Wall clock time and date at job start Mon Mar 30 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46718 * 2 1 4 4 C 1.34773 * 120.00037 * 269.99780 * 3 2 1 5 5 O 1.21591 * 120.00284 * 180.02562 * 4 3 2 6 6 N 1.34784 * 120.00106 * 0.02562 * 4 3 2 7 7 C 1.46498 * 119.99714 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46760 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47246 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46884 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00616 * 359.97438 * 10 9 8 12 12 C 1.37888 * 119.99912 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99575 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00071 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47065 * 59.99932 * 14 12 10 16 16 H 1.48498 * 109.46659 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46738 * 299.99481 * 14 12 10 18 18 C 1.46502 * 119.99844 * 90.00744 * 3 2 1 19 19 H 1.08992 * 110.43644 * 1.08102 * 18 3 2 20 20 C 1.54807 * 110.49150 * 123.77862 * 18 3 2 21 21 C 1.54994 * 102.09860 * 139.55199 * 20 18 3 22 22 O 1.44586 * 103.58334 * 323.05571 * 21 20 18 23 23 C 1.43746 * 106.86832 * 39.87548 * 22 21 20 24 24 H 1.08998 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47248 * 299.99604 * 1 2 3 26 26 H 1.08997 * 109.47231 * 59.99685 * 1 2 3 27 27 H 1.08996 * 109.46931 * 240.00242 * 2 1 3 28 28 H 1.09002 * 109.47490 * 119.99629 * 2 1 3 29 29 H 0.97003 * 119.99566 * 0.02562 * 6 4 3 30 30 H 1.08995 * 109.47086 * 299.99634 * 7 6 4 31 31 H 1.08996 * 109.47415 * 60.00441 * 7 6 4 32 32 H 1.09003 * 109.46827 * 299.99668 * 8 7 6 33 33 H 1.09000 * 109.47534 * 59.99393 * 8 7 6 34 34 H 1.09003 * 109.46814 * 299.99526 * 9 8 7 35 35 H 1.08996 * 109.47294 * 59.99697 * 9 8 7 36 36 H 0.96999 * 119.99842 * 179.97438 * 13 12 10 37 37 H 1.09007 * 110.90637 * 257.75581 * 20 18 3 38 38 H 1.09003 * 110.91046 * 21.31626 * 20 18 3 39 39 H 1.08999 * 110.61668 * 81.47212 * 21 20 18 40 40 H 1.08994 * 110.62187 * 204.31922 * 21 20 18 41 41 H 1.09002 * 109.87826 * 214.17174 * 23 22 21 42 42 H 1.08996 * 109.87812 * 93.17072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6485 3.1628 -1.1672 6 7 2.0178 1.3814 -2.3344 7 6 2.2615 2.0723 -3.6031 8 6 1.9291 1.1352 -4.7661 9 6 2.1841 1.8564 -6.0911 10 6 1.8573 0.9333 -7.2364 11 1 1.5035 -0.0679 -7.0391 12 6 2.0100 1.3667 -8.5365 13 7 2.4403 2.5861 -8.7767 14 14 1.6055 0.2222 -9.9563 15 1 0.1780 -0.1793 -9.8773 16 1 1.8530 0.9223 -11.2423 17 1 2.4649 -0.9864 -9.8779 18 6 2.2625 2.0718 1.2688 19 1 2.0495 1.4110 2.1089 20 6 3.7219 2.5839 1.3348 21 6 3.5476 3.9786 1.9881 22 8 2.3120 4.4682 1.4186 23 6 1.4088 3.3516 1.3592 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6938 0.4671 -2.3344 30 1 1.6312 2.9596 -3.6605 31 1 3.3094 2.3665 -3.6612 32 1 2.5591 0.2476 -4.7089 33 1 0.8811 0.8413 -4.7078 34 1 1.5544 2.7443 -6.1485 35 1 3.2322 2.1500 -6.1491 36 1 2.5481 2.8909 -9.6913 37 1 4.3340 1.9347 1.9611 38 1 4.1488 2.6723 0.3358 39 1 3.4591 3.8871 3.0706 40 1 4.3797 4.6320 1.7260 41 1 0.7727 3.4359 0.4781 42 1 0.7939 3.3240 2.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361985984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:38 Heat of formation + Delta-G solvation = -79.330533 kcal Electronic energy + Delta-G solvation = -21286.006742 eV Core-core repulsion = 18073.125643 eV Total energy + Delta-G solvation = -3212.881099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70320 -38.60436 -35.99651 -35.32499 -33.32384 -32.00866 -31.02411 -30.00964 -28.54855 -26.50184 -23.80267 -23.15086 -22.69418 -21.76589 -20.60542 -19.33478 -17.79241 -16.95345 -16.28269 -16.16234 -15.64098 -15.50595 -14.88302 -14.50621 -14.39327 -14.13932 -13.92963 -13.70525 -13.12527 -12.87984 -12.56686 -12.26156 -11.92384 -11.78523 -11.72844 -11.63028 -11.52253 -11.38367 -11.14205 -10.87381 -10.68149 -10.60631 -9.85306 -9.81706 -9.69316 -9.39018 -9.12022 -8.88511 -8.48249 -8.35592 -6.00307 -4.03528 2.62015 3.32582 3.34841 3.37403 3.39156 3.91015 3.99883 4.44149 4.45360 4.60546 4.78047 4.81621 4.98434 5.01174 5.05832 5.10381 5.35206 5.36033 5.51279 5.51979 5.57670 5.66374 5.72519 5.77638 5.83957 5.92524 6.03029 6.21172 6.45579 6.59819 6.64532 6.80337 6.87259 7.03115 7.04799 7.65204 7.78576 7.98563 8.10143 8.39433 8.78994 9.02968 9.60381 11.10941 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.003391 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.786153 B = 8254.920016 C = 8835.893249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.630 5.630 4 C 0.697 3.303 5 O -0.571 6.571 6 N -0.742 5.742 7 C 0.135 3.865 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.137 3.863 19 H 0.099 0.901 20 C -0.166 4.166 21 C 0.053 3.947 22 O -0.361 6.361 23 C 0.047 3.953 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.392 0.608 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -5.520 23.847 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.369 5.369 4 C 0.399 3.601 5 O -0.447 6.447 6 N -0.398 5.398 7 C 0.011 3.989 8 C -0.158 4.158 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.032 3.968 19 H 0.117 0.883 20 C -0.204 4.204 21 C -0.024 4.024 22 O -0.279 6.279 23 C -0.031 4.031 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.983 -4.309 23.591 24.001 hybrid contribution -0.394 -1.402 -0.793 1.659 sum -1.376 -5.711 22.797 23.542 Atomic orbital electron populations 1.22264 0.95792 1.02393 1.02894 1.21522 0.94562 0.82612 1.03072 1.47276 1.71024 1.14096 1.04456 1.16000 0.79150 0.84729 0.80261 1.90992 1.51655 1.16045 1.86003 1.45598 1.71556 1.17459 1.05199 1.21496 1.01093 0.95873 0.80394 1.21882 1.00381 0.98163 0.95340 1.19017 0.97436 0.95713 0.89152 1.21168 1.44625 0.99388 0.90968 0.92737 1.25033 0.95274 0.95140 0.99001 1.69959 1.46241 1.16719 1.20312 0.86643 0.78847 0.80836 0.81567 1.20255 1.21273 1.20266 1.22236 0.95175 0.94260 0.85173 0.88295 1.23528 0.96326 0.96805 1.03777 1.23417 0.88195 0.94597 0.96186 1.88984 1.24000 1.31233 1.83718 1.23412 0.92847 0.85533 1.01352 0.91383 0.92318 0.91969 0.90521 0.90309 0.77312 0.91973 0.92021 0.92891 0.92858 0.96239 0.96262 0.92868 0.90645 0.88455 0.92746 0.89123 0.89608 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.11 0.82 5.88 -4.04 -0.02 0.80 16 3 N -0.63 -7.05 2.46 -170.05 -0.42 -7.47 16 4 C 0.70 10.75 7.17 -86.91 -0.62 10.12 16 5 O -0.57 -11.04 13.20 4.27 0.06 -10.98 16 6 N -0.74 -11.05 5.42 -65.22 -0.35 -11.41 16 7 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 8 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 13 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 C 0.14 1.38 3.53 -66.40 -0.23 1.14 16 19 H 0.10 0.68 7.85 -51.93 -0.41 0.27 16 20 C -0.17 -1.77 6.32 -24.73 -0.16 -1.93 16 21 C 0.05 0.57 7.72 38.21 0.29 0.87 16 22 O -0.36 -5.26 11.20 -36.25 -0.41 -5.67 16 23 C 0.05 0.56 6.51 37.73 0.25 0.81 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.58 6.36 -51.93 -0.33 0.25 16 28 H 0.08 0.44 7.94 -51.93 -0.41 0.03 16 29 H 0.39 4.81 6.20 -40.82 -0.25 4.56 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.38 6.15 -51.93 -0.32 1.06 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.23 7.21 -51.93 -0.37 0.85 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -33.66 337.88 -8.28 -41.94 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.13 Total: 0.34 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.83 Total: -2.13 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.04 Total: -45.12 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.35 Total: -16.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.66 -8.28 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361985984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.392 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds