Wall clock time and date at job start Mon Mar 30 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00570 * 2 1 4 4 C 1.52992 * 109.47543 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47168 * 64.99562 * 4 3 2 6 6 C 1.46502 * 120.00337 * 270.00064 * 5 4 3 7 7 C 1.50702 * 109.47046 * 263.73491 * 6 5 4 8 8 H 1.08000 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99546 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99560 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00320 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46765 * 90.00198 * 11 9 7 13 13 H 1.48497 * 109.47411 * 210.00163 * 11 9 7 14 14 H 1.48498 * 109.47142 * 330.00552 * 11 9 7 15 15 C 1.34773 * 119.99993 * 90.00146 * 5 4 3 16 16 O 1.21290 * 119.99921 * 4.81441 * 15 5 4 17 17 C 1.50698 * 120.00389 * 184.81523 * 15 5 4 18 18 C 1.53116 * 109.52470 * 195.71710 * 17 15 5 19 19 C 1.53044 * 109.27701 * 182.44303 * 18 17 15 20 20 N 1.46837 * 109.52710 * 59.18165 * 19 18 17 21 21 C 1.46853 * 111.19465 * 298.26011 * 20 19 18 22 22 C 1.53037 * 109.52491 * 61.73995 * 21 20 19 23 23 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46864 * 300.00164 * 1 2 3 25 25 H 1.08997 * 109.46900 * 59.99924 * 1 2 3 26 26 H 1.08997 * 109.46802 * 59.99356 * 3 2 1 27 27 H 1.09006 * 109.46418 * 300.00050 * 3 2 1 28 28 H 1.09004 * 109.47200 * 304.99874 * 4 3 2 29 29 H 1.09000 * 109.47130 * 184.99624 * 4 3 2 30 30 H 1.09003 * 109.46562 * 23.73472 * 6 5 4 31 31 H 1.09001 * 109.46905 * 143.73239 * 6 5 4 32 32 H 0.97002 * 119.99784 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.57355 * 315.88098 * 17 15 5 34 34 H 1.08997 * 109.50311 * 62.50590 * 18 17 15 35 35 H 1.08999 * 109.50679 * 302.37898 * 18 17 15 36 36 H 1.09002 * 109.46194 * 299.15962 * 19 18 17 37 37 H 1.09002 * 109.46076 * 179.20296 * 19 18 17 38 38 H 1.00902 * 111.00171 * 62.35204 * 20 19 18 39 39 H 1.09002 * 109.45887 * 181.75756 * 21 20 19 40 40 H 1.09000 * 109.46278 * 301.71800 * 21 20 19 41 41 H 1.09007 * 109.49991 * 180.87718 * 22 21 20 42 42 H 1.09001 * 109.50050 * 60.76551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1063 -0.8928 -1.3402 7 6 5.5396 -1.2858 -1.0911 8 1 6.2801 -0.5265 -0.8871 9 6 5.9056 -2.6147 -1.1237 10 7 7.1567 -2.9576 -0.9069 11 14 4.6248 -3.9279 -1.4759 12 1 4.5523 -4.1688 -2.9395 13 1 5.0036 -5.1867 -0.7852 14 1 3.3002 -3.4722 -0.9831 15 6 4.2634 1.3326 -2.3200 16 8 4.2408 2.5413 -2.2213 17 6 4.6121 0.6907 -3.6381 18 6 5.2639 1.7283 -4.5561 19 6 5.5600 1.0868 -5.9137 20 7 4.3098 0.5975 -6.5084 21 6 3.6899 -0.4344 -5.6673 22 6 3.3380 0.1617 -4.3025 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0901 30 1 3.4659 -1.3610 -0.5926 31 1 3.8062 -1.2239 -2.3344 32 1 7.4141 -3.8926 -0.9294 33 1 5.3049 -0.1340 -3.4706 34 1 6.1942 2.0774 -4.1079 35 1 4.5860 2.5710 -4.6920 36 1 6.2489 0.2529 -5.7788 37 1 6.0113 1.8270 -6.5744 38 1 3.6689 1.3578 -6.6794 39 1 2.7828 -0.7990 -6.1492 40 1 4.3874 -1.2613 -5.5336 41 1 2.8921 -0.6085 -3.6730 42 1 2.6297 0.9797 -4.4344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:01 Heat of formation + Delta-G solvation = -110.465026 kcal Electronic energy + Delta-G solvation = -22491.463008 eV Core-core repulsion = 19277.231816 eV Total energy + Delta-G solvation = -3214.231192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40318 -39.23240 -38.51545 -36.74902 -34.61252 -33.23629 -31.83463 -31.27736 -29.36287 -27.22267 -25.72072 -24.42100 -23.92096 -23.50284 -21.52353 -19.90107 -19.10239 -18.16926 -17.64117 -17.12914 -16.86267 -16.64623 -16.08009 -15.84529 -15.65060 -15.50534 -15.33748 -14.80554 -14.38988 -13.94612 -13.86142 -13.72554 -13.41629 -13.16592 -13.07205 -12.91505 -12.80079 -12.61573 -12.50087 -12.16582 -12.04455 -11.95739 -11.69841 -11.59592 -11.39506 -10.82876 -10.76835 -10.57621 -9.45462 -9.34095 -8.31053 -6.37814 1.38198 1.40748 1.51709 1.67786 2.24474 2.34211 2.87179 3.03388 3.36846 3.63389 3.79454 3.85586 4.08351 4.12113 4.16481 4.32402 4.36746 4.41833 4.50311 4.51670 4.54867 4.60189 4.65674 4.72669 4.82184 4.82292 4.88423 4.92710 4.95747 5.02761 5.10192 5.17508 5.31464 5.46453 5.67868 6.02692 6.16908 6.24376 6.52428 6.59065 6.68093 7.21740 7.32289 8.85287 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.009425 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.392740 B = 2969.956714 C = 4239.995711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.060 3.940 4 C 0.110 3.890 5 N -0.589 5.589 6 C 0.227 3.773 7 C -0.541 4.541 8 H 0.026 0.974 9 C 0.022 3.978 10 N -0.941 5.941 11 Si 0.936 3.064 12 H -0.256 1.256 13 H -0.285 1.285 14 H -0.242 1.242 15 C 0.518 3.482 16 O -0.596 6.596 17 C -0.107 4.107 18 C -0.127 4.127 19 C 0.064 3.936 20 N -0.680 5.680 21 C 0.062 3.938 22 C -0.136 4.136 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.349 0.651 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 5.168 -5.798 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.105 3.895 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.177 4.177 10 N -0.581 5.581 11 Si 0.758 3.242 12 H -0.180 1.180 13 H -0.210 1.210 14 H -0.165 1.165 15 C 0.308 3.692 16 O -0.479 6.479 17 C -0.128 4.128 18 C -0.167 4.167 19 C -0.066 4.066 20 N -0.309 5.309 21 C -0.068 4.068 22 C -0.176 4.176 23 H 0.111 0.889 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.167 0.833 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.967 4.994 -6.136 15.190 hybrid contribution -0.170 0.070 1.330 1.343 sum -13.137 5.064 -4.806 14.877 Atomic orbital electron populations 1.22903 0.79730 1.03590 1.00726 1.87951 1.21350 1.28084 1.95518 1.22870 0.92899 0.84896 1.01041 1.21542 0.93340 0.99454 0.86990 1.47900 1.64192 1.08391 1.11293 1.19614 0.94952 0.76668 0.98292 1.21543 0.94113 0.92827 1.49497 0.95608 1.25745 0.97243 1.00792 0.93951 1.70055 1.18995 1.18476 1.50566 0.85880 0.80340 0.78138 0.79855 1.17987 1.21027 1.16549 1.20964 0.75122 0.86430 0.86690 1.90543 1.55985 1.15394 1.85937 1.21329 1.00013 0.99739 0.91754 1.22014 1.00412 0.97362 0.96884 1.22011 0.92853 0.99545 0.92222 1.60703 1.07333 1.16416 1.46442 1.22034 1.00333 0.94766 0.89620 1.22204 0.95137 1.01132 0.99107 0.88854 0.92599 0.93748 0.89974 0.93897 0.90247 0.89356 0.93716 0.93822 0.92261 0.89655 0.92982 0.91345 0.91741 0.88490 0.83311 0.88094 0.91674 0.91161 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.81 9.65 -148.98 -1.44 -14.25 16 3 C 0.06 1.79 6.28 71.98 0.45 2.25 16 4 C 0.11 4.02 5.82 86.38 0.50 4.52 16 5 N -0.59 -24.77 2.44 -826.14 -2.01 -26.79 16 6 C 0.23 10.24 3.64 85.63 0.31 10.55 16 7 C -0.54 -29.79 9.13 25.60 0.23 -29.56 16 8 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 9 C 0.02 1.20 5.47 84.65 0.46 1.66 16 10 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 11 Si 0.94 40.98 27.47 68.60 1.88 42.86 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 15 C 0.52 21.71 6.82 87.66 0.60 22.31 16 16 O -0.60 -26.74 15.51 -3.06 -0.05 -26.79 16 17 C -0.11 -3.92 1.75 -11.46 -0.02 -3.94 16 18 C -0.13 -4.06 4.83 30.65 0.15 -3.91 16 19 C 0.06 1.66 6.55 86.33 0.57 2.23 16 20 N -0.68 -16.16 6.87 -514.00 -3.53 -19.69 16 21 C 0.06 1.57 6.55 86.32 0.57 2.14 16 22 C -0.14 -4.03 5.10 30.65 0.16 -3.87 16 23 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.08 2.98 8.07 -2.39 -0.02 2.96 16 29 H 0.09 3.22 7.36 -2.39 -0.02 3.20 16 30 H 0.04 2.05 6.31 -2.39 -0.02 2.03 16 31 H 0.04 1.87 4.25 -2.39 -0.01 1.86 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.09 3.65 6.72 -2.39 -0.02 3.63 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.35 7.07 8.86 -89.69 -0.79 6.28 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.19 6.12 -2.38 -0.01 2.17 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.71 331.05 0.53 -67.17 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.15 Total: 27.74 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.22 Total: 6.20 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -5.24 Total: -102.95 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.48 Total: -41.03 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.86 kcal Total: -67.71 0.53 -67.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.291 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds