Wall clock time and date at job start Mon Mar 30 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46699 * 2 1 4 4 C 1.34233 * 117.00014 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99450 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00468 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.48732 * 31.64330 * 6 4 3 8 8 C 1.53054 * 109.48859 * 271.57996 * 6 4 3 9 9 N 1.46954 * 109.36678 * 181.63011 * 8 6 4 10 10 C 1.46960 * 110.88068 * 59.31581 * 9 8 6 11 11 C 1.53045 * 109.36809 * 300.68411 * 10 9 8 12 12 N 1.46955 * 109.49075 * 151.68975 * 6 4 3 13 13 C 1.46900 * 110.99827 * 303.15408 * 12 6 4 14 14 C 1.53002 * 109.47168 * 165.29900 * 13 12 6 15 15 C 1.52998 * 109.47406 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47163 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00021 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31523 * 120.00026 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00131 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47219 * 90.00453 * 20 18 16 22 22 H 1.48503 * 109.46999 * 210.00480 * 20 18 16 23 23 H 1.48498 * 109.47059 * 330.00133 * 20 18 16 24 24 H 1.08998 * 109.47121 * 300.00276 * 1 2 3 25 25 H 1.09006 * 109.46870 * 60.00107 * 1 2 3 26 26 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47522 * 240.00388 * 2 1 3 28 28 H 1.08999 * 109.47227 * 119.99973 * 2 1 3 29 29 H 1.09000 * 109.48550 * 301.59666 * 8 6 4 30 30 H 1.08999 * 109.48690 * 61.66192 * 8 6 4 31 31 H 1.00901 * 110.99697 * 295.45625 * 9 8 6 32 32 H 1.09003 * 109.48181 * 60.64913 * 10 9 8 33 33 H 1.08994 * 109.49028 * 180.69056 * 10 9 8 34 34 H 1.09005 * 109.48940 * 298.43314 * 11 10 9 35 35 H 1.08999 * 109.49329 * 178.36603 * 11 10 9 36 36 H 1.08999 * 109.47220 * 45.29673 * 13 12 6 37 37 H 1.09001 * 109.47483 * 285.29466 * 13 12 6 38 38 H 1.08999 * 109.47235 * 59.99782 * 14 13 12 39 39 H 1.09007 * 109.46999 * 300.00055 * 14 13 12 40 40 H 1.08999 * 109.47320 * 59.99566 * 15 14 13 41 41 H 1.09007 * 109.46867 * 299.99868 * 15 14 13 42 42 H 0.96993 * 119.99863 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0012 7 1 3.2511 3.6077 0.5402 8 6 4.0796 3.4250 -1.4409 9 7 4.6776 4.7673 -1.4385 10 6 5.9918 4.7541 -0.7809 11 6 5.8329 4.2667 0.6611 12 7 5.2349 2.9242 0.6586 13 6 5.1354 2.3897 2.0233 14 6 6.5342 2.0478 2.5404 15 6 6.4306 1.4905 3.9615 16 6 7.8083 1.1532 4.4705 17 1 8.6715 1.3194 3.8430 18 6 7.9667 0.6316 5.7369 19 7 9.1692 0.3377 6.1814 20 14 6.4737 0.3436 6.8219 21 1 5.9518 -1.0275 6.5920 22 1 6.8617 0.4930 8.2476 23 1 5.4209 1.3364 6.4888 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.7274 2.7393 -1.9872 30 1 3.1021 3.4632 -1.9217 31 1 4.0616 5.4367 -1.0019 32 1 6.6612 4.0835 -1.3198 33 1 6.4086 5.7612 -0.7808 34 1 5.1852 4.9523 1.2075 35 1 6.8104 4.2284 1.1419 36 1 4.5204 1.4898 2.0171 37 1 4.6802 3.1365 2.6738 38 1 7.1493 2.9477 2.5466 39 1 6.9896 1.3010 1.8899 40 1 5.8157 0.5906 3.9549 41 1 5.9751 2.2370 4.6122 42 1 9.2806 -0.0289 7.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088665471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:17 Heat of formation + Delta-G solvation = -109.027703 kcal Electronic energy + Delta-G solvation = -21529.884669 eV Core-core repulsion = 18315.715804 eV Total energy + Delta-G solvation = -3214.168865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98754 -40.04444 -37.66945 -36.77030 -35.08029 -33.40603 -32.91949 -32.04462 -29.26244 -26.74998 -25.74163 -24.07561 -23.73141 -22.50639 -21.76911 -21.22734 -18.98934 -18.90208 -17.88402 -17.64748 -16.91073 -16.59895 -16.30992 -15.92040 -15.82939 -15.41862 -14.96522 -14.80987 -14.71727 -14.25682 -13.84706 -13.73061 -13.59991 -13.37454 -13.01046 -12.89303 -12.76416 -12.58032 -12.52568 -12.28110 -12.15187 -11.83874 -11.65544 -11.59921 -11.57449 -11.42118 -11.29699 -10.80743 -9.71210 -9.36085 -8.33310 -6.37840 1.03618 1.31060 1.32742 1.44817 1.45921 2.32083 2.60085 3.01292 3.22946 3.59942 3.70372 3.84025 3.93912 3.96705 4.01521 4.05417 4.17892 4.26923 4.31083 4.41646 4.52167 4.54307 4.66514 4.78789 4.80574 4.84100 4.87252 4.89912 5.01309 5.10278 5.12952 5.37886 5.40169 5.50524 5.60011 5.73076 5.80719 5.94222 6.24934 6.40304 6.68378 6.69588 7.26512 8.83779 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.005180 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.697721 B = 5404.095131 C = 6877.539120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.519 6.519 6 C 0.060 3.940 7 H 0.089 0.911 8 C 0.081 3.919 9 N -0.671 5.671 10 C 0.062 3.938 11 C 0.018 3.982 12 N -0.534 5.534 13 C 0.063 3.937 14 C -0.080 4.080 15 C -0.008 4.008 16 C -0.534 4.534 17 H 0.030 0.970 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.247 1.247 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.354 0.646 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.008 0.992 41 H 0.023 0.977 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 8.616 -15.633 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.406 6.406 6 C -0.051 4.051 7 H 0.107 0.893 8 C -0.050 4.050 9 N -0.299 5.299 10 C -0.067 4.067 11 C -0.111 4.111 12 N -0.261 5.261 13 C -0.064 4.064 14 C -0.118 4.118 15 C -0.045 4.045 16 C -0.572 4.572 17 H 0.049 0.951 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.170 1.170 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.041 0.959 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.297 7.891 -16.434 26.546 hybrid contribution -0.446 -0.550 2.331 2.436 sum -19.743 7.341 -14.103 25.349 Atomic orbital electron populations 1.21814 0.89826 1.04421 1.03937 1.23302 0.97422 0.79186 1.02290 1.86490 1.23523 1.33738 1.83757 1.23782 0.80819 0.92686 0.72054 1.90716 1.61129 1.43867 1.44868 1.22245 0.90963 0.90110 1.01813 0.89308 1.22065 1.02077 0.91084 0.89762 1.60797 1.05208 1.06134 1.57782 1.22173 0.91746 1.02820 0.90008 1.23046 1.00703 0.86993 1.00329 1.61880 1.20771 1.24997 1.18410 1.22124 0.97963 0.98560 0.87771 1.21184 0.95257 0.99886 0.95508 1.19466 0.95049 0.95737 0.94296 1.21444 0.93315 1.42186 1.00206 0.95130 1.26030 0.99190 0.94496 0.99485 1.70069 1.24205 1.45597 1.19203 0.85642 0.79698 0.79643 0.77570 1.19453 1.20344 1.17023 0.91416 0.90492 0.88330 0.91069 0.92445 0.90945 0.86946 0.82636 0.91019 0.87259 0.93078 0.89994 0.92726 0.93788 0.92500 0.94223 0.97316 0.95866 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.29 71.98 0.74 -1.03 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.36 -8.40 10.22 -51.44 -0.53 -8.92 16 4 C 0.46 13.02 5.87 71.23 0.42 13.44 16 5 O -0.52 -18.87 15.27 21.96 0.34 -18.54 16 6 C 0.06 1.40 2.46 44.18 0.11 1.51 16 7 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 8 C 0.08 1.49 5.99 86.31 0.52 2.01 16 9 N -0.67 -10.67 6.91 -513.44 -3.55 -14.22 16 10 C 0.06 1.13 6.72 86.31 0.58 1.71 16 11 C 0.02 0.41 5.43 86.31 0.47 0.87 16 12 N -0.53 -15.42 4.23 -874.88 -3.70 -19.12 16 13 C 0.06 2.20 4.63 86.30 0.40 2.60 16 14 C -0.08 -3.45 5.18 30.59 0.16 -3.29 16 15 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 16 C -0.53 -32.45 9.66 25.60 0.25 -32.20 16 17 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 18 C 0.00 0.29 5.47 84.65 0.46 0.75 16 19 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 20 Si 0.95 45.77 27.47 68.60 1.88 47.66 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.35 4.15 8.89 -89.69 -0.80 3.36 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 2.15 6.54 -2.39 -0.02 2.13 16 36 H 0.05 2.06 5.91 -2.39 -0.01 2.05 16 37 H 0.04 1.40 8.07 -2.39 -0.02 1.38 16 38 H 0.06 2.36 6.66 -2.39 -0.02 2.35 16 39 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 41 H 0.02 1.11 7.20 -2.38 -0.02 1.09 16 42 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -74.76 335.56 -0.45 -75.21 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.14 Total: 11.46 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.67 Total: -12.41 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -6.95 Total: -94.44 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.19 Total: -27.46 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.66 kcal Total: -74.76 -0.45 -75.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088665471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.822 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds