Wall clock time and date at job start Mon Mar 30 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46952 * 111.00235 * 2 1 4 4 C 1.53046 * 109.37062 * 183.18662 * 3 2 1 5 5 N 1.46959 * 109.36344 * 301.60158 * 4 3 2 6 6 C 1.46894 * 110.99945 * 183.18402 * 5 4 3 7 7 C 1.46952 * 110.88007 * 59.31381 * 5 4 3 8 8 H 1.09006 * 109.49063 * 60.65323 * 7 5 4 9 9 C 1.53002 * 109.48832 * 180.71241 * 7 5 4 10 10 N 1.46909 * 109.47117 * 295.46512 * 9 7 5 11 11 C 1.46900 * 110.99747 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46692 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99608 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99881 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99589 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99857 * 180.02562 * 15 14 12 18 18 N 1.31415 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47588 * 59.99538 * 19 17 15 21 21 H 1.48500 * 109.47151 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.47056 * 299.99559 * 19 17 15 23 23 C 1.46959 * 110.99945 * 123.80041 * 2 1 3 24 24 H 1.08999 * 109.47455 * 296.19955 * 1 2 3 25 25 H 1.08997 * 109.47332 * 56.20186 * 1 2 3 26 26 H 1.09002 * 109.47067 * 176.19897 * 1 2 3 27 27 H 1.09008 * 109.48731 * 303.15820 * 3 2 1 28 28 H 1.09006 * 109.49063 * 63.21532 * 3 2 1 29 29 H 1.08995 * 109.49426 * 181.62995 * 4 3 2 30 30 H 1.09004 * 109.50347 * 61.57580 * 4 3 2 31 31 H 1.09003 * 109.47727 * 285.95724 * 6 5 4 32 32 H 1.09000 * 109.47253 * 45.95452 * 6 5 4 33 33 H 1.09004 * 109.47234 * 165.95142 * 6 5 4 34 34 H 1.08999 * 109.47220 * 55.46457 * 9 7 5 35 35 H 1.08994 * 109.47342 * 175.46916 * 9 7 5 36 36 H 1.00894 * 111.00009 * 303.95615 * 10 9 7 37 37 H 1.09003 * 109.47371 * 299.99826 * 11 10 9 38 38 H 1.08999 * 109.46972 * 60.00180 * 11 10 9 39 39 H 0.97004 * 120.00537 * 359.97438 * 14 12 11 40 40 H 0.97000 * 119.99435 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.48468 * 296.77638 * 23 2 1 42 42 H 1.08995 * 109.49042 * 56.84199 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 3.5233 -0.8060 1.0598 8 1 3.8253 -1.3115 0.1425 9 6 4.0768 -1.5653 2.2674 10 7 5.5340 -1.6983 2.1362 11 6 6.1015 -2.4234 3.2809 12 6 7.5945 -2.5394 3.1117 13 8 8.1328 -2.0644 2.1342 14 7 8.3315 -3.1711 4.0468 15 6 9.6897 -3.2771 3.8927 16 1 10.1689 -2.8548 3.0219 17 6 10.4494 -3.9287 4.8565 18 7 9.8662 -4.4430 5.9159 19 14 12.3000 -4.0726 4.6469 20 1 12.8973 -2.7148 4.5768 21 1 12.8737 -4.8061 5.8037 22 1 12.6004 -4.8108 3.3938 23 6 1.9956 -0.7632 1.1401 24 1 -0.3634 0.4537 0.9221 25 1 -0.3634 0.5716 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6012 1.9128 -0.8603 28 1 1.6937 1.8774 0.9173 29 1 3.9177 2.3448 -0.0512 30 1 3.8256 0.8482 -1.0106 31 1 5.8824 -0.0980 0.2754 32 1 5.8823 1.5772 0.8771 33 1 5.8823 0.2186 2.0271 34 1 3.8427 -1.0170 3.1798 35 1 3.6243 -2.5558 2.3124 36 1 5.7793 -2.1465 1.2662 37 1 5.8814 -1.8806 4.2002 38 1 5.6629 -3.4199 3.3334 39 1 7.9010 -3.5507 4.8288 40 1 10.3967 -4.8976 6.5889 41 1 1.6937 -0.2820 2.0704 42 1 1.6012 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225339779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:10 Heat of formation + Delta-G solvation = -31.465871 kcal Electronic energy + Delta-G solvation = -21165.055424 eV Core-core repulsion = 17986.542644 eV Total energy + Delta-G solvation = -3178.512781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66603 -39.99701 -37.31140 -36.01256 -35.45859 -33.26996 -32.51768 -30.15499 -28.85716 -26.74722 -26.11729 -24.64594 -24.08572 -22.48743 -21.18779 -20.60063 -19.85880 -17.83815 -17.34453 -16.79129 -16.59542 -16.33565 -16.05001 -15.82721 -15.64277 -15.53042 -15.05292 -14.78996 -14.59905 -14.21742 -13.54474 -13.37534 -13.32696 -13.11319 -13.04611 -12.98755 -12.70421 -12.59229 -12.42492 -12.23073 -12.12499 -12.07826 -11.73950 -11.58270 -11.48782 -10.31274 -10.00095 -9.38286 -9.25211 -9.01940 -8.45707 -5.94224 1.40140 1.41863 1.52712 2.07601 2.29445 2.78551 3.01443 3.09067 3.21948 3.54264 3.89598 4.02205 4.08915 4.25496 4.30968 4.36137 4.38258 4.48681 4.57106 4.58619 4.64445 4.68595 4.74008 4.76801 4.82363 4.85011 4.95460 5.00229 5.03739 5.18450 5.41564 5.65161 5.85849 6.00128 6.01377 6.09466 6.21502 6.26361 6.37659 6.61508 7.13824 7.58186 8.13475 8.71602 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.050333 B = 0.003183 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.161296 B = 8794.471393 C = 9185.734598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.561 5.561 3 C 0.062 3.938 4 C 0.052 3.948 5 N -0.538 5.538 6 C 0.040 3.960 7 C 0.093 3.907 8 H 0.032 0.968 9 C 0.069 3.931 10 N -0.668 5.668 11 C 0.063 3.937 12 C 0.440 3.560 13 O -0.621 6.621 14 N -0.574 5.574 15 C -0.333 4.333 16 H 0.079 0.921 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.069 3.931 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.340 0.660 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.043 0.957 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.098 7.099 -7.172 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.066 4.066 4 C -0.077 4.077 5 N -0.263 5.263 6 C -0.108 4.108 7 C -0.016 4.016 8 H 0.050 0.950 9 C -0.060 4.060 10 N -0.300 5.300 11 C -0.070 4.070 12 C 0.227 3.773 13 O -0.507 6.507 14 N -0.212 5.212 15 C -0.463 4.463 16 H 0.097 0.903 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.060 4.060 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.547 7.923 -7.381 21.477 hybrid contribution 0.702 -1.237 0.145 1.429 sum -17.845 6.687 -7.236 20.384 Atomic orbital electron populations 1.22382 0.85617 1.02971 1.01105 1.62130 1.09225 1.14220 1.42952 1.22161 0.93778 0.89258 1.01423 1.22257 0.95099 0.98702 0.91616 1.62254 1.08652 1.13238 1.42182 1.22540 0.85959 0.98669 1.03597 1.21647 0.94455 0.88951 0.96587 0.94977 1.22012 0.86255 0.98945 0.98829 1.60683 1.10767 1.54292 1.04291 1.21557 0.90242 0.98593 0.96564 1.20857 0.90280 0.82071 0.84076 1.90492 1.74471 1.52825 1.32917 1.41930 1.07178 1.50397 1.21666 1.19625 0.83617 1.35540 1.07507 0.90338 1.26025 1.04757 0.95848 0.94659 1.69668 1.38401 1.37520 1.10637 0.85008 0.76903 0.78556 0.77987 1.19760 1.19500 1.19706 1.22087 0.92605 0.99220 0.92077 0.95245 0.90404 0.90645 0.88900 0.94222 0.89685 0.95472 0.97440 0.93566 0.88541 0.89859 0.92827 0.84191 0.87806 0.91579 0.77007 0.91321 0.93827 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.60 127.69 1.23 1.58 16 2 N -0.56 -10.43 4.97 -921.97 -4.58 -15.01 16 3 C 0.06 1.12 5.62 86.31 0.49 1.61 16 4 C 0.05 1.13 5.59 86.31 0.48 1.61 16 5 N -0.54 -13.84 4.78 -896.56 -4.29 -18.13 16 6 C 0.04 1.23 8.24 127.69 1.05 2.28 16 7 C 0.09 2.19 2.29 44.92 0.10 2.29 16 8 H 0.03 0.86 8.14 -2.38 -0.02 0.85 16 9 C 0.07 1.63 5.09 86.30 0.44 2.07 16 10 N -0.67 -20.66 2.38 -517.90 -1.23 -21.89 16 11 C 0.06 2.10 6.17 85.56 0.53 2.63 16 12 C 0.44 20.74 7.82 87.66 0.69 21.42 16 13 O -0.62 -34.05 15.78 -3.05 -0.05 -34.10 16 14 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 15 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 16 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 18 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 19 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 C 0.07 1.32 4.90 86.31 0.42 1.74 16 24 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 25 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 1.36 8.13 -2.38 -0.02 1.34 16 28 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.08 1.71 8.03 -2.39 -0.02 1.69 16 30 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.01 0.23 7.72 -2.39 -0.02 0.21 16 32 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 33 H 0.10 3.38 5.84 -2.38 -0.01 3.36 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.34 11.38 8.19 -89.70 -0.74 10.64 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 39 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 40 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -65.16 334.54 -3.22 -68.38 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.46 Total: 37.51 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.70 Total: 18.81 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -11.44 Total: -135.79 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.05 Total: -34.10 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.16 -3.22 -68.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225339779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.911 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds