Wall clock time and date at job start Mon Mar 30 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99935 * 2 1 4 4 C 1.50701 * 109.46866 * 269.99757 * 3 2 1 5 5 H 1.07997 * 119.99901 * 359.72711 * 4 3 2 6 6 C 1.37880 * 119.99707 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99687 * 179.72607 * 6 4 3 8 8 Si 1.86799 * 120.00167 * 359.72567 * 6 4 3 9 9 H 1.48496 * 109.46844 * 89.99981 * 8 6 4 10 10 H 1.48493 * 109.47133 * 209.99995 * 8 6 4 11 11 H 1.48500 * 109.46955 * 330.00043 * 8 6 4 12 12 C 1.34777 * 120.00077 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00173 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99826 * 0.02562 * 12 2 1 15 15 N 1.46899 * 109.47184 * 179.97438 * 14 12 2 16 16 C 1.46849 * 110.99862 * 72.36631 * 15 14 12 17 17 C 1.53041 * 109.52228 * 185.84239 * 16 15 14 18 18 C 1.53116 * 109.27559 * 300.81998 * 17 16 15 19 19 C 1.53120 * 109.16087 * 57.65633 * 18 17 16 20 20 C 1.46843 * 111.00299 * 196.57581 * 15 14 12 21 21 H 1.08998 * 109.46071 * 294.17610 * 20 15 14 22 22 C 1.53006 * 109.45922 * 54.14569 * 20 15 14 23 23 O 1.42896 * 109.46958 * 62.97032 * 22 20 15 24 24 H 1.08997 * 109.47066 * 90.00248 * 1 2 3 25 25 H 1.09001 * 109.46750 * 210.00440 * 1 2 3 26 26 H 1.09000 * 109.46855 * 330.00026 * 1 2 3 27 27 H 1.09002 * 109.46782 * 150.00402 * 3 2 1 28 28 H 1.09001 * 109.47242 * 30.00175 * 3 2 1 29 29 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46887 * 299.99747 * 14 12 2 31 31 H 1.08997 * 109.47443 * 59.99743 * 14 12 2 32 32 H 1.09002 * 109.46787 * 305.85484 * 16 15 14 33 33 H 1.08994 * 109.46376 * 65.84019 * 16 15 14 34 34 H 1.08996 * 109.50371 * 60.75841 * 17 16 15 35 35 H 1.09003 * 109.50310 * 180.84263 * 17 16 15 36 36 H 1.09001 * 109.52484 * 177.56175 * 18 17 16 37 37 H 1.08998 * 109.52615 * 297.75133 * 18 17 16 38 38 H 1.08995 * 109.50240 * 62.28597 * 19 18 17 39 39 H 1.09005 * 109.49911 * 182.40067 * 19 18 17 40 40 H 1.09001 * 109.46867 * 182.97436 * 22 20 15 41 41 H 1.09002 * 109.46727 * 302.97015 * 22 20 15 42 42 H 0.96707 * 113.99690 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.1017 1.0936 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3509 3.2542 -2.9127 8 14 3.7277 3.9322 -0.2530 9 1 5.0997 3.5122 0.1296 10 1 3.7441 5.3579 -0.6679 11 1 2.8170 3.7649 0.9079 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3399 -3.5889 0.0005 16 6 2.9975 -3.7190 1.3071 17 6 4.0850 -4.7929 1.2276 18 6 3.4507 -6.1254 0.8196 19 6 2.7314 -5.9501 -0.5208 20 6 1.6832 -4.8427 -0.3906 21 1 0.9523 -5.1219 0.3683 22 6 0.9756 -4.6502 -1.7334 23 8 1.9421 -4.3514 -2.7426 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1383 0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.8277 4.0802 -3.0900 30 1 0.7584 -2.5298 0.8903 31 1 0.7590 -2.5303 -0.8896 32 1 3.4481 -2.7658 1.5835 33 1 2.2605 -4.0037 2.0579 34 1 4.8298 -4.5024 0.4867 35 1 4.5629 -4.8997 2.2014 36 1 4.2277 -6.8833 0.7196 37 1 2.7338 -6.4355 1.5798 38 1 3.4550 -5.6778 -1.2891 39 1 2.2417 -6.8843 -0.7958 40 1 0.4442 -5.5643 -1.9984 41 1 0.2655 -3.8269 -1.6551 42 1 1.5635 -4.2169 -3.6223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042222052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:50 Heat of formation + Delta-G solvation = -69.785062 kcal Electronic energy + Delta-G solvation = -22057.598523 eV Core-core repulsion = 18845.131346 eV Total energy + Delta-G solvation = -3212.467177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84222 -38.32271 -36.21852 -34.79553 -33.46332 -32.43426 -31.36416 -29.01182 -27.18822 -26.13034 -25.60323 -23.34733 -22.02851 -21.16514 -19.61262 -18.38232 -17.27751 -16.90293 -16.60425 -15.83654 -15.61290 -14.99056 -14.67183 -14.24905 -14.06692 -14.02111 -13.47348 -13.15207 -12.93105 -12.82447 -12.55047 -12.38386 -12.17842 -11.99679 -11.61275 -11.54558 -11.40495 -11.11936 -10.82833 -10.70640 -10.49687 -10.32936 -10.23554 -10.06670 -9.77487 -9.47241 -8.88883 -8.53150 -8.00233 -7.60113 -6.02810 -4.00714 3.32713 3.38445 3.40488 3.45310 3.64619 4.19221 4.31726 4.44559 4.73310 4.79304 4.96348 5.03569 5.18326 5.28813 5.31252 5.33208 5.33438 5.39485 5.55209 5.58783 5.62693 5.69561 5.78273 5.89787 5.94327 5.94753 6.00212 6.15536 6.29466 6.31223 6.51012 6.73062 6.97846 7.18534 7.28321 7.43963 7.67780 7.75952 8.34756 8.54188 9.00997 9.13745 9.57863 11.10883 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.004925 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.890744 B = 5683.795951 C = 5944.010392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.604 5.604 3 C 0.218 3.782 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.510 3.490 13 O -0.518 6.518 14 C 0.034 3.966 15 N -0.502 5.502 16 C 0.058 3.942 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.106 4.106 20 C 0.087 3.913 21 H 0.047 0.953 22 C 0.077 3.923 23 O -0.549 6.549 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.028 0.972 29 H 0.264 0.736 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 -17.755 7.433 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.338 5.338 3 C 0.097 3.903 4 C -0.564 4.564 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.295 3.705 13 O -0.393 6.393 14 C -0.097 4.097 15 N -0.227 5.227 16 C -0.070 4.070 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.144 4.144 20 C -0.021 4.021 21 H 0.065 0.935 22 C -0.001 4.001 23 O -0.353 6.353 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.645 -17.553 7.498 20.211 hybrid contribution -0.923 0.625 0.639 1.285 sum -7.569 -16.928 8.137 20.250 Atomic orbital electron populations 1.21611 0.81314 1.01436 1.01365 1.47844 1.06036 1.07128 1.72786 1.19636 0.92387 0.79972 0.98303 1.21345 1.36757 1.06911 0.91357 0.90802 1.24862 0.95270 0.97416 0.95529 1.69903 1.41604 1.23609 1.18640 0.86844 0.80109 0.79722 0.82953 1.19922 1.21131 1.19165 1.20135 0.88263 0.84510 0.77567 1.90652 1.13631 1.86709 1.48287 1.22135 0.94455 0.91055 1.02077 1.61394 1.29735 1.01936 1.29684 1.22164 0.95928 1.00750 0.88152 1.21547 0.98277 0.93928 1.01494 1.21603 0.99532 0.97625 0.97073 1.21505 0.98407 0.96155 0.98315 1.21713 0.95241 0.90827 0.94325 0.93548 1.22314 0.90707 0.98332 0.88738 1.86676 1.35032 1.93665 1.19880 0.92987 0.92759 0.91456 0.94691 0.95423 0.92645 0.93004 0.88082 0.89292 0.95988 0.90590 0.91908 0.91959 0.92764 0.89793 0.92112 0.93615 0.93519 0.78067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.29 59.85 0.62 1.96 16 2 N -0.60 -12.79 2.86 -182.95 -0.52 -13.31 16 3 C 0.22 5.47 4.27 -5.19 -0.02 5.45 16 4 C -0.53 -15.52 9.94 -34.44 -0.34 -15.87 16 5 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 8 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.51 10.81 7.36 -10.98 -0.08 10.73 16 13 O -0.52 -13.29 14.46 5.56 0.08 -13.21 16 14 C 0.03 0.53 3.83 -4.97 -0.02 0.51 16 15 N -0.50 -7.90 4.03 -228.12 -0.92 -8.82 16 16 C 0.06 0.85 5.11 -3.83 -0.02 0.83 16 17 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 18 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 19 C -0.11 -1.23 5.21 -26.65 -0.14 -1.37 16 20 C 0.09 1.07 2.23 -67.72 -0.15 0.92 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 C 0.08 0.86 6.29 37.16 0.23 1.10 16 23 O -0.55 -7.44 12.77 -35.23 -0.45 -7.89 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 26 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 27 H 0.04 0.94 6.86 -51.93 -0.36 0.58 16 28 H 0.03 0.66 6.94 -51.93 -0.36 0.30 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.05 0.68 7.31 -51.93 -0.38 0.30 16 31 H 0.10 1.47 5.28 -51.93 -0.27 1.19 16 32 H 0.09 1.57 6.39 -51.93 -0.33 1.23 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.50 5.82 -51.93 -0.30 0.20 16 42 H 0.37 3.47 9.12 45.56 0.42 3.89 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -36.64 327.67 -7.24 -43.87 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.12 Total: 1.40 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.34 Total: 3.20 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.67 Total: -49.68 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.37 Total: -21.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.64 -7.24 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042222052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.911 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds