Wall clock time and date at job start Mon Mar 30 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99935 * 2 1 4 4 C 1.50701 * 109.46866 * 269.99757 * 3 2 1 5 5 H 1.07997 * 119.99901 * 359.72711 * 4 3 2 6 6 C 1.37880 * 119.99707 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99687 * 179.72607 * 6 4 3 8 8 Si 1.86799 * 120.00167 * 359.72567 * 6 4 3 9 9 H 1.48496 * 109.46844 * 89.99981 * 8 6 4 10 10 H 1.48493 * 109.47133 * 209.99995 * 8 6 4 11 11 H 1.48500 * 109.46955 * 330.00043 * 8 6 4 12 12 C 1.34777 * 120.00077 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00173 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99826 * 0.02562 * 12 2 1 15 15 N 1.46899 * 109.47184 * 179.97438 * 14 12 2 16 16 C 1.46849 * 110.99862 * 72.36631 * 15 14 12 17 17 C 1.53041 * 109.52228 * 185.84239 * 16 15 14 18 18 C 1.53116 * 109.27559 * 300.81998 * 17 16 15 19 19 C 1.53120 * 109.16087 * 57.65633 * 18 17 16 20 20 C 1.46843 * 111.00299 * 196.57581 * 15 14 12 21 21 H 1.08998 * 109.46071 * 294.17610 * 20 15 14 22 22 C 1.53006 * 109.45922 * 54.14569 * 20 15 14 23 23 O 1.42896 * 109.46958 * 62.97032 * 22 20 15 24 24 H 1.08997 * 109.47066 * 90.00248 * 1 2 3 25 25 H 1.09001 * 109.46750 * 210.00440 * 1 2 3 26 26 H 1.09000 * 109.46855 * 330.00026 * 1 2 3 27 27 H 1.09002 * 109.46782 * 150.00402 * 3 2 1 28 28 H 1.09001 * 109.47242 * 30.00175 * 3 2 1 29 29 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46887 * 299.99747 * 14 12 2 31 31 H 1.08997 * 109.47443 * 59.99743 * 14 12 2 32 32 H 1.09002 * 109.46787 * 305.85484 * 16 15 14 33 33 H 1.08994 * 109.46376 * 65.84019 * 16 15 14 34 34 H 1.08996 * 109.50371 * 60.75841 * 17 16 15 35 35 H 1.09003 * 109.50310 * 180.84263 * 17 16 15 36 36 H 1.09001 * 109.52484 * 177.56175 * 18 17 16 37 37 H 1.08998 * 109.52615 * 297.75133 * 18 17 16 38 38 H 1.08995 * 109.50240 * 62.28597 * 19 18 17 39 39 H 1.09005 * 109.49911 * 182.40067 * 19 18 17 40 40 H 1.09001 * 109.46867 * 182.97436 * 22 20 15 41 41 H 1.09002 * 109.46727 * 302.97015 * 22 20 15 42 42 H 0.96707 * 113.99690 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.1017 1.0936 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3509 3.2542 -2.9127 8 14 3.7277 3.9322 -0.2530 9 1 5.0997 3.5122 0.1296 10 1 3.7441 5.3579 -0.6679 11 1 2.8170 3.7649 0.9079 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3399 -3.5889 0.0005 16 6 2.9975 -3.7190 1.3071 17 6 4.0850 -4.7929 1.2276 18 6 3.4507 -6.1254 0.8196 19 6 2.7314 -5.9501 -0.5208 20 6 1.6832 -4.8427 -0.3906 21 1 0.9523 -5.1219 0.3683 22 6 0.9756 -4.6502 -1.7334 23 8 1.9421 -4.3514 -2.7426 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1383 0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.8277 4.0802 -3.0900 30 1 0.7584 -2.5298 0.8903 31 1 0.7590 -2.5303 -0.8896 32 1 3.4481 -2.7658 1.5835 33 1 2.2605 -4.0037 2.0579 34 1 4.8298 -4.5024 0.4867 35 1 4.5629 -4.8997 2.2014 36 1 4.2277 -6.8833 0.7196 37 1 2.7338 -6.4355 1.5798 38 1 3.4550 -5.6778 -1.2891 39 1 2.2417 -6.8843 -0.7958 40 1 0.4442 -5.5643 -1.9984 41 1 0.2655 -3.8269 -1.6551 42 1 1.5635 -4.2169 -3.6223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042222052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:50 Heat of formation + Delta-G solvation = -99.951522 kcal Electronic energy + Delta-G solvation = -22058.906639 eV Core-core repulsion = 18845.131346 eV Total energy + Delta-G solvation = -3213.775292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11929 -39.69589 -37.19938 -36.52693 -34.80441 -34.40690 -32.34523 -30.86823 -28.50112 -27.26755 -26.98436 -24.74422 -23.62717 -22.20606 -20.58359 -19.96567 -19.14735 -18.22528 -17.98394 -17.23296 -16.89566 -16.58367 -15.99820 -15.73809 -15.40617 -14.95274 -14.87736 -14.52125 -14.22300 -14.05813 -13.90483 -13.80859 -13.61389 -13.41833 -13.23526 -12.82373 -12.69988 -12.47729 -12.41248 -12.12571 -12.00430 -11.75123 -11.64052 -11.34875 -11.13529 -10.83153 -10.67746 -10.51454 -9.35774 -9.08537 -8.33844 -6.38576 1.31271 1.36550 1.44553 1.86554 2.25943 2.31040 2.97015 3.00619 3.49552 3.72367 3.88113 3.91531 4.00544 4.11901 4.23769 4.37630 4.42479 4.45488 4.48116 4.59552 4.65356 4.69105 4.71992 4.78807 4.90214 4.93230 4.94794 4.96780 5.03568 5.09233 5.28801 5.32822 5.46741 5.55367 5.65619 6.07666 6.25711 6.28807 6.62476 6.76935 7.01114 7.22600 7.52765 8.83609 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.004925 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.890744 B = 5683.795951 C = 5944.010392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.225 3.775 4 C -0.535 4.535 5 H 0.024 0.976 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.236 1.236 12 C 0.497 3.503 13 O -0.577 6.577 14 C 0.048 3.952 15 N -0.536 5.536 16 C 0.059 3.941 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.104 4.104 20 C 0.083 3.917 21 H 0.076 0.924 22 C 0.072 3.928 23 O -0.583 6.583 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.014 0.986 28 H 0.052 0.948 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 -19.163 9.793 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.346 5.346 3 C 0.103 3.897 4 C -0.573 4.573 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.159 1.159 12 C 0.285 3.715 13 O -0.456 6.456 14 C -0.082 4.082 15 N -0.262 5.262 16 C -0.068 4.068 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.024 4.024 21 H 0.094 0.906 22 C -0.006 4.006 23 O -0.390 6.390 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.007 -18.989 9.855 23.212 hybrid contribution -0.219 1.000 -0.205 1.044 sum -9.225 -17.989 9.649 22.401 Atomic orbital electron populations 1.21938 0.77706 1.04442 1.02126 1.47986 1.08385 1.05868 1.72334 1.19310 0.92670 0.82608 0.95135 1.21578 1.36762 1.06519 0.92481 0.95724 1.25892 0.95233 0.99054 0.98712 1.70061 1.42769 1.24561 1.21361 0.85676 0.79468 0.77716 0.79818 1.20447 1.19812 1.15923 1.21280 0.88052 0.86275 0.75892 1.90619 1.16438 1.87714 1.50786 1.22033 0.93944 0.87949 1.04311 1.61284 1.30957 1.03469 1.30459 1.22082 0.96768 0.99305 0.88646 1.21536 0.97335 0.94973 1.01345 1.21574 1.00159 0.96213 0.97157 1.21496 0.97846 0.97132 0.97743 1.21918 0.95811 0.89153 0.95558 0.90647 1.22513 0.90251 1.00050 0.87750 1.86640 1.37002 1.93955 1.21366 0.93299 0.88179 0.90102 0.96750 0.93045 0.92299 0.89284 0.86682 0.93209 0.93351 0.94103 0.90363 0.90898 0.90425 0.93290 0.89435 0.90375 0.92976 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.29 127.77 1.31 3.59 16 2 N -0.61 -25.68 2.86 -851.12 -2.43 -28.11 16 3 C 0.23 11.37 4.27 85.63 0.37 11.74 16 4 C -0.53 -32.71 9.94 25.60 0.25 -32.45 16 5 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 6 C 0.01 0.53 5.47 84.66 0.46 0.99 16 7 N -0.95 -61.67 13.96 21.45 0.30 -61.37 16 8 Si 0.95 45.76 27.47 68.60 1.88 47.65 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 12 C 0.50 21.22 7.36 87.66 0.65 21.86 16 13 O -0.58 -30.98 14.46 -3.01 -0.04 -31.02 16 14 C 0.05 1.42 3.83 85.56 0.33 1.75 16 15 N -0.54 -16.25 4.03 -875.65 -3.53 -19.78 16 16 C 0.06 1.71 5.11 86.33 0.44 2.15 16 17 C -0.11 -2.90 6.09 30.65 0.19 -2.71 16 18 C -0.11 -2.16 6.00 30.67 0.18 -1.98 16 19 C -0.10 -2.20 5.21 30.64 0.16 -2.04 16 20 C 0.08 1.80 2.23 44.94 0.10 1.90 16 21 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.07 1.42 6.29 71.98 0.45 1.87 16 23 O -0.58 -15.57 12.77 -148.98 -1.90 -17.47 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.92 6.44 -2.39 -0.02 1.91 16 26 H 0.08 2.09 7.89 -2.39 -0.02 2.07 16 27 H 0.01 0.79 6.86 -2.39 -0.02 0.77 16 28 H 0.05 2.35 6.94 -2.39 -0.02 2.33 16 29 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 30 H 0.09 1.96 7.31 -2.39 -0.02 1.94 16 31 H 0.12 3.06 5.28 -2.39 -0.01 3.05 16 32 H 0.05 1.81 6.39 -2.39 -0.02 1.79 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.38 7.59 -2.39 -0.02 1.36 16 39 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.95 5.82 -2.39 -0.01 0.94 16 42 H 0.39 7.14 9.12 -74.05 -0.68 6.46 16 Total: -1.00 -85.95 327.67 -0.55 -86.50 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.28 Total: 16.93 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.90 Total: 6.67 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -5.66 Total: -109.26 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.95 Total: -48.49 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.65 kcal Total: -85.95 -0.55 -86.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042222052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.450 kcal (2) G-P(sol) polarization free energy of solvation -85.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds