Wall clock time and date at job start Mon Mar 30 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46952 * 111.00235 * 2 1 4 4 C 1.53046 * 109.37062 * 183.18662 * 3 2 1 5 5 N 1.46959 * 109.36344 * 301.60158 * 4 3 2 6 6 C 1.46894 * 110.99945 * 183.18402 * 5 4 3 7 7 C 1.46952 * 110.88007 * 59.31381 * 5 4 3 8 8 H 1.09006 * 109.49063 * 60.65323 * 7 5 4 9 9 C 1.53002 * 109.48832 * 180.71241 * 7 5 4 10 10 N 1.46909 * 109.47117 * 295.46512 * 9 7 5 11 11 C 1.46900 * 110.99747 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46692 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99608 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99881 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99589 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99857 * 180.02562 * 15 14 12 18 18 N 1.31415 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47588 * 59.99538 * 19 17 15 21 21 H 1.48500 * 109.47151 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.47056 * 299.99559 * 19 17 15 23 23 C 1.46959 * 110.99945 * 123.80041 * 2 1 3 24 24 H 1.08999 * 109.47455 * 296.19955 * 1 2 3 25 25 H 1.08997 * 109.47332 * 56.20186 * 1 2 3 26 26 H 1.09002 * 109.47067 * 176.19897 * 1 2 3 27 27 H 1.09008 * 109.48731 * 303.15820 * 3 2 1 28 28 H 1.09006 * 109.49063 * 63.21532 * 3 2 1 29 29 H 1.08995 * 109.49426 * 181.62995 * 4 3 2 30 30 H 1.09004 * 109.50347 * 61.57580 * 4 3 2 31 31 H 1.09003 * 109.47727 * 285.95724 * 6 5 4 32 32 H 1.09000 * 109.47253 * 45.95452 * 6 5 4 33 33 H 1.09004 * 109.47234 * 165.95142 * 6 5 4 34 34 H 1.08999 * 109.47220 * 55.46457 * 9 7 5 35 35 H 1.08994 * 109.47342 * 175.46916 * 9 7 5 36 36 H 1.00894 * 111.00009 * 303.95615 * 10 9 7 37 37 H 1.09003 * 109.47371 * 299.99826 * 11 10 9 38 38 H 1.08999 * 109.46972 * 60.00180 * 11 10 9 39 39 H 0.97004 * 120.00537 * 359.97438 * 14 12 11 40 40 H 0.97000 * 119.99435 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.48468 * 296.77638 * 23 2 1 42 42 H 1.08995 * 109.49042 * 56.84199 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 3.5233 -0.8060 1.0598 8 1 3.8253 -1.3115 0.1425 9 6 4.0768 -1.5653 2.2674 10 7 5.5340 -1.6983 2.1362 11 6 6.1015 -2.4234 3.2809 12 6 7.5945 -2.5394 3.1117 13 8 8.1328 -2.0644 2.1342 14 7 8.3315 -3.1711 4.0468 15 6 9.6897 -3.2771 3.8927 16 1 10.1689 -2.8548 3.0219 17 6 10.4494 -3.9287 4.8565 18 7 9.8662 -4.4430 5.9159 19 14 12.3000 -4.0726 4.6469 20 1 12.8973 -2.7148 4.5768 21 1 12.8737 -4.8061 5.8037 22 1 12.6004 -4.8108 3.3938 23 6 1.9956 -0.7632 1.1401 24 1 -0.3634 0.4537 0.9221 25 1 -0.3634 0.5716 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6012 1.9128 -0.8603 28 1 1.6937 1.8774 0.9173 29 1 3.9177 2.3448 -0.0512 30 1 3.8256 0.8482 -1.0106 31 1 5.8824 -0.0980 0.2754 32 1 5.8823 1.5772 0.8771 33 1 5.8823 0.2186 2.0271 34 1 3.8427 -1.0170 3.1798 35 1 3.6243 -2.5558 2.3124 36 1 5.7793 -2.1465 1.2662 37 1 5.8814 -1.8806 4.2002 38 1 5.6629 -3.4199 3.3334 39 1 7.9010 -3.5507 4.8288 40 1 10.3967 -4.8976 6.5889 41 1 1.6937 -0.2820 2.0704 42 1 1.6012 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225339779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:10 Heat of formation + Delta-G solvation = -7.527837 kcal Electronic energy + Delta-G solvation = -21164.017393 eV Core-core repulsion = 17986.542644 eV Total energy + Delta-G solvation = -3177.474750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.66381 -38.21883 -36.22182 -34.56085 -33.79084 -31.56265 -31.13853 -29.25562 -27.44947 -25.47061 -24.78271 -23.37427 -23.06537 -21.52493 -19.89394 -19.09949 -17.85564 -16.40439 -15.93188 -15.85367 -15.38862 -15.03539 -14.72332 -14.63579 -14.34328 -14.13120 -13.80282 -13.41813 -13.34295 -12.62196 -12.52708 -12.35504 -12.19009 -11.91698 -11.56488 -11.53824 -11.52057 -11.24750 -11.11488 -11.00139 -10.79116 -10.61194 -10.43428 -10.20106 -9.48741 -8.58751 -8.41872 -8.15785 -7.95924 -7.80925 -6.40585 -3.81367 3.20943 3.26526 3.30941 3.66080 3.92713 4.01879 4.12821 4.35826 4.76747 4.88211 4.99511 5.08582 5.16753 5.18720 5.25573 5.27374 5.32274 5.37550 5.51577 5.58970 5.60335 5.68103 5.76322 5.83163 5.87114 5.93028 6.00686 6.07512 6.24922 6.28878 6.77308 6.78061 6.92203 7.18951 7.25979 7.33516 7.56068 7.63539 8.07345 8.62556 9.18990 9.55825 10.07215 10.77155 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.050333 B = 0.003183 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.161296 B = 8794.471393 C = 9185.734598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.057 3.943 4 C 0.053 3.947 5 N -0.534 5.534 6 C 0.028 3.972 7 C 0.091 3.909 8 H 0.047 0.953 9 C 0.063 3.937 10 N -0.660 5.660 11 C 0.047 3.953 12 C 0.442 3.558 13 O -0.583 6.583 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.063 3.937 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.347 0.653 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 7.086 -7.344 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.076 4.076 5 N -0.260 5.260 6 C -0.119 4.119 7 C -0.019 4.019 8 H 0.065 0.935 9 C -0.067 4.067 10 N -0.292 5.292 11 C -0.086 4.086 12 C 0.227 3.773 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.066 4.066 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.060 7.910 -7.566 20.270 hybrid contribution 0.317 -1.271 0.248 1.333 sum -16.743 6.639 -7.318 19.441 Atomic orbital electron populations 1.22335 0.87279 1.02169 1.00439 1.62113 1.07670 1.14196 1.43105 1.22187 0.95155 0.89053 1.00721 1.22187 0.93766 0.98755 0.92844 1.62231 1.09996 1.12472 1.41267 1.22780 0.84502 0.99064 1.05599 1.21636 0.93044 0.89690 0.97489 0.93472 1.21990 0.88293 0.97810 0.98596 1.60676 1.08630 1.54607 1.05273 1.21718 0.94817 0.96750 0.95310 1.19804 0.87863 0.84140 0.85498 1.90520 1.72906 1.51769 1.31551 1.41860 1.07689 1.49561 1.20946 1.19650 0.81998 1.33868 1.07377 0.87988 1.25257 1.00657 0.96761 0.95264 1.69607 1.36887 1.37571 1.10325 0.85923 0.82109 0.78562 0.77648 1.19878 1.20993 1.19940 1.22147 0.94261 0.98277 0.91882 0.95622 0.91460 0.91398 0.90654 0.94054 0.90448 0.94404 0.95659 0.93947 0.86419 0.90116 0.94812 0.83377 0.89504 0.93921 0.77470 0.91836 0.93796 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 60.06 0.58 0.78 16 2 N -0.55 -5.68 4.97 -242.76 -1.21 -6.88 16 3 C 0.06 0.57 5.62 -3.77 -0.02 0.55 16 4 C 0.05 0.61 5.59 -3.77 -0.02 0.59 16 5 N -0.53 -7.06 4.78 -234.73 -1.12 -8.18 16 6 C 0.03 0.42 8.24 60.06 0.49 0.91 16 7 C 0.09 1.12 2.29 -67.66 -0.16 0.97 16 8 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 9 C 0.06 0.80 5.09 -3.82 -0.02 0.78 16 10 N -0.66 -10.36 2.38 -115.05 -0.27 -10.63 16 11 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 12 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 13 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 14 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 15 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 19 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 C 0.06 0.67 4.90 -3.77 -0.02 0.65 16 24 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.64 8.13 -51.92 -0.42 0.22 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 32 H 0.04 0.60 7.95 -51.93 -0.41 0.19 16 33 H 0.12 2.03 5.84 -51.93 -0.30 1.73 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.35 5.77 8.19 -39.29 -0.32 5.45 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -30.13 334.54 -8.53 -38.67 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.18 Total: 11.36 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.48 Total: 8.21 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -1.94 Total: -63.92 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.09 Total: -15.47 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.13 -8.53 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225339779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.139 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds