Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00166 * 2 1 4 4 C 1.52997 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47057 * 65.00261 * 4 3 2 6 6 C 1.46498 * 119.99825 * 269.99779 * 5 4 3 7 7 C 1.50702 * 109.47425 * 269.99938 * 6 5 4 8 8 H 1.08002 * 119.99777 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00104 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47089 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47071 * 119.99947 * 11 9 7 14 14 H 1.48497 * 109.47206 * 240.00218 * 11 9 7 15 15 C 1.34774 * 119.99963 * 90.00033 * 5 4 3 16 16 O 1.21586 * 120.00048 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99940 * 0.02562 * 15 5 4 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 5 19 19 C 1.54268 * 110.02813 * 272.63206 * 18 17 15 20 20 C 1.54971 * 104.15564 * 217.13629 * 19 18 17 21 21 C 1.54883 * 102.77798 * 37.88503 * 20 19 18 22 22 C 1.53871 * 110.03427 * 155.40981 * 18 17 15 23 23 H 1.09004 * 109.47557 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46925 * 299.99745 * 1 2 3 25 25 H 1.08997 * 109.47375 * 59.99522 * 1 2 3 26 26 H 1.09000 * 109.46753 * 60.00666 * 3 2 1 27 27 H 1.08998 * 109.47418 * 300.00224 * 3 2 1 28 28 H 1.09006 * 109.47180 * 305.00172 * 4 3 2 29 29 H 1.09004 * 109.47454 * 185.00246 * 4 3 2 30 30 H 1.09002 * 109.47489 * 30.00255 * 6 5 4 31 31 H 1.08996 * 109.47047 * 149.99967 * 6 5 4 32 32 H 0.96998 * 119.99439 * 180.02562 * 10 9 7 33 33 H 0.97005 * 120.00161 * 359.72198 * 17 15 5 34 34 H 1.08996 * 110.01294 * 34.01804 * 18 17 15 35 35 H 1.09004 * 110.48773 * 335.77712 * 19 18 17 36 36 H 1.08996 * 110.48996 * 98.42933 * 19 18 17 37 37 H 1.09002 * 110.71525 * 279.57326 * 20 19 18 38 38 H 1.08996 * 110.92520 * 156.29778 * 20 19 18 39 39 H 1.09002 * 110.48973 * 203.40432 * 21 20 19 40 40 H 1.08998 * 110.59905 * 80.81890 * 21 20 19 41 41 H 1.08993 * 110.03486 * 238.56624 * 22 18 17 42 42 H 1.09000 * 110.02921 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3429 7 6 5.5009 -1.2979 -0.9451 8 1 6.2195 -0.5461 -0.6539 9 6 5.8601 -2.6290 -0.9519 10 7 4.9849 -3.5445 -1.3060 11 14 7.5901 -3.1321 -0.4582 12 1 8.3756 -1.9224 -0.1051 13 1 7.5257 -4.0398 0.7154 14 1 8.2440 -3.8341 -1.5917 15 6 4.2614 1.3338 -2.3218 16 8 4.6272 0.8191 -3.3609 17 7 4.1428 2.6737 -2.2388 18 6 4.4529 3.5100 -3.4010 19 6 5.9571 3.8520 -3.4195 20 6 6.0076 5.3115 -3.9382 21 6 4.7695 5.9565 -3.2673 22 6 3.6980 4.8473 -3.3047 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 3.3851 -1.3630 -0.6735 31 1 3.9119 -1.2114 -2.3669 32 1 5.2376 -4.4810 -1.3104 33 1 3.8478 3.0841 -1.4108 34 1 4.1769 2.9906 -4.3186 35 1 6.3749 3.7899 -2.4146 36 1 6.4914 3.1867 -4.0976 37 1 5.9163 5.3381 -5.0240 38 1 6.9234 5.8074 -3.6167 39 1 4.4381 6.8263 -3.8343 40 1 4.9933 6.2361 -2.2378 41 1 3.0562 4.9774 -4.1760 42 1 3.1012 4.8742 -2.3930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094266160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -79.642892 kcal Electronic energy + Delta-G solvation = -21798.039089 eV Core-core repulsion = 18585.144445 eV Total energy + Delta-G solvation = -3212.894644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67936 -37.92889 -37.24590 -34.67635 -33.27858 -32.29411 -29.51192 -28.70157 -27.85162 -26.38312 -25.78819 -22.69140 -22.59788 -20.69932 -20.13733 -19.30327 -17.38408 -16.36930 -16.32010 -15.89510 -15.60025 -15.20669 -14.80553 -14.71547 -14.27124 -13.90403 -13.44287 -13.36519 -13.12761 -12.32707 -12.14279 -11.89109 -11.71899 -11.62529 -11.38573 -11.20838 -11.13374 -11.03420 -10.85532 -10.74992 -10.70426 -10.57093 -10.31794 -10.02586 -9.47220 -9.41190 -9.08921 -8.52831 -8.27808 -7.45048 -5.88735 -3.92115 3.38079 3.44213 3.46079 3.52269 4.00487 4.13793 4.49470 4.58191 4.64410 4.69771 4.88102 5.30937 5.40235 5.42629 5.44800 5.49354 5.53398 5.56313 5.57807 5.58634 5.62019 5.63737 5.68575 5.78051 5.86101 5.87936 6.03253 6.20809 6.26500 6.36501 6.39842 7.02894 7.11241 7.44717 7.67631 7.75632 7.92539 8.12779 8.43087 8.87880 9.09695 9.51495 9.72968 11.19065 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.006275 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.328108 B = 4461.158523 C = 6034.103341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.264 3.736 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.698 3.302 16 O -0.585 6.585 17 N -0.754 5.754 18 C 0.161 3.839 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.130 4.130 23 H 0.084 0.916 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.386 0.614 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 18.133 1.417 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.035 4.035 4 C -0.010 4.010 5 N -0.340 5.340 6 C 0.145 3.855 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.400 3.600 16 O -0.462 6.462 17 N -0.413 5.413 18 C 0.054 3.946 19 C -0.174 4.174 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.169 4.169 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.874 17.313 0.622 18.293 hybrid contribution 0.561 0.089 0.764 0.952 sum -5.313 17.402 1.386 18.248 Atomic orbital electron populations 1.22694 0.82120 1.02593 0.99023 1.88109 1.18640 1.26830 1.95105 1.23136 0.95554 0.85515 0.99298 1.21384 0.90982 0.98463 0.90197 1.47478 1.68381 1.09358 1.08798 1.19198 0.96425 0.71131 0.98755 1.21559 0.97658 0.92110 1.44704 0.92721 1.24908 0.97220 0.96454 0.95567 1.69961 1.34159 1.00830 1.48493 0.86503 0.84845 0.78378 0.78000 1.19974 1.21113 1.21031 1.16009 0.78805 0.80643 0.84559 1.90874 1.53534 1.72537 1.29287 1.45543 1.75206 1.05466 1.15077 1.21328 0.93722 0.89731 0.89781 1.22836 0.96931 0.95715 1.01952 1.22490 0.97746 0.95831 1.00173 1.22338 0.95493 0.97433 1.00774 1.22438 0.98008 0.94104 1.02323 0.89752 0.94747 0.94669 0.93291 0.93803 0.88945 0.90893 0.93727 0.94342 0.93011 0.77901 0.89465 0.91281 0.91029 0.91489 0.91687 0.91789 0.91687 0.91034 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.50 9.53 -35.23 -0.34 -6.83 16 3 C 0.04 0.63 6.28 37.16 0.23 0.86 16 4 C 0.12 1.91 5.58 -4.04 -0.02 1.89 16 5 N -0.61 -13.42 2.42 -180.80 -0.44 -13.86 16 6 C 0.26 7.29 4.98 -5.19 -0.03 7.27 16 7 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 8 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 11 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.70 15.37 8.27 -86.92 -0.72 14.65 16 16 O -0.59 -15.71 15.58 5.29 0.08 -15.63 16 17 N -0.75 -12.08 4.91 -57.58 -0.28 -12.36 16 18 C 0.16 2.26 3.24 -66.81 -0.22 2.05 16 19 C -0.14 -1.84 6.54 -25.03 -0.16 -2.00 16 20 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 21 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 22 C -0.13 -1.31 6.57 -25.61 -0.17 -1.48 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.64 8.07 -51.93 -0.42 1.23 16 29 H 0.07 0.95 6.37 -51.93 -0.33 0.62 16 30 H 0.04 1.27 7.12 -51.93 -0.37 0.90 16 31 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 33 H 0.39 5.02 6.04 -40.82 -0.25 4.77 16 34 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 35 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.62 7.61 -51.93 -0.40 0.22 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -35.60 341.56 -8.00 -43.60 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.15 Total: 1.16 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.73 Total: 8.05 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.02 Total: -53.11 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.25 Total: -22.46 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.60 -8.00 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094266160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.045 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds