Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00166 * 2 1 4 4 C 1.52997 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47057 * 65.00261 * 4 3 2 6 6 C 1.46498 * 119.99825 * 269.99779 * 5 4 3 7 7 C 1.50702 * 109.47425 * 269.99938 * 6 5 4 8 8 H 1.08002 * 119.99777 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00104 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47089 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47071 * 119.99947 * 11 9 7 14 14 H 1.48497 * 109.47206 * 240.00218 * 11 9 7 15 15 C 1.34774 * 119.99963 * 90.00033 * 5 4 3 16 16 O 1.21586 * 120.00048 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99940 * 0.02562 * 15 5 4 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 5 19 19 C 1.54268 * 110.02813 * 272.63206 * 18 17 15 20 20 C 1.54971 * 104.15564 * 217.13629 * 19 18 17 21 21 C 1.54883 * 102.77798 * 37.88503 * 20 19 18 22 22 C 1.53871 * 110.03427 * 155.40981 * 18 17 15 23 23 H 1.09004 * 109.47557 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46925 * 299.99745 * 1 2 3 25 25 H 1.08997 * 109.47375 * 59.99522 * 1 2 3 26 26 H 1.09000 * 109.46753 * 60.00666 * 3 2 1 27 27 H 1.08998 * 109.47418 * 300.00224 * 3 2 1 28 28 H 1.09006 * 109.47180 * 305.00172 * 4 3 2 29 29 H 1.09004 * 109.47454 * 185.00246 * 4 3 2 30 30 H 1.09002 * 109.47489 * 30.00255 * 6 5 4 31 31 H 1.08996 * 109.47047 * 149.99967 * 6 5 4 32 32 H 0.96998 * 119.99439 * 180.02562 * 10 9 7 33 33 H 0.97005 * 120.00161 * 359.72198 * 17 15 5 34 34 H 1.08996 * 110.01294 * 34.01804 * 18 17 15 35 35 H 1.09004 * 110.48773 * 335.77712 * 19 18 17 36 36 H 1.08996 * 110.48996 * 98.42933 * 19 18 17 37 37 H 1.09002 * 110.71525 * 279.57326 * 20 19 18 38 38 H 1.08996 * 110.92520 * 156.29778 * 20 19 18 39 39 H 1.09002 * 110.48973 * 203.40432 * 21 20 19 40 40 H 1.08998 * 110.59905 * 80.81890 * 21 20 19 41 41 H 1.08993 * 110.03486 * 238.56624 * 22 18 17 42 42 H 1.09000 * 110.02921 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3429 7 6 5.5009 -1.2979 -0.9451 8 1 6.2195 -0.5461 -0.6539 9 6 5.8601 -2.6290 -0.9519 10 7 4.9849 -3.5445 -1.3060 11 14 7.5901 -3.1321 -0.4582 12 1 8.3756 -1.9224 -0.1051 13 1 7.5257 -4.0398 0.7154 14 1 8.2440 -3.8341 -1.5917 15 6 4.2614 1.3338 -2.3218 16 8 4.6272 0.8191 -3.3609 17 7 4.1428 2.6737 -2.2388 18 6 4.4529 3.5100 -3.4010 19 6 5.9571 3.8520 -3.4195 20 6 6.0076 5.3115 -3.9382 21 6 4.7695 5.9565 -3.2673 22 6 3.6980 4.8473 -3.3047 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 3.3851 -1.3630 -0.6735 31 1 3.9119 -1.2114 -2.3669 32 1 5.2376 -4.4810 -1.3104 33 1 3.8478 3.0841 -1.4108 34 1 4.1769 2.9906 -4.3186 35 1 6.3749 3.7899 -2.4146 36 1 6.4914 3.1867 -4.0976 37 1 5.9163 5.3381 -5.0240 38 1 6.9234 5.8074 -3.6167 39 1 4.4381 6.8263 -3.8343 40 1 4.9933 6.2361 -2.2378 41 1 3.0562 4.9774 -4.1760 42 1 3.1012 4.8742 -2.3930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094266160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -104.747721 kcal Electronic energy + Delta-G solvation = -21799.127716 eV Core-core repulsion = 18585.144445 eV Total energy + Delta-G solvation = -3213.983271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24532 -39.08849 -38.52098 -36.45414 -35.04801 -34.12786 -31.06077 -29.61298 -29.37174 -27.84641 -27.08439 -24.73801 -23.95427 -21.59303 -21.27373 -20.88478 -18.93415 -18.54524 -17.74898 -17.11329 -16.81804 -16.60644 -16.31778 -16.08690 -15.68938 -15.49710 -14.84137 -14.67343 -14.30160 -14.21941 -13.61895 -13.31158 -13.09625 -12.96396 -12.85200 -12.74407 -12.53260 -12.38909 -12.16696 -11.98169 -11.95717 -11.90403 -11.69411 -11.63093 -11.42846 -10.97904 -10.60636 -10.53318 -10.04423 -9.25447 -8.15860 -6.30875 1.36162 1.39114 1.50783 1.92949 2.33150 2.43744 2.96662 3.11137 3.18159 3.66557 3.77761 4.04481 4.16133 4.25940 4.35369 4.44917 4.50111 4.53792 4.56592 4.57612 4.61530 4.68710 4.83489 4.86314 4.93504 4.95636 5.07434 5.11240 5.24027 5.28101 5.32433 5.34889 5.49934 5.62622 5.78423 5.89162 6.14833 6.22857 6.38869 6.79569 7.27372 7.35856 7.82791 8.90812 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.006275 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.328108 B = 4461.158523 C = 6034.103341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.046 3.954 4 C 0.108 3.892 5 N -0.612 5.612 6 C 0.288 3.712 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.692 3.308 16 O -0.645 6.645 17 N -0.729 5.729 18 C 0.152 3.848 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.121 4.121 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.029 0.971 31 H -0.015 1.015 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 21.111 3.068 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.336 6.336 3 C -0.031 4.031 4 C -0.015 4.015 5 N -0.346 5.346 6 C 0.166 3.834 7 C -0.578 4.578 8 H 0.068 0.932 9 C -0.193 4.193 10 N -0.570 5.570 11 Si 0.793 3.207 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.394 3.606 16 O -0.527 6.527 17 N -0.388 5.388 18 C 0.046 3.954 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.159 4.159 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.132 0.868 30 H 0.047 0.953 31 H 0.003 0.997 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.896 20.375 2.324 21.338 hybrid contribution 0.506 -0.830 0.228 0.999 sum -5.390 19.545 2.552 20.434 Atomic orbital electron populations 1.22846 0.80059 1.03059 1.00763 1.88047 1.21132 1.28925 1.95503 1.23179 0.93425 0.84878 1.01624 1.21759 0.93230 0.99649 0.86902 1.47295 1.68750 1.07561 1.11021 1.18510 0.95333 0.74642 0.94867 1.21807 0.98367 0.92532 1.45141 0.93180 1.25868 1.01858 0.96366 0.95224 1.70091 1.36473 1.01346 1.49058 0.85365 0.79065 0.78269 0.78035 1.19210 1.19309 1.20794 1.16247 0.78423 0.82363 0.83571 1.90826 1.56127 1.74130 1.31598 1.45305 1.73711 1.03144 1.16596 1.21573 0.94994 0.91137 0.87676 1.22802 0.96006 0.97895 1.01031 1.22471 0.99441 0.93091 1.00530 1.22335 0.93768 0.97311 1.01739 1.22401 0.98242 0.91455 1.03760 0.90143 0.91771 0.93975 0.88783 0.93249 0.90328 0.86776 0.95272 0.99674 0.92572 0.75636 0.92659 0.91834 0.94262 0.91134 0.90351 0.89503 0.90456 0.90012 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.59 9.53 -148.98 -1.42 -16.01 16 3 C 0.05 1.25 6.28 71.98 0.45 1.70 16 4 C 0.11 3.47 5.58 86.38 0.48 3.96 16 5 N -0.61 -27.94 2.42 -844.19 -2.04 -29.98 16 6 C 0.29 16.83 4.98 85.63 0.43 17.25 16 7 C -0.54 -33.04 9.39 25.60 0.24 -32.80 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -59.19 13.29 21.45 0.28 -58.91 16 11 Si 0.97 47.10 29.54 68.60 2.03 49.12 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 15 C 0.69 31.51 8.27 179.06 1.48 32.99 16 16 O -0.64 -36.88 15.58 -3.99 -0.06 -36.94 16 17 N -0.73 -22.87 4.91 -454.35 -2.23 -25.10 16 18 C 0.15 4.22 3.24 45.71 0.15 4.36 16 19 C -0.14 -3.75 6.54 31.70 0.21 -3.54 16 20 C -0.12 -2.11 6.91 31.91 0.22 -1.89 16 21 C -0.11 -1.55 6.83 31.67 0.22 -1.33 16 22 C -0.12 -2.05 6.57 31.32 0.21 -1.85 16 23 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 2.77 8.07 -2.38 -0.02 2.75 16 29 H 0.11 2.65 6.37 -2.38 -0.02 2.64 16 30 H 0.03 1.77 7.12 -2.39 -0.02 1.75 16 31 H -0.01 -1.01 7.42 -2.39 -0.02 -1.03 16 32 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.41 9.46 6.04 -92.70 -0.56 8.90 16 34 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 35 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.19 7.61 -2.39 -0.02 1.18 16 Total: -1.00 -83.73 341.56 2.78 -80.95 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.43 Total: 15.27 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.79 Total: 21.60 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.99 Total: -114.00 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.48 Total: -52.95 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -83.73 2.78 -80.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094266160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -83.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds