Wall clock time and date at job start Mon Mar 30 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00570 * 2 1 4 4 C 1.52992 * 109.47543 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47168 * 64.99562 * 4 3 2 6 6 C 1.46502 * 120.00337 * 270.00064 * 5 4 3 7 7 C 1.50702 * 109.47046 * 263.73491 * 6 5 4 8 8 H 1.08000 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99546 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99560 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00320 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46765 * 90.00198 * 11 9 7 13 13 H 1.48497 * 109.47411 * 210.00163 * 11 9 7 14 14 H 1.48498 * 109.47142 * 330.00552 * 11 9 7 15 15 C 1.34773 * 119.99993 * 90.00146 * 5 4 3 16 16 O 1.21290 * 119.99921 * 4.81441 * 15 5 4 17 17 C 1.50698 * 120.00389 * 184.81523 * 15 5 4 18 18 C 1.53116 * 109.52470 * 195.71710 * 17 15 5 19 19 C 1.53044 * 109.27701 * 182.44303 * 18 17 15 20 20 N 1.46837 * 109.52710 * 59.18165 * 19 18 17 21 21 C 1.46853 * 111.19465 * 298.26011 * 20 19 18 22 22 C 1.53037 * 109.52491 * 61.73995 * 21 20 19 23 23 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46864 * 300.00164 * 1 2 3 25 25 H 1.08997 * 109.46900 * 59.99924 * 1 2 3 26 26 H 1.08997 * 109.46802 * 59.99356 * 3 2 1 27 27 H 1.09006 * 109.46418 * 300.00050 * 3 2 1 28 28 H 1.09004 * 109.47200 * 304.99874 * 4 3 2 29 29 H 1.09000 * 109.47130 * 184.99624 * 4 3 2 30 30 H 1.09003 * 109.46562 * 23.73472 * 6 5 4 31 31 H 1.09001 * 109.46905 * 143.73239 * 6 5 4 32 32 H 0.97002 * 119.99784 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.57355 * 315.88098 * 17 15 5 34 34 H 1.08997 * 109.50311 * 62.50590 * 18 17 15 35 35 H 1.08999 * 109.50679 * 302.37898 * 18 17 15 36 36 H 1.09002 * 109.46194 * 299.15962 * 19 18 17 37 37 H 1.09002 * 109.46076 * 179.20296 * 19 18 17 38 38 H 1.00902 * 111.00171 * 62.35204 * 20 19 18 39 39 H 1.09002 * 109.45887 * 181.75756 * 21 20 19 40 40 H 1.09000 * 109.46278 * 301.71800 * 21 20 19 41 41 H 1.09007 * 109.49991 * 180.87718 * 22 21 20 42 42 H 1.09001 * 109.50050 * 60.76551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1063 -0.8928 -1.3402 7 6 5.5396 -1.2858 -1.0911 8 1 6.2801 -0.5265 -0.8871 9 6 5.9056 -2.6147 -1.1237 10 7 7.1567 -2.9576 -0.9069 11 14 4.6248 -3.9279 -1.4759 12 1 4.5523 -4.1688 -2.9395 13 1 5.0036 -5.1867 -0.7852 14 1 3.3002 -3.4722 -0.9831 15 6 4.2634 1.3326 -2.3200 16 8 4.2408 2.5413 -2.2213 17 6 4.6121 0.6907 -3.6381 18 6 5.2639 1.7283 -4.5561 19 6 5.5600 1.0868 -5.9137 20 7 4.3098 0.5975 -6.5084 21 6 3.6899 -0.4344 -5.6673 22 6 3.3380 0.1617 -4.3025 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0901 30 1 3.4659 -1.3610 -0.5926 31 1 3.8062 -1.2239 -2.3344 32 1 7.4141 -3.8926 -0.9294 33 1 5.3049 -0.1340 -3.4706 34 1 6.1942 2.0774 -4.1079 35 1 4.5860 2.5710 -4.6920 36 1 6.2489 0.2529 -5.7788 37 1 6.0113 1.8270 -6.5744 38 1 3.6689 1.3578 -6.6794 39 1 2.7828 -0.7990 -6.1492 40 1 4.3874 -1.2613 -5.5336 41 1 2.8921 -0.6085 -3.6730 42 1 2.6297 0.9797 -4.4344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:01 Heat of formation + Delta-G solvation = -88.070565 kcal Electronic energy + Delta-G solvation = -22490.491911 eV Core-core repulsion = 19277.231816 eV Total energy + Delta-G solvation = -3213.260095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86535 -37.98825 -37.22425 -35.03659 -32.61369 -31.86556 -30.61410 -29.79236 -27.57828 -26.13507 -24.37076 -22.81552 -22.39363 -22.21096 -20.21786 -18.31669 -17.05772 -16.68084 -16.15508 -15.81307 -15.66807 -15.19639 -14.57949 -14.45658 -14.21574 -14.14872 -14.04213 -13.18137 -12.65623 -12.59011 -12.53191 -12.11572 -12.03192 -11.81925 -11.66083 -11.60982 -11.46471 -11.01278 -10.98507 -10.82249 -10.50618 -10.25977 -10.19754 -10.13701 -9.59879 -9.53597 -9.09446 -8.68723 -8.18342 -7.73369 -6.18545 -4.19451 3.20394 3.29432 3.31576 3.33103 3.80075 4.02366 4.30765 4.47902 5.01623 5.10593 5.14817 5.17415 5.26189 5.34641 5.36738 5.50297 5.52710 5.59591 5.61607 5.69436 5.71937 5.73518 5.92336 6.01425 6.09485 6.11985 6.23062 6.26923 6.28520 6.42810 6.58716 6.69903 6.86252 7.15579 7.31428 7.39680 7.50351 7.51088 8.17724 8.43557 8.84501 8.94708 9.41444 10.94069 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.009425 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.392740 B = 2969.956714 C = 4239.995711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.583 5.583 6 C 0.209 3.791 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.867 3.133 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.526 3.474 16 O -0.577 6.577 17 C -0.107 4.107 18 C -0.134 4.134 19 C 0.056 3.944 20 N -0.686 5.686 21 C 0.058 3.942 22 C -0.145 4.145 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.336 0.664 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 5.530 -4.521 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.312 5.312 6 C 0.088 3.912 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.693 3.307 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.315 3.685 16 O -0.459 6.459 17 C -0.128 4.128 18 C -0.173 4.173 19 C -0.074 4.074 20 N -0.314 5.314 21 C -0.072 4.072 22 C -0.184 4.184 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.190 5.329 -4.858 12.483 hybrid contribution -1.091 -0.135 0.861 1.397 sum -11.281 5.194 -3.997 13.046 Atomic orbital electron populations 1.22689 0.82061 1.02360 0.99363 1.88014 1.18777 1.27760 1.95252 1.23051 0.95309 0.84737 0.99840 1.21366 0.90843 1.00019 0.88276 1.47833 1.64112 1.08990 1.10263 1.19913 0.97936 0.75495 0.97811 1.21429 0.92940 0.93685 1.49888 0.90615 1.24850 0.95116 0.98299 0.94373 1.69900 1.16472 1.17761 1.48841 0.86968 0.82794 0.81787 0.79112 1.19796 1.20988 1.18448 1.20474 0.75645 0.86523 0.85885 1.90567 1.55080 1.14713 1.85502 1.21312 0.99048 1.00274 0.92187 1.22037 1.01468 0.97764 0.96050 1.22059 0.92467 0.99593 0.93251 1.60712 1.07385 1.16055 1.47267 1.22031 0.99512 0.95148 0.90495 1.22232 0.96666 1.01101 0.98447 0.89932 0.94534 0.94583 0.93013 0.93459 0.89456 0.89143 0.93714 0.95255 0.92434 0.86669 0.91203 0.91620 0.90528 0.90834 0.84705 0.90816 0.90299 0.90400 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.32 9.65 -35.23 -0.34 -6.66 16 3 C 0.05 0.76 6.28 37.15 0.23 0.99 16 4 C 0.12 2.17 5.82 -4.04 -0.02 2.14 16 5 N -0.58 -12.12 2.44 -175.06 -0.43 -12.55 16 6 C 0.21 4.73 3.64 -5.19 -0.02 4.71 16 7 C -0.54 -14.40 9.13 -34.44 -0.31 -14.72 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 11 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 15 C 0.53 10.89 6.82 -10.99 -0.07 10.81 16 16 O -0.58 -12.85 15.51 5.55 0.09 -12.76 16 17 C -0.11 -1.95 1.75 -91.65 -0.16 -2.11 16 18 C -0.13 -2.15 4.83 -26.65 -0.13 -2.28 16 19 C 0.06 0.77 6.55 -3.84 -0.03 0.75 16 20 N -0.69 -9.04 6.87 -113.81 -0.78 -9.83 16 21 C 0.06 0.80 6.55 -3.83 -0.03 0.78 16 22 C -0.14 -2.27 5.10 -26.65 -0.14 -2.40 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 29 H 0.09 1.62 7.36 -51.93 -0.38 1.23 16 30 H 0.04 1.05 6.31 -51.93 -0.33 0.72 16 31 H 0.03 0.65 4.25 -51.93 -0.22 0.42 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 2.38 6.72 -51.93 -0.35 2.04 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.34 3.96 8.86 -39.29 -0.35 3.61 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.29 6.12 -51.92 -0.32 0.97 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -30.61 331.05 -7.04 -37.65 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.01 Total: 6.88 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.34 Total: 2.18 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.43 Total: -47.70 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.25 Total: -19.42 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.61 -7.04 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.417 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds