68.86 -0.17 1.19 16 12 H 0.09 1.58 7.68 -51.93 -0.40 1.18 16 13 N -0.83 -14.49 8.94 -5.65 -0.05 -14.54 16 14 C -0.14 -2.71 4.64 -26.73 -0.12 -2.84 16 15 C 0.03 0.61 4.74 -27.89 -0.13 0.47 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.86 7.66 -51.92 -0.40 0.46 16 26 H 0.07 1.11 6.69 -51.93 -0.35 0.77 16 27 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.06 0.90 6.85 -51.93 -0.36 0.55 16 29 H 0.38 2.37 9.12 45.56 0.42 2.79 16 30 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 31 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.16 6.05 -51.92 -0.31 0.85 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 6.16 7.55 -39.29 -0.30 5.87 16 37 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 38 H 0.06 1.09 6.59 -51.93 -0.34 0.75 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -31.52 331.79 -6.99 -38.51 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.04 Total: 11.20 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.81 Total: -5.28 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.25 Total: -48.78 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.37 Total: -16.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.52 -6.99 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722979266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.864 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds