Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46635 * 2 1 4 4 H 1.09003 * 109.47555 * 55.99823 * 3 2 1 5 5 N 1.46903 * 109.47542 * 295.99754 * 3 2 1 6 6 C 1.46894 * 110.99908 * 100.80394 * 5 3 2 7 7 C 1.50706 * 109.46986 * 178.24488 * 6 5 3 8 8 O 1.21289 * 119.99770 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00011 * 180.02562 * 7 6 5 10 10 C 1.37094 * 119.99951 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00169 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99499 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00234 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47335 * 59.99629 * 14 12 10 16 16 H 1.48499 * 109.47232 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47357 * 299.99805 * 14 12 10 18 18 C 1.53005 * 109.46961 * 175.99646 * 3 2 1 19 19 H 1.09000 * 109.52275 * 304.87604 * 18 3 2 20 20 C 1.53177 * 109.57090 * 184.71826 * 18 3 2 21 21 C 1.53182 * 109.03325 * 183.08349 * 20 18 3 22 22 C 1.53088 * 109.16331 * 56.97962 * 21 20 18 23 23 O 1.42904 * 109.42869 * 302.39965 * 22 21 20 24 24 C 1.42906 * 114.09778 * 61.13244 * 23 22 21 25 25 H 1.08996 * 109.47124 * 59.92240 * 1 2 3 26 26 H 1.09004 * 109.46664 * 179.91556 * 1 2 3 27 27 H 1.08994 * 109.47089 * 299.91558 * 1 2 3 28 28 H 1.08999 * 109.47060 * 240.00349 * 2 1 3 29 29 H 1.09000 * 109.47291 * 120.00081 * 2 1 3 30 30 H 1.00901 * 110.99336 * 336.84904 * 5 3 2 31 31 H 1.09002 * 109.47122 * 298.23905 * 6 5 3 32 32 H 1.08997 * 109.47669 * 58.24163 * 6 5 3 33 33 H 0.97005 * 119.99918 * 359.97438 * 9 7 6 34 34 H 0.97002 * 119.99682 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.54662 * 302.94991 * 20 18 3 36 36 H 1.09002 * 109.54646 * 63.13056 * 20 18 3 37 37 H 1.08998 * 109.52388 * 176.88419 * 21 20 18 38 38 H 1.08997 * 109.52357 * 297.07545 * 21 20 18 39 39 H 1.09001 * 109.48080 * 62.37446 * 22 21 20 40 40 H 1.09006 * 109.48355 * 182.39528 * 22 21 20 41 41 H 1.08997 * 109.47658 * 178.87168 * 24 23 22 42 42 H 1.09001 * 109.47290 * 58.85881 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6192 1.9767 0.8519 5 7 1.6307 2.1066 -1.2448 6 6 0.4588 2.9641 -1.0234 7 6 0.0955 3.6602 -2.3097 8 8 0.7489 3.4619 -3.3121 9 7 -0.9550 4.5040 -2.3459 10 6 -1.2851 5.1377 -3.5159 11 1 -0.7033 4.9611 -4.4085 12 6 -2.3684 6.0071 -3.5535 13 7 -3.0766 6.2215 -2.4675 14 14 -2.8178 6.8711 -5.1474 15 1 -3.1340 5.8589 -6.1870 16 1 -4.0031 7.7373 -4.9239 17 1 -1.6739 7.7035 -5.5989 18 6 3.5666 1.4438 0.1007 19 1 3.8742 0.8764 0.9791 20 6 4.0718 2.8850 0.2194 21 6 5.6035 2.8772 0.2418 22 6 6.1209 2.1822 -1.0203 23 8 5.5890 0.8575 -1.0855 24 6 4.1627 0.8042 -1.1559 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0015 27 1 -0.3633 0.5125 0.8907 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4524 1.4313 -1.9731 31 1 -0.3807 2.3533 -0.6913 32 1 0.6912 3.7075 -0.2610 33 1 -1.4773 4.6628 -1.5441 34 1 -3.8331 6.8282 -2.4938 35 1 3.7226 3.4654 -0.6345 36 1 3.6947 3.3289 1.1408 37 1 5.9726 3.9024 0.2703 38 1 5.9522 2.3388 1.1230 39 1 5.8058 2.7439 -1.8997 40 1 7.2095 2.1359 -0.9895 41 1 3.8407 -0.2350 -1.2227 42 1 3.8218 1.3477 -2.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723992492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = -101.586460 kcal Electronic energy + Delta-G solvation = -21578.376797 eV Core-core repulsion = 18364.530608 eV Total energy + Delta-G solvation = -3213.846189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71395 -38.27422 -36.88973 -33.95127 -33.28419 -31.92046 -31.16770 -31.01766 -27.14732 -25.38566 -24.91135 -23.69204 -22.85729 -20.65123 -19.62593 -19.17210 -17.88135 -16.25316 -16.19501 -15.80742 -15.58649 -15.02672 -14.75744 -14.41015 -14.12009 -13.98423 -13.76762 -13.35943 -13.15826 -12.89466 -12.51659 -12.31028 -12.04656 -11.79918 -11.59351 -11.48954 -11.15571 -11.06236 -11.02306 -10.94566 -10.85543 -10.44186 -10.34867 -10.20752 -10.07884 -9.49224 -9.32096 -8.42420 -7.98350 -7.92231 -6.41163 -3.81901 3.20287 3.25880 3.30337 3.92582 3.97117 4.11317 4.36401 4.61664 4.82397 4.96655 5.02318 5.11585 5.11834 5.14494 5.22125 5.27779 5.40618 5.53149 5.57580 5.67369 5.69748 5.75977 5.77594 5.89351 5.92572 5.96007 6.01973 6.07381 6.11493 6.13904 6.23808 6.24453 6.31244 6.58142 7.24191 7.33301 7.55404 7.69910 8.07029 8.62305 9.18683 9.55460 10.07169 10.76575 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.004189 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.074993 B = 6682.743525 C = 7307.711713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C 0.091 3.909 4 H 0.074 0.926 5 N -0.659 5.659 6 C 0.047 3.953 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.565 5.565 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.103 4.103 19 H 0.070 0.930 20 C -0.114 4.114 21 C -0.154 4.154 22 C 0.061 3.939 23 O -0.390 6.390 24 C 0.064 3.936 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.349 0.651 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.437 -9.352 8.810 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C -0.020 4.020 4 H 0.092 0.908 5 N -0.291 5.291 6 C -0.086 4.086 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.202 5.202 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.122 4.122 19 H 0.089 0.911 20 C -0.151 4.151 21 C -0.192 4.192 22 C -0.016 4.016 23 O -0.309 6.309 24 C -0.012 4.012 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.259 -8.995 8.216 16.588 hybrid contribution -1.594 0.229 -0.017 1.611 sum 9.665 -8.766 8.199 15.410 Atomic orbital electron populations 1.21907 0.95692 1.01777 1.02277 1.22249 0.96285 0.97870 1.02516 1.21619 0.94292 0.92722 0.93370 0.90753 1.60158 1.36528 1.25488 1.06950 1.21847 0.92196 0.96802 0.97715 1.19862 0.83482 0.84237 0.89775 1.90519 1.53488 1.66718 1.35989 1.41868 1.26645 1.39088 1.12564 1.19645 1.11921 1.21348 0.89974 0.88030 1.25248 0.96234 0.97748 0.98668 1.69607 1.19632 1.37322 1.27858 0.85927 0.77887 0.79123 0.81337 1.19940 1.20991 1.19904 1.21730 0.94642 0.97106 0.98757 0.91148 1.21563 0.93969 0.96568 1.03015 1.22179 0.97193 1.00909 0.98921 1.22528 0.98104 0.83966 0.96988 1.87863 1.21195 1.27047 1.94791 1.22667 0.79913 1.00862 0.97779 0.92135 0.92702 0.92646 0.91425 0.91549 0.83136 0.93458 0.89871 0.77524 0.91856 0.89798 0.92360 0.91257 0.91797 0.92915 0.89617 0.89749 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.93 37.16 0.33 -1.38 16 2 C -0.15 -1.55 4.91 -26.73 -0.13 -1.68 16 3 C 0.09 1.07 1.92 -67.71 -0.13 0.94 16 4 H 0.07 0.87 7.59 -51.93 -0.39 0.48 16 5 N -0.66 -9.94 4.05 -107.99 -0.44 -10.38 16 6 C 0.05 0.80 5.54 -4.98 -0.03 0.77 16 7 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 8 O -0.58 -15.59 15.82 5.55 0.09 -15.50 16 9 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.10 -1.19 2.21 -90.48 -0.20 -1.40 16 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.11 -1.38 5.23 -26.55 -0.14 -1.52 16 21 C -0.15 -1.67 6.14 -26.59 -0.16 -1.83 16 22 C 0.06 0.71 6.84 37.20 0.25 0.96 16 23 O -0.39 -5.27 10.77 -35.23 -0.38 -5.65 16 24 C 0.06 0.81 5.65 37.20 0.21 1.02 16 25 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.69 6.74 -51.93 -0.35 0.34 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.35 5.54 7.71 -39.29 -0.30 5.24 16 31 H 0.05 0.73 5.84 -51.93 -0.30 0.43 16 32 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 33 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.96 6.78 -51.93 -0.35 0.61 16 42 H 0.07 1.01 7.39 -51.93 -0.38 0.63 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -30.19 330.61 -7.28 -37.46 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.85 Total: 13.07 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.32 Total: -1.94 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.23 Total: -48.47 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.29 Total: -21.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.19 -7.28 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723992492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.125 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds