Wall clock time and date at job start Mon Mar 30 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46718 * 2 1 4 4 C 1.34773 * 120.00037 * 269.99780 * 3 2 1 5 5 O 1.21591 * 120.00284 * 180.02562 * 4 3 2 6 6 N 1.34784 * 120.00106 * 0.02562 * 4 3 2 7 7 C 1.46498 * 119.99714 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46760 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47246 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46884 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00616 * 359.97438 * 10 9 8 12 12 C 1.37888 * 119.99912 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99575 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00071 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47065 * 59.99932 * 14 12 10 16 16 H 1.48498 * 109.46659 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46738 * 299.99481 * 14 12 10 18 18 C 1.46502 * 119.99844 * 90.00744 * 3 2 1 19 19 H 1.08992 * 110.43644 * 1.08102 * 18 3 2 20 20 C 1.54807 * 110.49150 * 123.77862 * 18 3 2 21 21 C 1.54994 * 102.09860 * 139.55199 * 20 18 3 22 22 O 1.44586 * 103.58334 * 323.05571 * 21 20 18 23 23 C 1.43746 * 106.86832 * 39.87548 * 22 21 20 24 24 H 1.08998 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47248 * 299.99604 * 1 2 3 26 26 H 1.08997 * 109.47231 * 59.99685 * 1 2 3 27 27 H 1.08996 * 109.46931 * 240.00242 * 2 1 3 28 28 H 1.09002 * 109.47490 * 119.99629 * 2 1 3 29 29 H 0.97003 * 119.99566 * 0.02562 * 6 4 3 30 30 H 1.08995 * 109.47086 * 299.99634 * 7 6 4 31 31 H 1.08996 * 109.47415 * 60.00441 * 7 6 4 32 32 H 1.09003 * 109.46827 * 299.99668 * 8 7 6 33 33 H 1.09000 * 109.47534 * 59.99393 * 8 7 6 34 34 H 1.09003 * 109.46814 * 299.99526 * 9 8 7 35 35 H 1.08996 * 109.47294 * 59.99697 * 9 8 7 36 36 H 0.96999 * 119.99842 * 179.97438 * 13 12 10 37 37 H 1.09007 * 110.90637 * 257.75581 * 20 18 3 38 38 H 1.09003 * 110.91046 * 21.31626 * 20 18 3 39 39 H 1.08999 * 110.61668 * 81.47212 * 21 20 18 40 40 H 1.08994 * 110.62187 * 204.31922 * 21 20 18 41 41 H 1.09002 * 109.87826 * 214.17174 * 23 22 21 42 42 H 1.08996 * 109.87812 * 93.17072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6485 3.1628 -1.1672 6 7 2.0178 1.3814 -2.3344 7 6 2.2615 2.0723 -3.6031 8 6 1.9291 1.1352 -4.7661 9 6 2.1841 1.8564 -6.0911 10 6 1.8573 0.9333 -7.2364 11 1 1.5035 -0.0679 -7.0391 12 6 2.0100 1.3667 -8.5365 13 7 2.4403 2.5861 -8.7767 14 14 1.6055 0.2222 -9.9563 15 1 0.1780 -0.1793 -9.8773 16 1 1.8530 0.9223 -11.2423 17 1 2.4649 -0.9864 -9.8779 18 6 2.2625 2.0718 1.2688 19 1 2.0495 1.4110 2.1089 20 6 3.7219 2.5839 1.3348 21 6 3.5476 3.9786 1.9881 22 8 2.3120 4.4682 1.4186 23 6 1.4088 3.3516 1.3592 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6938 0.4671 -2.3344 30 1 1.6312 2.9596 -3.6605 31 1 3.3094 2.3665 -3.6612 32 1 2.5591 0.2476 -4.7089 33 1 0.8811 0.8413 -4.7078 34 1 1.5544 2.7443 -6.1485 35 1 3.2322 2.1500 -6.1491 36 1 2.5481 2.8909 -9.6913 37 1 4.3340 1.9347 1.9611 38 1 4.1488 2.6723 0.3358 39 1 3.4591 3.8871 3.0706 40 1 4.3797 4.6320 1.7260 41 1 0.7727 3.4359 0.4781 42 1 0.7939 3.3240 2.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361985984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:37 Heat of formation + Delta-G solvation = -102.753644 kcal Electronic energy + Delta-G solvation = -21287.022445 eV Core-core repulsion = 18073.125643 eV Total energy + Delta-G solvation = -3213.896802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73793 -39.64619 -37.12104 -36.74136 -35.18778 -33.24903 -32.43117 -30.84599 -29.58994 -28.23119 -25.25256 -24.10449 -23.70716 -22.80505 -22.26694 -20.57891 -18.81275 -18.47395 -17.79395 -17.10852 -16.77555 -16.67225 -16.46891 -15.89719 -15.79955 -15.07985 -15.01634 -14.71700 -14.23119 -14.01460 -13.82687 -13.73480 -13.49060 -13.18326 -12.70207 -12.62457 -12.55490 -12.47296 -12.42332 -12.34604 -12.13438 -11.85535 -11.67579 -11.54366 -11.24325 -10.89245 -10.61747 -10.54855 -10.15016 -9.50527 -8.19114 -6.31141 1.41594 1.45143 1.52885 1.61373 2.15936 2.42090 2.94005 3.08348 3.14380 3.63432 3.92530 3.98411 4.11121 4.17106 4.21257 4.23426 4.33150 4.37947 4.49188 4.54228 4.64552 4.75637 4.83135 4.86698 4.93462 4.94407 4.96888 5.01736 5.14676 5.17177 5.36814 5.47431 5.55708 5.67248 5.69851 5.83538 5.90010 6.03459 6.22087 6.85731 7.00652 7.38421 7.61697 8.92941 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.003391 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.786153 B = 8254.920016 C = 8835.893249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.620 5.620 4 C 0.692 3.308 5 O -0.617 6.617 6 N -0.733 5.733 7 C 0.151 3.849 8 C -0.099 4.099 9 C 0.024 3.976 10 C -0.542 4.542 11 H 0.068 0.932 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.264 1.264 18 C 0.136 3.864 19 H 0.148 0.852 20 C -0.163 4.163 21 C 0.048 3.952 22 O -0.403 6.403 23 C 0.043 3.957 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.407 0.593 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.066 0.934 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 -8.693 25.767 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.357 5.357 4 C 0.393 3.607 5 O -0.497 6.497 6 N -0.391 5.391 7 C 0.027 3.973 8 C -0.136 4.136 9 C -0.013 4.013 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.189 1.189 18 C 0.031 3.969 19 H 0.166 0.834 20 C -0.201 4.201 21 C -0.028 4.028 22 O -0.323 6.323 23 C -0.035 4.035 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.693 -7.547 25.560 26.704 hybrid contribution -0.171 -0.372 -1.322 1.384 sum -1.864 -7.919 24.238 25.567 Atomic orbital electron populations 1.22227 0.95288 1.03449 1.01934 1.21846 0.94896 0.80522 1.04962 1.47332 1.69760 1.15300 1.03339 1.16219 0.78835 0.84296 0.81322 1.90967 1.53609 1.18291 1.86813 1.45256 1.71755 1.17979 1.04096 1.21015 0.99514 0.95106 0.81703 1.21573 1.01458 0.97960 0.92654 1.18930 0.95016 0.95130 0.92265 1.21650 1.44347 1.00169 0.91837 0.91419 1.26056 0.94983 0.96795 1.02335 1.70118 1.47516 1.18930 1.21031 0.85443 0.79228 0.78645 0.77380 1.18956 1.21209 1.18907 1.22539 0.94246 0.94322 0.85750 0.83417 1.23478 0.97087 0.97524 1.02046 1.23624 0.86754 0.94455 0.97967 1.88928 1.25676 1.33110 1.84538 1.23514 0.92817 0.85948 1.01179 0.89260 0.91830 0.94437 0.90333 0.86748 0.75488 0.94028 0.93771 0.91353 0.91498 0.99136 0.99032 0.92809 0.87228 0.92665 0.89250 0.89984 0.93079 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 71.98 0.74 -1.23 16 2 C 0.10 1.20 5.88 86.38 0.51 1.71 16 3 N -0.62 -12.79 2.46 -810.19 -2.00 -14.78 16 4 C 0.69 21.53 7.17 179.05 1.28 22.82 16 5 O -0.62 -25.09 13.20 -3.03 -0.04 -25.13 16 6 N -0.73 -21.83 5.42 -478.53 -2.59 -24.42 16 7 C 0.15 5.71 5.67 86.38 0.49 6.20 16 8 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 9 C 0.02 1.30 4.97 29.85 0.15 1.44 16 10 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 11 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 12 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 13 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 14 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 C 0.14 2.38 3.53 45.98 0.16 2.54 16 19 H 0.15 1.21 7.85 -2.39 -0.02 1.19 16 20 C -0.16 -3.22 6.32 31.89 0.20 -3.02 16 21 C 0.05 1.00 7.72 72.66 0.56 1.56 16 22 O -0.40 -11.88 11.20 -148.01 -1.66 -13.53 16 23 C 0.04 1.00 6.51 72.36 0.47 1.47 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.94 6.36 -2.39 -0.02 0.93 16 28 H 0.11 0.66 7.94 -2.39 -0.02 0.64 16 29 H 0.41 9.45 6.20 -92.71 -0.58 8.88 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.05 1.59 6.15 -2.39 -0.01 1.58 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.51 7.21 -2.39 -0.02 1.49 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.59 337.88 1.86 -75.73 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.42 Total: 14.16 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.42 Total: -0.39 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -4.31 Total: -96.87 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.70 Total: -38.67 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -77.59 1.86 -75.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361985984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.025 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds