Wall clock time and date at job start Mon Mar 30 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99683 * 2 1 4 4 C 1.50697 * 109.47102 * 293.95083 * 3 2 1 5 5 O 1.21275 * 120.00289 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00595 * 359.97438 * 6 4 3 8 8 C 1.46506 * 119.99776 * 180.02562 * 6 4 3 9 9 C 1.50699 * 109.47288 * 89.99933 * 8 6 4 10 10 H 1.07998 * 119.99916 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00181 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99933 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47498 * 89.99664 * 13 11 9 15 15 H 1.48508 * 109.47098 * 209.99558 * 13 11 9 16 16 H 1.48501 * 109.47153 * 329.99347 * 13 11 9 17 17 C 1.46900 * 110.99925 * 123.95343 * 2 1 3 18 18 C 1.52994 * 109.47402 * 66.04469 * 17 2 1 19 19 C 1.53782 * 113.61734 * 184.99959 * 18 17 2 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 18 17 21 21 O 1.42905 * 113.61505 * 270.80084 * 20 19 18 22 22 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 23 23 H 1.08993 * 109.47562 * 296.04480 * 1 2 3 24 24 H 1.09004 * 109.46892 * 56.05257 * 1 2 3 25 25 H 1.09003 * 109.46829 * 176.04559 * 1 2 3 26 26 H 1.08998 * 109.47254 * 53.95317 * 3 2 1 27 27 H 1.09002 * 109.46816 * 173.95154 * 3 2 1 28 28 H 1.09004 * 109.47220 * 89.99655 * 7 6 4 29 29 H 1.08989 * 109.47594 * 210.00224 * 7 6 4 30 30 H 1.09007 * 109.46790 * 330.00578 * 7 6 4 31 31 H 1.09002 * 109.46994 * 209.99469 * 8 6 4 32 32 H 1.09001 * 109.47184 * 329.99743 * 8 6 4 33 33 H 0.96997 * 120.00046 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.46682 * 306.05073 * 17 2 1 35 35 H 1.08998 * 109.47034 * 186.05119 * 17 2 1 36 36 H 1.09002 * 112.84929 * 316.20035 * 18 17 2 37 37 H 1.09001 * 113.61250 * 105.47049 * 19 18 17 38 38 H 1.08997 * 113.61225 * 334.56890 * 19 18 17 39 39 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 40 40 H 0.96696 * 114.00145 * 178.47219 * 21 20 19 41 41 H 1.08993 * 113.61491 * 89.15923 * 22 20 19 42 42 H 1.09000 * 113.61138 * 220.06261 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0048 1.4456 -2.1407 6 7 2.0188 3.3198 -1.5237 7 6 2.7820 4.0467 -0.5061 8 6 1.6698 3.9769 -2.7858 9 6 0.3385 4.6679 -2.6410 10 1 -0.1942 4.6227 -1.7027 11 6 -0.1995 5.3580 -3.7066 12 7 0.4494 5.4136 -4.8491 13 14 -1.8494 6.2152 -3.5269 14 1 -1.6355 7.6065 -3.0540 15 1 -2.5402 6.2398 -4.8413 16 1 -2.6842 5.4807 -2.5426 17 6 1.9955 -0.7660 1.1376 18 6 1.6315 -2.2426 0.9704 19 6 2.0318 -3.1155 2.1715 20 6 2.4516 -4.1877 1.1521 21 8 1.3956 -5.0814 0.7937 22 6 2.6572 -3.0424 0.1466 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5610 1.9273 0.8309 27 1 3.0797 1.3444 0.1083 28 1 3.8481 3.8900 -0.6706 29 1 2.5564 5.1108 -0.5739 30 1 2.5093 3.6798 0.4835 31 1 2.4351 4.7114 -3.0367 32 1 1.6079 3.2313 -3.5786 33 1 0.0711 5.8993 -5.5986 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 0.6011 -2.3905 0.6472 37 1 1.1889 -3.4126 2.7956 38 1 2.8641 -2.7109 2.7473 39 1 3.3729 -4.7060 1.4180 40 1 1.6472 -5.7435 0.1354 41 1 3.6608 -2.6177 0.1678 42 1 2.3184 -3.2805 -0.8616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091462933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:40 Heat of formation + Delta-G solvation = -49.139439 kcal Electronic energy + Delta-G solvation = -21105.745888 eV Core-core repulsion = 17894.173973 eV Total energy + Delta-G solvation = -3211.571915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82766 -38.98970 -36.61079 -34.85743 -34.45113 -32.58967 -29.20972 -27.87977 -27.21399 -25.86262 -25.64485 -24.22639 -22.47346 -21.08985 -19.71584 -18.33178 -17.22007 -16.54366 -16.46064 -15.76824 -15.54514 -15.23275 -14.93970 -14.52413 -14.31497 -14.06326 -13.50974 -13.14246 -12.82638 -12.54824 -12.37453 -12.28319 -12.14246 -11.82793 -11.75475 -11.52188 -11.20599 -11.17345 -10.95776 -10.81873 -10.77579 -10.54207 -10.27943 -10.12302 -9.83192 -9.59797 -8.81135 -8.41924 -8.04331 -7.58059 -6.02417 -4.07235 3.30734 3.37397 3.40995 3.51431 3.69858 3.84674 4.25440 4.46360 4.52311 4.56024 4.66889 4.84373 5.15420 5.20958 5.31890 5.38366 5.45421 5.48185 5.51288 5.54791 5.63202 5.68563 5.71048 5.82105 5.83265 5.95878 5.97606 6.09798 6.21494 6.29020 6.51557 7.00214 7.18741 7.26906 7.41267 7.49026 7.59358 7.94552 8.26058 8.48034 8.93285 9.18672 9.57983 11.05584 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.003512 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.325500 B = 7970.737296 C = 8246.381754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.521 5.521 3 C 0.037 3.963 4 C 0.505 3.495 5 O -0.523 6.523 6 N -0.606 5.606 7 C 0.084 3.916 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.064 3.936 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.074 3.926 21 O -0.553 6.553 22 C -0.156 4.156 23 H 0.016 0.984 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.086 0.914 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 -14.205 14.749 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.244 5.244 3 C -0.094 4.094 4 C 0.291 3.709 5 O -0.399 6.399 6 N -0.340 5.340 7 C -0.060 4.060 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.064 4.064 18 C -0.115 4.115 19 C -0.168 4.168 20 C 0.015 3.985 21 O -0.359 6.359 22 C -0.194 4.194 23 H 0.034 0.966 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.227 0.773 41 H 0.105 0.895 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.564 -14.294 14.091 21.118 hybrid contribution -0.771 0.783 0.451 1.188 sum 5.793 -13.511 14.542 20.678 Atomic orbital electron populations 1.22601 0.86552 1.02422 1.01397 1.61604 1.08888 1.11918 1.42023 1.22047 1.01053 0.89661 0.96614 1.20145 0.80508 0.81867 0.88392 1.90632 1.39017 1.63911 1.46369 1.48170 1.53998 1.12058 1.19762 1.21618 0.94900 0.98530 0.90966 1.19262 0.95443 0.92605 0.79966 1.21438 1.04722 1.32039 0.98260 0.92580 1.24939 0.97691 0.96486 0.95023 1.69933 1.38701 1.42363 1.02385 0.86503 0.83831 0.79577 0.77537 1.20681 1.21064 1.19927 1.22177 0.99694 0.93161 0.91375 1.22510 1.00430 0.92643 0.95911 1.23078 1.02007 0.95242 0.96474 1.22745 0.89541 0.89532 0.96678 1.86454 1.38314 1.47247 1.63847 1.23616 0.99790 0.96794 0.99190 0.96579 0.88791 0.91593 0.92711 0.88838 0.93792 0.90809 0.92743 0.95104 0.93808 0.92729 0.94987 0.90906 0.88496 0.90780 0.88949 0.91849 0.77264 0.89506 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.01 60.07 0.54 0.83 16 2 N -0.52 -7.99 4.50 -244.37 -1.10 -9.09 16 3 C 0.04 0.58 4.00 -4.98 -0.02 0.56 16 4 C 0.51 10.72 7.37 -10.99 -0.08 10.64 16 5 O -0.52 -13.38 13.91 5.56 0.08 -13.30 16 6 N -0.61 -13.06 2.86 -182.95 -0.52 -13.58 16 7 C 0.08 1.33 10.24 59.85 0.61 1.95 16 8 C 0.25 6.55 5.16 -5.19 -0.03 6.53 16 9 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.06 0.74 4.80 -3.83 -0.02 0.72 16 18 C -0.10 -1.05 3.64 -89.71 -0.33 -1.38 16 19 C -0.13 -1.16 7.48 -25.92 -0.19 -1.35 16 20 C 0.07 0.65 5.27 -25.92 -0.14 0.52 16 21 O -0.55 -5.36 13.59 -35.23 -0.48 -5.84 16 22 C -0.16 -1.57 7.48 -25.82 -0.19 -1.76 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 1.85 5.82 -51.93 -0.30 1.55 16 25 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 26 H 0.06 0.78 7.38 -51.93 -0.38 0.39 16 27 H 0.09 1.23 7.90 -51.93 -0.41 0.82 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.07 -51.94 -0.42 0.79 16 30 H 0.05 0.70 6.44 -51.92 -0.33 0.37 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.75 7.64 -51.93 -0.40 0.35 16 36 H 0.10 1.24 6.26 -51.93 -0.33 0.91 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.38 2.06 9.12 45.56 0.42 2.48 16 41 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -34.61 339.65 -7.65 -42.26 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.20 Total: 0.05 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.26 Total: 3.49 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.89 Total: -48.82 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.40 Total: -19.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.61 -7.65 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091462933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.876 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds