Wall clock time and date at job start Mon Mar 30 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46961 * 110.99737 * 2 1 4 4 C 1.53049 * 109.36284 * 183.19093 * 3 2 1 5 5 N 1.46951 * 109.36526 * 301.59346 * 4 3 2 6 6 C 1.46898 * 111.00362 * 183.18879 * 5 4 3 7 7 C 1.50701 * 109.46832 * 74.24073 * 6 5 4 8 8 O 1.21277 * 120.00191 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99746 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99657 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00420 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99972 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47124 * 119.99965 * 15 13 11 18 18 H 1.48494 * 109.46894 * 239.99961 * 15 13 11 19 19 C 1.47008 * 110.89159 * 59.32157 * 5 4 3 20 20 H 1.09004 * 109.48076 * 60.64426 * 19 5 4 21 21 C 1.52997 * 109.52007 * 180.72400 * 19 5 4 22 22 N 1.46900 * 109.47399 * 54.27760 * 21 19 5 23 23 C 1.46951 * 111.00362 * 123.79524 * 2 1 3 24 24 H 1.09003 * 109.47172 * 296.20185 * 1 2 3 25 25 H 1.09000 * 109.47759 * 56.20142 * 1 2 3 26 26 H 1.08996 * 109.47234 * 176.20291 * 1 2 3 27 27 H 1.09006 * 109.48692 * 303.15616 * 3 2 1 28 28 H 1.08994 * 109.49122 * 63.21938 * 3 2 1 29 29 H 1.09005 * 109.49078 * 61.56323 * 4 3 2 30 30 H 1.09002 * 109.48761 * 181.60689 * 4 3 2 31 31 H 1.08996 * 109.47536 * 194.24074 * 6 5 4 32 32 H 1.09000 * 109.47281 * 314.24470 * 6 5 4 33 33 H 0.97002 * 120.00283 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47382 * 299.99784 * 10 9 7 35 35 H 1.08998 * 109.47463 * 60.00398 * 10 9 7 36 36 H 0.96996 * 119.99592 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.47288 * 174.28677 * 21 19 5 38 38 H 1.09005 * 109.47008 * 294.27969 * 21 19 5 39 39 H 1.00898 * 111.00252 * 179.97438 * 22 21 19 40 40 H 1.00893 * 111.00137 * 303.96284 * 22 21 19 41 41 H 1.09005 * 109.48972 * 296.78163 * 23 2 1 42 42 H 1.08999 * 109.48888 * 56.82119 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5661 1.0597 6 6 5.5191 0.5661 1.0597 7 6 6.0213 1.9171 1.4996 8 8 5.2332 2.7935 1.7855 9 7 7.3464 2.1515 1.5754 10 6 7.8347 3.4647 2.0036 11 6 9.3417 3.4648 2.0035 12 1 9.8818 2.5757 1.7131 13 6 10.0311 4.5999 2.3741 14 7 9.3734 5.6827 2.7273 15 14 11.8991 4.6002 2.3733 16 1 12.3941 3.2693 1.9387 17 1 12.3935 5.6423 1.4381 18 1 12.3946 4.8890 3.7430 19 6 3.5234 -0.8064 1.0601 20 1 3.8254 -1.3119 0.1427 21 6 4.0765 -1.5659 2.2676 22 7 3.7856 -0.8129 3.4949 23 6 1.9957 -0.7631 1.1401 24 1 -0.3634 0.4538 0.9221 25 1 -0.3634 0.5716 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6012 1.9129 -0.8603 28 1 1.6937 1.8774 0.9173 29 1 3.8253 0.8480 -1.0107 30 1 3.9176 2.3450 -0.0517 31 1 5.8824 -0.1980 1.7468 32 1 5.8824 0.3531 0.0543 33 1 7.9768 1.4504 1.3471 34 1 7.4709 4.2292 1.3170 35 1 7.4719 3.6770 3.0092 36 1 9.8585 6.4813 2.9877 37 1 3.6083 -2.5485 2.3245 38 1 5.1549 -1.6831 2.1603 39 1 4.1408 -1.2944 4.3073 40 1 4.1543 0.1247 3.4399 41 1 1.6938 -0.2819 2.0704 42 1 1.6011 -1.7787 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226620377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:05 Heat of formation + Delta-G solvation = -18.155783 kcal Electronic energy + Delta-G solvation = -21558.569553 eV Core-core repulsion = 18380.633941 eV Total energy + Delta-G solvation = -3177.935612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95083 -38.33618 -35.87836 -34.29162 -33.80698 -32.33054 -30.36517 -29.73548 -27.48142 -25.72600 -25.37458 -23.52934 -22.33814 -21.42554 -19.67136 -19.38295 -17.18906 -16.37228 -16.24685 -15.79996 -15.49972 -15.07027 -14.99900 -14.49117 -14.38975 -14.23818 -13.89245 -13.59541 -13.49773 -12.86358 -12.57811 -12.36937 -12.07662 -11.96002 -11.89833 -11.66564 -11.34910 -11.16767 -10.96956 -10.92903 -10.72918 -10.67944 -10.32618 -9.39073 -9.05861 -8.74683 -8.64035 -8.37705 -8.16882 -7.86071 -6.18122 -4.25008 3.21979 3.29061 3.31913 3.38628 3.59759 3.87628 4.24165 4.42251 4.56480 4.83993 4.84486 5.03118 5.18018 5.18764 5.28454 5.31931 5.35697 5.38511 5.45302 5.52948 5.55929 5.60382 5.66818 5.72425 5.83239 5.97121 6.08589 6.14386 6.85186 6.91909 7.07077 7.08877 7.25452 7.32453 7.45067 7.51379 7.55245 7.66819 7.96171 8.63546 8.78645 9.13113 9.42071 10.92074 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.003718 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.518272 B = 7529.514589 C = 7944.360245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.059 3.941 4 C 0.061 3.939 5 N -0.510 5.510 6 C 0.026 3.974 7 C 0.497 3.503 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.252 3.748 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.087 3.913 20 H 0.049 0.951 21 C 0.066 3.934 22 N -0.844 5.844 23 C 0.071 3.929 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.388 0.612 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.334 0.666 40 H 0.358 0.642 41 H 0.059 0.941 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 -15.140 -4.434 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.275 5.275 3 C -0.069 4.069 4 C -0.067 4.067 5 N -0.236 5.236 6 C -0.105 4.105 7 C 0.281 3.719 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.131 3.869 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.022 4.022 20 H 0.067 0.933 21 C -0.065 4.065 22 N -0.376 5.376 23 C -0.057 4.057 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.779 -14.379 -4.363 20.387 hybrid contribution 2.461 -0.206 -0.009 2.469 sum -11.318 -14.585 -4.372 18.972 Atomic orbital electron populations 1.22304 0.87479 1.01849 1.00506 1.62205 1.07641 1.14391 1.43302 1.22136 0.94599 0.88920 1.01201 1.22206 0.94200 0.99771 0.90474 1.61707 1.05381 1.12534 1.43928 1.22146 0.89304 0.97525 1.01543 1.20300 0.83214 0.89136 0.79247 1.90657 1.55255 1.46163 1.49148 1.46466 1.05495 1.17511 1.67129 1.19070 0.93758 0.78441 0.95624 1.21265 0.90746 0.98811 1.47299 0.91930 1.24956 0.99121 0.95194 0.94773 1.69984 1.35794 1.02431 1.44017 0.86370 0.84635 0.78151 0.77807 1.19663 1.20789 1.20795 1.21771 0.95057 0.88745 0.96602 0.93304 1.21836 0.97432 0.96861 0.90419 1.58629 1.68146 1.07619 1.03189 1.22046 0.93129 0.98020 0.92534 0.95550 0.91579 0.91639 0.90566 0.93479 0.94652 0.88795 0.88615 0.92243 0.77975 0.95654 0.95588 0.92499 0.90742 0.95384 0.85392 0.82652 0.92282 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 60.06 0.58 0.83 16 2 N -0.55 -6.44 4.97 -242.76 -1.21 -7.65 16 3 C 0.06 0.76 5.62 -3.77 -0.02 0.74 16 4 C 0.06 0.87 5.27 -3.77 -0.02 0.85 16 5 N -0.51 -7.15 3.24 -227.89 -0.74 -7.88 16 6 C 0.03 0.37 5.01 -4.98 -0.02 0.34 16 7 C 0.50 9.61 7.56 -10.98 -0.08 9.53 16 8 O -0.53 -12.49 15.03 5.56 0.08 -12.41 16 9 N -0.72 -14.73 5.55 -61.47 -0.34 -15.07 16 10 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 11 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 12 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.88 -25.99 13.29 55.43 0.74 -25.26 16 15 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.09 1.02 2.33 -67.63 -0.16 0.86 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 21 C 0.07 0.68 5.88 -3.83 -0.02 0.66 16 22 N -0.84 -9.67 9.07 -10.37 -0.09 -9.76 16 23 C 0.07 0.82 4.81 -3.77 -0.02 0.80 16 24 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.57 6.59 -51.93 -0.34 1.23 16 31 H 0.10 1.18 5.55 -51.93 -0.29 0.89 16 32 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 33 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.28 6.32 -51.93 -0.33 -0.05 16 39 H 0.33 3.23 9.08 -39.29 -0.36 2.87 16 40 H 0.36 5.01 7.84 -39.30 -0.31 4.70 16 41 H 0.06 0.79 7.73 -51.93 -0.40 0.39 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -31.15 333.13 -8.74 -39.89 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.96 Total: 9.49 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.22 Total: 7.91 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -1.64 Total: -65.62 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.15 -8.74 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226620377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.736 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds