Wall clock time and date at job start Mon Mar 30 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 113.99678 * 2 1 4 4 C 1.52997 * 110.01873 * 304.01421 * 3 2 1 5 5 N 1.46907 * 109.46987 * 301.39246 * 4 3 2 6 6 C 1.46903 * 110.99988 * 174.17838 * 5 4 3 7 7 C 1.50704 * 109.46888 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00084 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99914 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00003 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00089 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99760 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00084 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47185 * 60.00025 * 15 13 11 17 17 H 1.48494 * 109.47248 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47255 * 300.00502 * 15 13 11 19 19 C 1.54268 * 110.03631 * 65.40286 * 3 2 1 20 20 C 1.54967 * 104.15926 * 95.75210 * 19 3 2 21 21 C 1.54894 * 102.77728 * 37.89352 * 20 19 3 22 22 C 1.53881 * 110.03211 * 182.62292 * 3 2 1 23 23 H 1.09007 * 109.46685 * 176.89977 * 1 2 3 24 24 H 1.09001 * 109.47071 * 296.89683 * 1 2 3 25 25 H 1.08998 * 109.47246 * 56.89705 * 1 2 3 26 26 H 1.08996 * 109.47483 * 181.39721 * 4 3 2 27 27 H 1.08995 * 109.47583 * 61.38889 * 4 3 2 28 28 H 1.00903 * 110.99761 * 298.12939 * 5 4 3 29 29 H 1.08994 * 109.46658 * 299.99640 * 6 5 4 30 30 H 1.08993 * 109.47021 * 60.00348 * 6 5 4 31 31 H 0.96999 * 119.99800 * 0.02562 * 9 7 6 32 32 H 1.09003 * 109.47475 * 300.00678 * 10 9 7 33 33 H 1.09000 * 109.46812 * 60.00346 * 10 9 7 34 34 H 0.97002 * 120.00218 * 180.02562 * 14 13 11 35 35 H 1.08997 * 110.48947 * 214.39928 * 19 3 2 36 36 H 1.09002 * 110.48390 * 337.04941 * 19 3 2 37 37 H 1.08998 * 110.72288 * 279.58095 * 20 19 3 38 38 H 1.09003 * 110.76474 * 156.22603 * 20 19 3 39 39 H 1.09000 * 110.48685 * 203.40535 * 21 20 19 40 40 H 1.08999 * 110.48604 * 80.75953 * 21 20 19 41 41 H 1.08988 * 110.03106 * 359.94674 * 22 3 2 42 42 H 1.09003 * 110.03312 * 121.38441 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4884 2.1110 -1.1916 5 7 1.8149 1.4071 -2.4390 6 6 1.2103 2.0797 -3.5967 7 6 1.5668 1.3311 -4.8551 8 8 2.2562 0.3351 -4.7936 9 7 1.1186 1.7677 -6.0488 10 6 1.4656 1.0404 -7.2722 11 6 0.8452 1.7302 -8.4598 12 1 0.2523 2.6215 -8.3176 13 6 1.0348 1.2234 -9.7280 14 7 1.7565 0.1377 -9.9012 15 14 0.2665 2.0788 -11.2002 16 1 0.7808 3.4691 -11.2889 17 1 0.6181 1.3415 -12.4402 18 1 -1.2097 2.1065 -11.0418 19 6 1.6739 2.0337 1.3178 20 6 2.9104 1.7803 2.2170 21 6 4.0873 1.8679 1.2138 22 6 3.5438 1.1997 -0.0662 23 1 -0.3633 -1.0262 -0.0556 24 1 -0.3633 0.4649 0.9165 25 1 -0.3634 0.5612 -0.8608 26 1 1.9558 3.0957 -1.1971 27 1 0.4073 2.2224 -1.1096 28 1 2.8135 1.3183 -2.5534 29 1 0.1268 2.0998 -3.4800 30 1 1.5878 3.1000 -3.6621 31 1 0.5669 2.5641 -6.0979 32 1 2.5492 1.0213 -7.3887 33 1 1.0892 0.0195 -7.2071 34 1 1.8902 -0.2186 -10.7934 35 1 1.5433 3.1013 1.1412 36 1 0.7783 1.6085 1.7708 37 1 2.8616 0.7900 2.6696 38 1 2.9966 2.5521 2.9819 39 1 4.9519 1.3221 1.5914 40 1 4.3467 2.9087 1.0201 41 1 3.8448 0.1527 -0.0973 42 1 3.9165 1.7223 -0.9472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310564101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:45 Heat of formation + Delta-G solvation = -118.016672 kcal Electronic energy + Delta-G solvation = -20902.017481 eV Core-core repulsion = 17687.458825 eV Total energy + Delta-G solvation = -3214.558656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86676 -40.28922 -36.55738 -36.44366 -35.90271 -34.34225 -30.94623 -29.82751 -29.41745 -27.77516 -26.71280 -24.74318 -23.87939 -21.58421 -21.31344 -20.43417 -19.11806 -18.08123 -17.34966 -17.17899 -16.78973 -16.69049 -16.16555 -15.98594 -15.66707 -15.19262 -15.05765 -14.66552 -14.47320 -14.04821 -13.96748 -13.88755 -13.35105 -12.97834 -12.93920 -12.71331 -12.64084 -12.40487 -12.29166 -12.24177 -11.97128 -11.84011 -11.51766 -11.43921 -11.29022 -10.79755 -10.77483 -10.26136 -9.82879 -9.33758 -8.29325 -6.46498 1.42644 1.47000 1.55273 1.79040 2.28050 2.47729 2.91049 3.05292 3.37938 3.61036 3.67186 3.92256 3.98886 4.23494 4.28369 4.37977 4.41979 4.45373 4.54569 4.57631 4.64072 4.64633 4.81451 4.89914 4.98890 4.99371 5.05745 5.10548 5.12417 5.22136 5.23635 5.33926 5.48313 5.48606 5.68268 5.84403 5.95375 6.24764 6.54443 6.64802 6.94361 7.23231 7.52579 8.82806 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043740 B = 0.002960 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.998221 B = 9457.212184 C = 9545.153159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.390 6.390 3 C 0.113 3.887 4 C 0.038 3.962 5 N -0.683 5.683 6 C 0.057 3.943 7 C 0.491 3.509 8 O -0.592 6.592 9 N -0.709 5.709 10 C 0.268 3.732 11 C -0.557 4.557 12 H 0.085 0.915 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.261 1.261 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.144 4.144 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.117 4.117 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.343 0.657 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.409 0.591 32 H -0.014 1.014 33 H -0.016 1.016 34 H 0.269 0.731 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 9.974 23.939 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.310 6.310 3 C 0.073 3.927 4 C -0.091 4.091 5 N -0.316 5.316 6 C -0.075 4.075 7 C 0.278 3.722 8 O -0.473 6.473 9 N -0.360 5.360 10 C 0.145 3.855 11 C -0.595 4.595 12 H 0.103 0.897 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.182 4.182 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.155 4.155 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.251 8.526 23.892 25.468 hybrid contribution 0.088 0.866 -1.312 1.575 sum -2.163 9.392 22.580 24.551 Atomic orbital electron populations 1.22792 0.80985 1.02711 1.00341 1.87974 1.20378 1.27771 1.94829 1.22310 0.93641 0.83214 0.93512 1.22698 1.02157 0.95572 0.88654 1.59996 1.17913 1.52966 1.00758 1.21764 1.02783 0.95929 0.86982 1.21474 0.79532 0.85082 0.86114 1.90653 1.40655 1.28423 1.87586 1.46171 1.52731 1.30699 1.06351 1.18501 0.93854 0.91176 0.82009 1.21603 1.33603 1.12794 0.91487 0.89684 1.26102 0.95323 0.95501 1.02809 1.70139 1.39878 1.23018 1.24031 0.85189 0.79011 0.78440 0.76465 1.18542 1.21148 1.18604 1.22967 0.99417 1.01247 0.94592 1.22448 0.93734 1.01933 0.97451 1.22369 0.98250 1.01088 0.94013 1.22171 0.92652 1.01494 0.99160 0.90314 0.92569 0.93810 0.92359 0.89494 0.83708 0.86271 0.89680 0.75561 0.99630 0.99822 0.92242 0.89163 0.90509 0.92122 0.89732 0.91094 0.90293 0.92253 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.32 113.37 1.17 1.74 16 2 O -0.39 -10.06 10.14 -148.98 -1.51 -11.57 16 3 C 0.11 2.25 0.77 -10.07 -0.01 2.24 16 4 C 0.04 0.73 3.84 86.30 0.33 1.06 16 5 N -0.68 -18.67 5.92 -517.93 -3.07 -21.73 16 6 C 0.06 1.52 6.16 85.56 0.53 2.05 16 7 C 0.49 19.90 7.87 87.66 0.69 20.59 16 8 O -0.59 -30.44 16.20 -3.04 -0.05 -30.49 16 9 N -0.71 -30.09 5.55 -466.78 -2.59 -32.68 16 10 C 0.27 14.96 5.43 85.63 0.46 15.42 16 11 C -0.56 -30.53 9.28 25.60 0.24 -30.29 16 12 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 15 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 17 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 C -0.14 -2.03 5.91 31.70 0.19 -1.84 16 20 C -0.12 -1.57 6.91 31.91 0.22 -1.35 16 21 C -0.12 -1.75 6.83 31.67 0.22 -1.53 16 22 C -0.12 -2.37 5.84 31.32 0.18 -2.19 16 23 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.06 0.86 6.41 -2.39 -0.02 0.85 16 25 H 0.04 0.91 6.26 -2.39 -0.01 0.90 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.49 6.54 -2.39 -0.02 1.47 16 28 H 0.34 10.31 6.97 -89.69 -0.62 9.69 16 29 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.41 14.00 8.32 -92.71 -0.77 13.23 16 32 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.09 0.97 7.85 -2.39 -0.02 0.95 16 36 H 0.08 1.05 6.17 -2.39 -0.01 1.03 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 42 H 0.07 1.38 6.63 -2.39 -0.02 1.36 16 Total: -1.00 -74.88 336.98 -0.60 -75.49 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.38 Total: 26.77 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 4.68 Total: 6.47 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -5.37 Total: -111.11 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.56 Total: -42.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -74.88 -0.60 -75.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310564101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.530 kcal (2) G-P(sol) polarization free energy of solvation -74.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds