Wall clock time and date at job start Mon Mar 30 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99683 * 2 1 4 4 C 1.50697 * 109.47102 * 293.95083 * 3 2 1 5 5 O 1.21275 * 120.00289 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00595 * 359.97438 * 6 4 3 8 8 C 1.46506 * 119.99776 * 180.02562 * 6 4 3 9 9 C 1.50699 * 109.47288 * 89.99933 * 8 6 4 10 10 H 1.07998 * 119.99916 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00181 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99933 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99964 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47498 * 89.99664 * 13 11 9 15 15 H 1.48508 * 109.47098 * 209.99558 * 13 11 9 16 16 H 1.48501 * 109.47153 * 329.99347 * 13 11 9 17 17 C 1.46900 * 110.99925 * 123.95343 * 2 1 3 18 18 C 1.52994 * 109.47402 * 66.04469 * 17 2 1 19 19 C 1.53782 * 113.61734 * 184.99959 * 18 17 2 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 18 17 21 21 O 1.42905 * 113.61505 * 270.80084 * 20 19 18 22 22 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 23 23 H 1.08993 * 109.47562 * 296.04480 * 1 2 3 24 24 H 1.09004 * 109.46892 * 56.05257 * 1 2 3 25 25 H 1.09003 * 109.46829 * 176.04559 * 1 2 3 26 26 H 1.08998 * 109.47254 * 53.95317 * 3 2 1 27 27 H 1.09002 * 109.46816 * 173.95154 * 3 2 1 28 28 H 1.09004 * 109.47220 * 89.99655 * 7 6 4 29 29 H 1.08989 * 109.47594 * 210.00224 * 7 6 4 30 30 H 1.09007 * 109.46790 * 330.00578 * 7 6 4 31 31 H 1.09002 * 109.46994 * 209.99469 * 8 6 4 32 32 H 1.09001 * 109.47184 * 329.99743 * 8 6 4 33 33 H 0.96997 * 120.00046 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.46682 * 306.05073 * 17 2 1 35 35 H 1.08998 * 109.47034 * 186.05119 * 17 2 1 36 36 H 1.09002 * 112.84929 * 316.20035 * 18 17 2 37 37 H 1.09001 * 113.61250 * 105.47049 * 19 18 17 38 38 H 1.08997 * 113.61225 * 334.56890 * 19 18 17 39 39 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 40 40 H 0.96696 * 114.00145 * 178.47219 * 21 20 19 41 41 H 1.08993 * 113.61491 * 89.15923 * 22 20 19 42 42 H 1.09000 * 113.61138 * 220.06261 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0048 1.4456 -2.1407 6 7 2.0188 3.3198 -1.5237 7 6 2.7820 4.0467 -0.5061 8 6 1.6698 3.9769 -2.7858 9 6 0.3385 4.6679 -2.6410 10 1 -0.1942 4.6227 -1.7027 11 6 -0.1995 5.3580 -3.7066 12 7 0.4494 5.4136 -4.8491 13 14 -1.8494 6.2152 -3.5269 14 1 -1.6355 7.6065 -3.0540 15 1 -2.5402 6.2398 -4.8413 16 1 -2.6842 5.4807 -2.5426 17 6 1.9955 -0.7660 1.1376 18 6 1.6315 -2.2426 0.9704 19 6 2.0318 -3.1155 2.1715 20 6 2.4516 -4.1877 1.1521 21 8 1.3956 -5.0814 0.7937 22 6 2.6572 -3.0424 0.1466 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5610 1.9273 0.8309 27 1 3.0797 1.3444 0.1083 28 1 3.8481 3.8900 -0.6706 29 1 2.5564 5.1108 -0.5739 30 1 2.5093 3.6798 0.4835 31 1 2.4351 4.7114 -3.0367 32 1 1.6079 3.2313 -3.5786 33 1 0.0711 5.8993 -5.5986 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 0.6011 -2.3905 0.6472 37 1 1.1889 -3.4126 2.7956 38 1 2.8641 -2.7109 2.7473 39 1 3.3729 -4.7060 1.4180 40 1 1.6472 -5.7435 0.1354 41 1 3.6608 -2.6177 0.1678 42 1 2.3184 -3.2805 -0.8616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091462933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:40 Heat of formation + Delta-G solvation = -76.455132 kcal Electronic energy + Delta-G solvation = -21106.930385 eV Core-core repulsion = 17894.173973 eV Total energy + Delta-G solvation = -3212.756412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91430 -40.26322 -37.77031 -36.45996 -35.44256 -34.71882 -30.76599 -29.15222 -28.64224 -27.20962 -26.57714 -25.63449 -24.10788 -22.14490 -20.49358 -19.90260 -18.69832 -18.08202 -17.80304 -17.14493 -16.80620 -16.54914 -16.19502 -15.88993 -15.64916 -15.36818 -14.70053 -14.40874 -14.18273 -13.83704 -13.74000 -13.43739 -13.39917 -13.20510 -13.11813 -12.87347 -12.72213 -12.65186 -12.52447 -12.37628 -12.18234 -11.73032 -11.69435 -11.67720 -11.02486 -10.64931 -10.61295 -10.39325 -9.37459 -9.19322 -8.22745 -6.38045 1.35025 1.38385 1.48564 1.89669 2.26416 2.41226 3.03469 3.06363 3.25365 3.74298 3.79797 3.81869 3.88673 4.06600 4.23909 4.32023 4.43478 4.49191 4.50969 4.60995 4.67020 4.74025 4.76809 4.86074 4.89844 4.96815 4.97467 5.02025 5.14589 5.18849 5.23671 5.34565 5.54325 5.56865 5.84929 5.97749 6.06672 6.18945 6.70558 6.84555 6.91310 7.28735 7.56530 8.84122 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.003512 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.325500 B = 7970.737296 C = 8246.381754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.053 3.947 4 C 0.493 3.507 5 O -0.580 6.580 6 N -0.615 5.615 7 C 0.079 3.921 8 C 0.261 3.739 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.274 1.274 17 C 0.068 3.932 18 C -0.105 4.105 19 C -0.121 4.121 20 C 0.077 3.923 21 O -0.576 6.576 22 C -0.158 4.158 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.023 0.977 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.396 0.604 41 H 0.100 0.900 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.029 -14.250 17.672 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.078 4.078 4 C 0.281 3.719 5 O -0.460 6.460 6 N -0.347 5.347 7 C -0.063 4.063 8 C 0.139 3.861 9 C -0.581 4.581 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.199 1.199 17 C -0.059 4.059 18 C -0.124 4.124 19 C -0.159 4.159 20 C 0.018 3.982 21 O -0.384 6.384 22 C -0.196 4.196 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.246 0.754 41 H 0.118 0.882 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.548 -14.340 17.059 23.529 hybrid contribution -1.027 0.744 -0.493 1.361 sum 6.521 -13.597 16.566 22.402 Atomic orbital electron populations 1.22394 0.87631 1.02083 1.00031 1.61534 1.08241 1.12233 1.44632 1.21981 1.03132 0.89516 0.93161 1.21289 0.79205 0.81441 0.89944 1.90609 1.41438 1.65228 1.48753 1.48210 1.54546 1.12757 1.19220 1.21927 0.95779 0.97587 0.91043 1.18705 0.94760 0.90975 0.81615 1.21706 1.05689 1.32425 0.98290 0.93000 1.25880 1.01649 0.97161 0.94572 1.70054 1.40545 1.43092 1.03182 0.85404 0.78751 0.79018 0.77560 1.18664 1.20617 1.19855 1.22266 1.00815 0.92540 0.90239 1.22492 0.99271 0.92962 0.97634 1.23099 1.02577 0.94470 0.95725 1.22816 0.90164 0.89393 0.95855 1.86412 1.39456 1.47960 1.64602 1.23652 1.00036 0.97654 0.98221 0.95080 0.93271 0.91051 0.90319 0.85342 0.90958 0.91691 0.88927 0.95931 0.98695 0.92391 0.93643 0.88699 0.91135 0.91471 0.86386 0.89378 0.75443 0.88207 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.01 127.69 1.15 2.01 16 2 N -0.54 -15.84 4.50 -927.05 -4.17 -20.01 16 3 C 0.05 1.50 4.00 85.56 0.34 1.85 16 4 C 0.49 21.01 7.37 87.66 0.65 21.66 16 5 O -0.58 -31.17 13.91 -3.01 -0.04 -31.21 16 6 N -0.61 -26.52 2.86 -851.13 -2.43 -28.95 16 7 C 0.08 2.31 10.24 127.77 1.31 3.62 16 8 C 0.26 14.45 5.16 85.63 0.44 14.90 16 9 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 13 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 17 C 0.07 1.36 4.80 86.30 0.41 1.78 16 18 C -0.10 -2.12 3.64 -10.21 -0.04 -2.15 16 19 C -0.12 -1.81 7.48 31.12 0.23 -1.58 16 20 C 0.08 1.17 5.27 31.12 0.16 1.34 16 21 O -0.58 -10.50 13.59 -148.98 -2.02 -12.53 16 22 C -0.16 -2.92 7.48 31.18 0.23 -2.69 16 23 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 25 H 0.07 2.14 6.29 -2.39 -0.01 2.13 16 26 H 0.08 1.91 7.38 -2.39 -0.02 1.89 16 27 H 0.13 2.79 7.90 -2.39 -0.02 2.77 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 30 H 0.09 2.01 6.44 -2.38 -0.02 1.99 16 31 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 32 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 35 H 0.09 1.50 7.64 -2.39 -0.02 1.48 16 36 H 0.07 1.80 6.26 -2.39 -0.01 1.78 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.17 8.10 -2.39 -0.02 1.15 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.40 3.92 9.12 -74.06 -0.68 3.24 16 41 H 0.10 1.57 7.90 -2.39 -0.02 1.55 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.77 339.65 -0.43 -80.20 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.33 Total: 11.95 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.60 Total: 9.83 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -6.32 Total: -105.92 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.07 Total: -43.73 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.77 -0.43 -80.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091462933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.745 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds