Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99962 * 2 1 4 4 C 1.52999 * 109.47277 * 175.15543 * 3 2 1 5 5 N 1.46503 * 109.46663 * 65.47944 * 4 3 2 6 6 C 1.46505 * 119.99496 * 84.67370 * 5 4 3 7 7 C 1.50704 * 109.47151 * 89.99960 * 6 5 4 8 8 H 1.08001 * 119.99529 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99997 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99961 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00063 * 359.97438 * 9 7 6 12 12 H 1.48509 * 109.47221 * 269.99832 * 11 9 7 13 13 H 1.48498 * 109.47460 * 29.99986 * 11 9 7 14 14 H 1.48498 * 109.47493 * 150.00252 * 11 9 7 15 15 C 1.34774 * 120.00516 * 264.67346 * 5 4 3 16 16 O 1.21281 * 119.99755 * 5.04250 * 15 5 4 17 17 C 1.50695 * 120.00052 * 185.04671 * 15 5 4 18 18 H 1.08999 * 110.01824 * 325.58399 * 17 15 5 19 19 C 1.53877 * 110.03477 * 86.97778 * 17 15 5 20 20 C 1.54267 * 106.59944 * 119.28267 * 19 17 15 21 21 C 1.54896 * 104.19260 * 23.61219 * 20 19 17 22 22 H 1.09001 * 110.76007 * 80.55997 * 21 20 19 23 23 N 1.46900 * 110.75438 * 203.74176 * 21 20 19 24 24 C 1.54267 * 110.03007 * 204.19707 * 17 15 5 25 25 H 1.09004 * 109.47313 * 300.00024 * 1 2 3 26 26 H 1.09003 * 109.47274 * 60.00313 * 1 2 3 27 27 H 1.09001 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47023 * 55.15779 * 3 2 1 29 29 H 1.08999 * 109.47209 * 295.16035 * 3 2 1 30 30 H 1.09001 * 109.47355 * 305.48970 * 4 3 2 31 31 H 1.08994 * 109.47439 * 185.48347 * 4 3 2 32 32 H 1.08994 * 109.47433 * 329.99956 * 6 5 4 33 33 H 1.09004 * 109.47006 * 209.99638 * 6 5 4 34 34 H 0.96995 * 120.00233 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.03120 * 238.56800 * 19 17 15 36 36 H 1.09001 * 110.03213 * 359.95013 * 19 17 15 37 37 H 1.09001 * 110.48732 * 142.28749 * 20 19 17 38 38 H 1.08998 * 110.48658 * 264.80678 * 20 19 17 39 39 H 1.00903 * 111.00171 * 298.54672 * 23 21 20 40 40 H 1.00901 * 111.00073 * 62.49871 * 23 21 20 41 41 H 1.08992 * 110.48894 * 335.77871 * 24 17 15 42 42 H 1.09001 * 110.48856 * 98.42866 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5307 1.1868 0.1218 5 7 4.0670 0.5346 -1.0754 6 6 4.3587 1.3269 -2.2727 7 6 5.7806 1.8226 -2.2130 8 1 6.4045 1.5727 -1.3676 9 6 6.2847 2.5958 -3.2372 10 7 7.5258 3.0279 -3.1854 11 14 5.2053 3.0285 -4.6990 12 1 5.3507 1.9867 -5.7473 13 1 3.7872 3.0984 -4.2639 14 1 5.6199 4.3445 -5.2482 15 6 4.2921 -0.7942 -1.0754 16 8 3.9661 -1.4644 -0.1186 17 6 4.9489 -1.4472 -2.2641 18 1 4.6414 -0.9464 -3.1821 19 6 6.4797 -1.3883 -2.1190 20 6 6.9766 -2.8485 -2.0949 21 6 5.8592 -3.6419 -2.8168 22 1 5.9602 -3.5542 -3.8986 23 7 5.8746 -5.0526 -2.4072 24 6 4.5680 -2.9409 -2.3240 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6216 1.8762 0.8435 29 1 1.7589 1.8151 -0.9301 30 1 3.7796 0.5929 1.0013 31 1 3.9661 2.1812 0.2198 32 1 3.6791 2.1778 -2.3198 33 1 4.2269 0.7071 -3.1596 34 1 7.8803 3.5723 -3.9057 35 1 6.9151 -0.8597 -2.9669 36 1 6.7476 -0.8866 -1.1891 37 1 7.9190 -2.9398 -2.6350 38 1 7.0912 -3.1956 -1.0680 39 1 6.7499 -5.4907 -2.6523 40 1 5.6883 -5.1445 -1.4199 41 1 4.2911 -3.3039 -1.3343 42 1 3.7536 -3.0989 -3.0310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091543857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = -110.178256 kcal Electronic energy + Delta-G solvation = -22253.810093 eV Core-core repulsion = 19039.591336 eV Total energy + Delta-G solvation = -3214.218757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22858 -39.06146 -38.24450 -36.69126 -34.53622 -33.69171 -31.52943 -29.84237 -29.31238 -27.67885 -26.94649 -24.52220 -24.03114 -21.86387 -21.32565 -19.56117 -18.95197 -18.22703 -17.59251 -17.28618 -16.96289 -16.63709 -16.27895 -15.85713 -15.74025 -15.35965 -14.86542 -14.65382 -14.26511 -14.16335 -13.75809 -13.55282 -13.19742 -13.15378 -13.04340 -12.62064 -12.50930 -12.38038 -12.28508 -12.04520 -12.01748 -11.95995 -11.68979 -11.59512 -11.45162 -10.77296 -10.60541 -10.41641 -9.56146 -9.36581 -8.25459 -6.30816 1.40377 1.42502 1.50555 1.85733 2.30979 2.36502 2.95312 3.08206 3.50164 3.58732 3.74426 4.08122 4.10954 4.16119 4.26442 4.39219 4.42889 4.48545 4.51293 4.53638 4.54445 4.64634 4.68924 4.74378 4.77785 4.83358 4.87897 4.94719 4.99679 5.11925 5.29524 5.35588 5.42493 5.48085 5.75936 6.23829 6.25420 6.33566 6.64962 6.67716 6.76554 7.30939 7.46398 8.90350 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.009273 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.325130 B = 3018.707373 C = 4949.745306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.052 3.948 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.217 3.783 7 C -0.525 4.525 8 H 0.034 0.966 9 C 0.024 3.976 10 N -0.940 5.940 11 Si 0.931 3.069 12 H -0.263 1.263 13 H -0.242 1.242 14 H -0.287 1.287 15 C 0.523 3.477 16 O -0.578 6.578 17 C -0.106 4.106 18 H 0.093 0.907 19 C -0.085 4.085 20 C -0.150 4.150 21 C 0.098 3.902 22 H 0.097 0.903 23 N -0.840 5.840 24 C -0.098 4.098 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.351 0.649 40 H 0.343 0.657 41 H 0.069 0.931 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -7.472 0.504 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.095 3.905 7 C -0.564 4.564 8 H 0.053 0.947 9 C -0.175 4.175 10 N -0.580 5.580 11 Si 0.755 3.245 12 H -0.188 1.188 13 H -0.165 1.165 14 H -0.213 1.213 15 C 0.312 3.688 16 O -0.459 6.459 17 C -0.127 4.127 18 H 0.111 0.889 19 C -0.124 4.124 20 C -0.189 4.189 21 C -0.014 4.014 22 H 0.115 0.885 23 N -0.369 5.369 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.088 0.912 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.746 -7.964 0.405 12.592 hybrid contribution 0.807 1.442 0.147 1.659 sum -8.939 -6.522 0.552 11.079 Atomic orbital electron populations 1.22869 0.80209 1.03185 1.00656 1.88063 1.20840 1.28152 1.95475 1.22974 0.93315 0.85002 1.01292 1.21492 0.92349 0.98779 0.88312 1.47850 1.62430 1.07280 1.14930 1.19647 0.95210 0.91621 0.84032 1.21411 0.96814 1.31966 1.06211 0.94744 1.25654 0.95915 0.95097 1.00852 1.70042 1.16525 1.36916 1.34533 0.85955 0.80605 0.78129 0.79843 1.18817 1.16542 1.21319 1.20697 0.77153 0.81991 0.88975 1.90555 1.53805 1.63406 1.38086 1.21869 0.96655 0.97384 0.96840 0.88919 1.21672 0.92466 0.97096 1.01168 1.23176 1.00027 0.94849 1.00867 1.22349 0.92562 0.86944 0.99515 0.88538 1.58834 1.40822 1.13626 1.23645 1.22295 0.98002 0.91208 1.02150 0.92744 0.93618 0.89482 0.90173 0.92942 0.91268 0.88526 0.93925 0.94124 0.92456 0.91684 0.94829 0.90319 0.92137 0.83515 0.84401 0.91226 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.41 -13.70 9.94 -148.72 -1.48 -15.18 16 3 C 0.05 1.56 6.28 71.98 0.45 2.01 16 4 C 0.11 4.14 5.83 86.38 0.50 4.64 16 5 N -0.59 -24.64 2.42 -826.15 -2.00 -26.64 16 6 C 0.22 9.30 4.02 85.63 0.34 9.64 16 7 C -0.53 -27.09 9.34 25.60 0.24 -26.85 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.02 1.25 5.47 84.65 0.46 1.71 16 10 N -0.94 -54.49 13.96 21.45 0.30 -54.19 16 11 Si 0.93 39.27 27.47 68.60 1.88 41.15 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 14 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.52 22.11 6.35 87.66 0.56 22.67 16 16 O -0.58 -26.70 14.62 -2.77 -0.04 -26.74 16 17 C -0.11 -3.92 2.67 -10.82 -0.03 -3.95 16 18 H 0.09 3.40 6.01 -2.39 -0.01 3.38 16 19 C -0.09 -3.21 5.85 31.32 0.18 -3.02 16 20 C -0.15 -4.36 6.51 31.67 0.21 -4.16 16 21 C 0.10 2.60 4.06 46.24 0.19 2.79 16 22 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 23 N -0.84 -18.82 9.39 -163.22 -1.53 -20.36 16 24 C -0.10 -3.11 5.96 31.70 0.19 -2.92 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 30 H 0.07 2.69 7.34 -2.39 -0.02 2.67 16 31 H 0.10 3.35 8.11 -2.39 -0.02 3.33 16 32 H 0.04 1.74 7.12 -2.39 -0.02 1.73 16 33 H 0.04 1.68 5.37 -2.38 -0.01 1.67 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.03 1.45 7.67 -2.39 -0.02 1.44 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.35 6.32 9.07 -89.69 -0.81 5.51 16 40 H 0.34 7.61 8.86 -89.69 -0.79 6.82 16 41 H 0.07 2.46 6.66 -2.39 -0.02 2.44 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.62 335.86 1.03 -64.59 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.65 Total: 32.91 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.54 Total: 4.45 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -3.23 Total: -101.18 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.52 Total: -41.92 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.88 Total: 41.15 kcal Total: -65.62 1.03 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.587 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds