Wall clock time and date at job start Mon Mar 30 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46961 * 110.99737 * 2 1 4 4 C 1.53049 * 109.36284 * 183.19093 * 3 2 1 5 5 N 1.46951 * 109.36526 * 301.59346 * 4 3 2 6 6 C 1.46898 * 111.00362 * 183.18879 * 5 4 3 7 7 C 1.50701 * 109.46832 * 74.24073 * 6 5 4 8 8 O 1.21277 * 120.00191 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99746 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99657 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00420 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99972 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47224 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47124 * 119.99965 * 15 13 11 18 18 H 1.48494 * 109.46894 * 239.99961 * 15 13 11 19 19 C 1.47008 * 110.89159 * 59.32157 * 5 4 3 20 20 H 1.09004 * 109.48076 * 60.64426 * 19 5 4 21 21 C 1.52997 * 109.52007 * 180.72400 * 19 5 4 22 22 N 1.46900 * 109.47399 * 54.27760 * 21 19 5 23 23 C 1.46951 * 111.00362 * 123.79524 * 2 1 3 24 24 H 1.09003 * 109.47172 * 296.20185 * 1 2 3 25 25 H 1.09000 * 109.47759 * 56.20142 * 1 2 3 26 26 H 1.08996 * 109.47234 * 176.20291 * 1 2 3 27 27 H 1.09006 * 109.48692 * 303.15616 * 3 2 1 28 28 H 1.08994 * 109.49122 * 63.21938 * 3 2 1 29 29 H 1.09005 * 109.49078 * 61.56323 * 4 3 2 30 30 H 1.09002 * 109.48761 * 181.60689 * 4 3 2 31 31 H 1.08996 * 109.47536 * 194.24074 * 6 5 4 32 32 H 1.09000 * 109.47281 * 314.24470 * 6 5 4 33 33 H 0.97002 * 120.00283 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47382 * 299.99784 * 10 9 7 35 35 H 1.08998 * 109.47463 * 60.00398 * 10 9 7 36 36 H 0.96996 * 119.99592 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.47288 * 174.28677 * 21 19 5 38 38 H 1.09005 * 109.47008 * 294.27969 * 21 19 5 39 39 H 1.00898 * 111.00252 * 179.97438 * 22 21 19 40 40 H 1.00893 * 111.00137 * 303.96284 * 22 21 19 41 41 H 1.09005 * 109.48972 * 296.78163 * 23 2 1 42 42 H 1.08999 * 109.48888 * 56.82119 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5661 1.0597 6 6 5.5191 0.5661 1.0597 7 6 6.0213 1.9171 1.4996 8 8 5.2332 2.7935 1.7855 9 7 7.3464 2.1515 1.5754 10 6 7.8347 3.4647 2.0036 11 6 9.3417 3.4648 2.0035 12 1 9.8818 2.5757 1.7131 13 6 10.0311 4.5999 2.3741 14 7 9.3734 5.6827 2.7273 15 14 11.8991 4.6002 2.3733 16 1 12.3941 3.2693 1.9387 17 1 12.3935 5.6423 1.4381 18 1 12.3946 4.8890 3.7430 19 6 3.5234 -0.8064 1.0601 20 1 3.8254 -1.3119 0.1427 21 6 4.0765 -1.5659 2.2676 22 7 3.7856 -0.8129 3.4949 23 6 1.9957 -0.7631 1.1401 24 1 -0.3634 0.4538 0.9221 25 1 -0.3634 0.5716 -0.8540 26 1 -0.3633 -1.0254 -0.0681 27 1 1.6012 1.9129 -0.8603 28 1 1.6937 1.8774 0.9173 29 1 3.8253 0.8480 -1.0107 30 1 3.9176 2.3450 -0.0517 31 1 5.8824 -0.1980 1.7468 32 1 5.8824 0.3531 0.0543 33 1 7.9768 1.4504 1.3471 34 1 7.4709 4.2292 1.3170 35 1 7.4719 3.6770 3.0092 36 1 9.8585 6.4813 2.9877 37 1 3.6083 -2.5485 2.3245 38 1 5.1549 -1.6831 2.1603 39 1 4.1408 -1.2944 4.3073 40 1 4.1543 0.1247 3.4399 41 1 1.6938 -0.2819 2.0704 42 1 1.6011 -1.7787 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226620377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:04 Heat of formation + Delta-G solvation = -45.492820 kcal Electronic energy + Delta-G solvation = -21559.754976 eV Core-core repulsion = 18380.633941 eV Total energy + Delta-G solvation = -3179.121035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13814 -39.79153 -36.85736 -36.09445 -34.92079 -34.32704 -31.33048 -30.96805 -29.22271 -26.93282 -26.35998 -24.80246 -24.04072 -22.39715 -21.32956 -20.38952 -18.96298 -17.62426 -17.36272 -17.28629 -16.72936 -16.62642 -16.17436 -16.00057 -15.60339 -15.24930 -15.11214 -14.78271 -14.74122 -14.21075 -13.98515 -13.85162 -13.71956 -13.11351 -12.92948 -12.87968 -12.77105 -12.58630 -12.47657 -12.22468 -12.15018 -11.79635 -11.64479 -11.45253 -10.81305 -10.67141 -9.78901 -9.54125 -9.31689 -9.22125 -8.29391 -6.45839 1.42820 1.43773 1.57160 1.82112 2.24514 2.43433 2.97482 3.01006 3.05639 3.68758 3.82812 3.92240 4.02179 4.13703 4.24800 4.27687 4.31437 4.43351 4.48673 4.56736 4.64230 4.72447 4.78457 4.88588 4.93254 5.00643 5.01553 5.12106 5.16583 5.25587 5.49926 5.69872 5.84982 5.87907 5.94729 6.12401 6.14479 6.34576 6.64999 6.66013 6.97230 7.24068 7.55649 8.82939 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.003718 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.518272 B = 7529.514589 C = 7944.360245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.552 5.552 3 C 0.065 3.935 4 C 0.064 3.936 5 N -0.527 5.527 6 C 0.043 3.957 7 C 0.496 3.504 8 O -0.580 6.580 9 N -0.711 5.711 10 C 0.270 3.730 11 C -0.554 4.554 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.984 3.016 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.089 3.911 20 H 0.060 0.940 21 C 0.068 3.932 22 N -0.852 5.852 23 C 0.074 3.926 24 H 0.020 0.980 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.022 0.978 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.406 0.594 34 H -0.015 1.015 35 H -0.014 1.014 36 H 0.268 0.732 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.344 0.656 40 H 0.342 0.658 41 H 0.036 0.964 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -18.099 -5.341 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.063 4.063 4 C -0.064 4.064 5 N -0.253 5.253 6 C -0.088 4.088 7 C 0.282 3.718 8 O -0.460 6.460 9 N -0.362 5.362 10 C 0.147 3.853 11 C -0.592 4.592 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.807 3.193 16 H -0.176 1.176 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.019 4.019 20 H 0.078 0.922 21 C -0.064 4.064 22 N -0.383 5.383 23 C -0.054 4.054 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.242 0.758 34 H 0.003 0.997 35 H 0.004 0.996 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.054 0.946 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.917 -17.415 -5.284 22.317 hybrid contribution 2.068 0.712 0.280 2.205 sum -10.849 -16.703 -5.003 20.536 Atomic orbital electron populations 1.22382 0.86064 1.03100 1.00619 1.62263 1.08956 1.13216 1.43173 1.22038 0.93869 0.89865 1.00534 1.22084 0.95008 0.98162 0.91120 1.61621 1.05204 1.14336 1.44107 1.22007 0.89648 0.93963 1.03135 1.21287 0.82122 0.90792 0.77587 1.90641 1.56247 1.48299 1.50800 1.46188 1.06686 1.15968 1.67356 1.18479 0.94052 0.80335 0.92465 1.21655 0.90875 0.99681 1.46985 0.89844 1.26067 1.04992 0.94610 0.94001 1.70147 1.38302 1.03394 1.45140 0.85120 0.77394 0.78970 0.77786 1.17580 1.20526 1.20503 1.21868 0.95021 0.87244 0.97798 0.92192 1.21915 0.98162 0.97197 0.89120 1.58628 1.68365 1.06955 1.04343 1.22055 0.93247 0.98724 0.91419 0.96180 0.90647 0.89907 0.89343 0.95934 0.93546 0.92185 0.86016 0.89861 0.75850 0.99725 0.99618 0.92298 0.88630 0.94376 0.84306 0.84489 0.94569 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.60 127.69 1.23 1.68 16 2 N -0.55 -12.00 4.97 -921.96 -4.58 -16.58 16 3 C 0.07 1.67 5.62 86.31 0.49 2.15 16 4 C 0.06 1.82 5.27 86.31 0.45 2.28 16 5 N -0.53 -14.27 3.24 -874.92 -2.83 -17.11 16 6 C 0.04 1.15 5.01 85.56 0.43 1.58 16 7 C 0.50 19.43 7.56 87.66 0.66 20.09 16 8 O -0.58 -28.47 15.03 -3.02 -0.05 -28.51 16 9 N -0.71 -29.50 5.55 -466.79 -2.59 -32.09 16 10 C 0.27 14.76 5.43 85.63 0.46 15.23 16 11 C -0.55 -29.99 9.28 25.60 0.24 -29.75 16 12 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 13 C 0.00 0.15 5.46 84.65 0.46 0.62 16 14 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 15 Si 0.98 42.17 29.54 68.60 2.03 44.20 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 19 C 0.09 1.86 2.33 44.91 0.10 1.96 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 C 0.07 1.18 5.88 86.30 0.51 1.69 16 22 N -0.85 -18.31 9.07 -186.72 -1.69 -20.00 16 23 C 0.07 1.56 4.81 86.31 0.42 1.97 16 24 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.99 8.13 -2.38 -0.02 1.97 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 30 H 0.06 2.10 6.59 -2.39 -0.02 2.09 16 31 H 0.12 2.65 5.55 -2.39 -0.01 2.64 16 32 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 33 H 0.41 13.80 8.32 -92.71 -0.77 13.03 16 34 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 0.61 6.32 -2.38 -0.02 0.59 16 39 H 0.34 6.09 9.08 -89.70 -0.81 5.28 16 40 H 0.34 9.41 7.84 -89.70 -0.70 8.71 16 41 H 0.04 0.94 7.73 -2.38 -0.02 0.93 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.69 333.13 -5.24 -75.93 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -1.26 Total: 30.67 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 5.45 Total: 19.50 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -11.41 Total: -141.78 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.05 Total: -28.51 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.69 -5.24 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226620377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.433 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds