Wall clock time and date at job start Mon Mar 30 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99962 * 2 1 4 4 C 1.52999 * 109.47277 * 175.15543 * 3 2 1 5 5 N 1.46503 * 109.46663 * 65.47944 * 4 3 2 6 6 C 1.46505 * 119.99496 * 84.67370 * 5 4 3 7 7 C 1.50704 * 109.47151 * 89.99960 * 6 5 4 8 8 H 1.08001 * 119.99529 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99997 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99961 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00063 * 359.97438 * 9 7 6 12 12 H 1.48509 * 109.47221 * 269.99832 * 11 9 7 13 13 H 1.48498 * 109.47460 * 29.99986 * 11 9 7 14 14 H 1.48498 * 109.47493 * 150.00252 * 11 9 7 15 15 C 1.34774 * 120.00516 * 264.67346 * 5 4 3 16 16 O 1.21281 * 119.99755 * 5.04250 * 15 5 4 17 17 C 1.50695 * 120.00052 * 185.04671 * 15 5 4 18 18 H 1.08999 * 110.01824 * 325.58399 * 17 15 5 19 19 C 1.53877 * 110.03477 * 86.97778 * 17 15 5 20 20 C 1.54267 * 106.59944 * 119.28267 * 19 17 15 21 21 C 1.54896 * 104.19260 * 23.61219 * 20 19 17 22 22 H 1.09001 * 110.76007 * 80.55997 * 21 20 19 23 23 N 1.46900 * 110.75438 * 203.74176 * 21 20 19 24 24 C 1.54267 * 110.03007 * 204.19707 * 17 15 5 25 25 H 1.09004 * 109.47313 * 300.00024 * 1 2 3 26 26 H 1.09003 * 109.47274 * 60.00313 * 1 2 3 27 27 H 1.09001 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47023 * 55.15779 * 3 2 1 29 29 H 1.08999 * 109.47209 * 295.16035 * 3 2 1 30 30 H 1.09001 * 109.47355 * 305.48970 * 4 3 2 31 31 H 1.08994 * 109.47439 * 185.48347 * 4 3 2 32 32 H 1.08994 * 109.47433 * 329.99956 * 6 5 4 33 33 H 1.09004 * 109.47006 * 209.99638 * 6 5 4 34 34 H 0.96995 * 120.00233 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.03120 * 238.56800 * 19 17 15 36 36 H 1.09001 * 110.03213 * 359.95013 * 19 17 15 37 37 H 1.09001 * 110.48732 * 142.28749 * 20 19 17 38 38 H 1.08998 * 110.48658 * 264.80678 * 20 19 17 39 39 H 1.00903 * 111.00171 * 298.54672 * 23 21 20 40 40 H 1.00901 * 111.00073 * 62.49871 * 23 21 20 41 41 H 1.08992 * 110.48894 * 335.77871 * 24 17 15 42 42 H 1.09001 * 110.48856 * 98.42866 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1868 0.1218 5 7 4.0670 0.5346 -1.0754 6 6 4.3587 1.3269 -2.2727 7 6 5.7806 1.8226 -2.2130 8 1 6.4045 1.5727 -1.3676 9 6 6.2847 2.5958 -3.2372 10 7 7.5258 3.0279 -3.1854 11 14 5.2053 3.0285 -4.6990 12 1 5.3507 1.9867 -5.7473 13 1 3.7872 3.0984 -4.2639 14 1 5.6199 4.3445 -5.2482 15 6 4.2921 -0.7942 -1.0754 16 8 3.9661 -1.4644 -0.1186 17 6 4.9489 -1.4472 -2.2641 18 1 4.6414 -0.9464 -3.1821 19 6 6.4797 -1.3883 -2.1190 20 6 6.9766 -2.8485 -2.0949 21 6 5.8592 -3.6419 -2.8168 22 1 5.9602 -3.5542 -3.8986 23 7 5.8746 -5.0526 -2.4072 24 6 4.5680 -2.9409 -2.3240 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6216 1.8762 0.8435 29 1 1.7589 1.8151 -0.9301 30 1 3.7796 0.5929 1.0013 31 1 3.9661 2.1812 0.2198 32 1 3.6791 2.1778 -2.3198 33 1 4.2269 0.7071 -3.1596 34 1 7.8803 3.5723 -3.9057 35 1 6.9151 -0.8597 -2.9669 36 1 6.7476 -0.8866 -1.1891 37 1 7.9190 -2.9398 -2.6350 38 1 7.0912 -3.1956 -1.0680 39 1 6.7499 -5.4907 -2.6523 40 1 5.6883 -5.1445 -1.4199 41 1 4.2911 -3.3039 -1.3343 42 1 3.7536 -3.0989 -3.0310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091543857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:54 Heat of formation + Delta-G solvation = -88.788557 kcal Electronic energy + Delta-G solvation = -22252.882566 eV Core-core repulsion = 19039.591336 eV Total energy + Delta-G solvation = -3213.291230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.66128 -37.78067 -36.90319 -34.98249 -32.66993 -32.35909 -30.06788 -28.40743 -27.58461 -26.47211 -25.75870 -22.82033 -22.46116 -20.40858 -20.09277 -17.90738 -17.04138 -16.67473 -16.21448 -16.04102 -15.58269 -15.32176 -14.81098 -14.47982 -14.23690 -13.99420 -13.36423 -12.97987 -12.84997 -12.51506 -12.35665 -12.10368 -11.85235 -11.75938 -11.47752 -11.16841 -10.99710 -10.93369 -10.73869 -10.68764 -10.60043 -10.30831 -10.26769 -10.03994 -9.59633 -9.40017 -8.85365 -8.68041 -8.50036 -7.67362 -6.22156 -4.22573 3.15950 3.24038 3.25987 3.50159 3.86515 4.12541 4.25746 4.67729 4.96164 5.08652 5.10571 5.32316 5.33805 5.40474 5.52440 5.57456 5.61013 5.70086 5.77025 5.81930 5.85328 5.89987 6.00198 6.09125 6.12251 6.23652 6.35756 6.44533 6.49785 6.65102 6.69201 6.85473 6.88939 7.28433 7.34353 7.45087 7.51928 7.56561 8.20035 8.45609 8.83609 9.09288 9.38333 10.90308 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.009273 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.325130 B = 3018.707373 C = 4949.745306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.590 5.590 6 C 0.208 3.792 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.891 5.891 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.266 1.266 14 H -0.284 1.284 15 C 0.529 3.471 16 O -0.556 6.556 17 C -0.106 4.106 18 H 0.092 0.908 19 C -0.090 4.090 20 C -0.158 4.158 21 C 0.086 3.914 22 H 0.086 0.914 23 N -0.844 5.844 24 C -0.105 4.105 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.337 0.663 40 H 0.340 0.660 41 H 0.085 0.915 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 -6.804 1.764 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.033 4.033 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.087 3.913 7 C -0.572 4.572 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.529 5.529 11 Si 0.694 3.306 12 H -0.198 1.198 13 H -0.190 1.190 14 H -0.210 1.210 15 C 0.318 3.682 16 O -0.435 6.435 17 C -0.128 4.128 18 H 0.111 0.889 19 C -0.128 4.128 20 C -0.198 4.198 21 C -0.026 4.026 22 H 0.104 0.896 23 N -0.371 5.371 24 C -0.143 4.143 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.104 0.896 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.839 -7.282 1.648 10.825 hybrid contribution 0.182 1.241 -0.369 1.307 sum -7.657 -6.041 1.279 9.836 Atomic orbital electron populations 1.22678 0.82499 1.02170 0.99185 1.88119 1.18232 1.27305 1.95170 1.23060 0.95440 0.85002 0.99815 1.21329 0.90088 0.99150 0.89700 1.47760 1.62491 1.07232 1.14545 1.19809 0.97407 0.91047 0.83075 1.21371 0.95580 1.32422 1.07826 0.90264 1.24850 0.94765 0.95226 0.97816 1.69887 1.14278 1.35495 1.33228 0.86986 0.81449 0.78551 0.83601 1.19840 1.19028 1.20982 1.20280 0.77486 0.81894 0.88557 1.90578 1.52818 1.62987 1.37093 1.21826 0.97074 0.95877 0.97977 0.88946 1.21783 0.92182 0.95090 1.03783 1.23206 0.98904 0.97378 1.00306 1.22484 0.94582 0.86284 0.99223 0.89596 1.58868 1.39812 1.15109 1.23335 1.22357 0.96503 0.92791 1.02639 0.94691 0.94721 0.90139 0.93193 0.93362 0.89862 0.88951 0.95263 0.95222 0.92448 0.90054 0.91462 0.91937 0.92121 0.85149 0.84713 0.89638 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.51 9.94 -35.51 -0.35 -6.86 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.21 5.83 -4.04 -0.02 2.18 16 5 N -0.59 -12.18 2.42 -175.06 -0.42 -12.60 16 6 C 0.21 4.54 4.02 -5.19 -0.02 4.52 16 7 C -0.53 -13.49 9.34 -34.44 -0.32 -13.81 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 11 Si 0.87 19.50 27.47 -169.99 -4.67 14.84 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.53 11.08 6.35 -10.99 -0.07 11.01 16 16 O -0.56 -12.65 14.62 5.28 0.08 -12.57 16 17 C -0.11 -1.97 2.67 -90.65 -0.24 -2.21 16 18 H 0.09 1.73 6.01 -51.93 -0.31 1.42 16 19 C -0.09 -1.65 5.85 -25.61 -0.15 -1.80 16 20 C -0.16 -2.38 6.51 -25.07 -0.16 -2.54 16 21 C 0.09 1.22 4.06 -65.67 -0.27 0.95 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 23 N -0.84 -10.46 9.39 -2.94 -0.03 -10.48 16 24 C -0.10 -1.72 5.96 -25.03 -0.15 -1.87 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.08 1.58 7.34 -51.93 -0.38 1.20 16 31 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 32 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16 33 H 0.03 0.64 5.37 -51.93 -0.28 0.36 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.39 7.67 -51.93 -0.40 0.99 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.34 3.50 9.07 -39.29 -0.36 3.15 16 40 H 0.34 4.11 8.86 -39.29 -0.35 3.76 16 41 H 0.09 1.54 6.66 -51.93 -0.35 1.19 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -29.91 335.86 -6.75 -36.66 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.03 Total: 9.56 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.16 Total: 0.82 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.32 Total: -47.50 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.28 Total: -19.43 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.67 Total: 14.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.91 -6.75 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.128 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds