Wall clock time and date at job start Mon Mar 30 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46846 * 111.00371 * 2 1 4 4 C 1.53034 * 109.52646 * 185.84039 * 3 2 1 5 5 C 1.53117 * 109.28040 * 300.81981 * 4 3 2 6 6 C 1.52995 * 109.52360 * 297.68815 * 5 4 3 7 7 C 1.52997 * 109.52231 * 177.56030 * 5 4 3 8 8 N 1.46904 * 109.46950 * 180.13086 * 7 5 4 9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 7 11 11 O 1.42904 * 109.47396 * 64.99580 * 10 9 8 12 12 C 1.42896 * 114.00313 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46851 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00616 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99887 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99815 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47378 * 89.99191 * 17 15 13 19 19 H 1.48498 * 109.47222 * 209.99557 * 17 15 13 20 20 H 1.48506 * 109.46855 * 329.99448 * 17 15 13 21 21 C 1.53121 * 109.21052 * 57.62388 * 5 4 3 22 22 C 1.46846 * 111.00216 * 124.21273 * 2 1 3 23 23 H 1.08998 * 109.46641 * 59.99890 * 1 2 3 24 24 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46831 * 299.99842 * 1 2 3 26 26 H 1.08998 * 109.46283 * 65.82016 * 3 2 1 27 27 H 1.09001 * 109.45396 * 305.85256 * 3 2 1 28 28 H 1.09004 * 109.50397 * 180.87932 * 4 3 2 29 29 H 1.08998 * 109.50497 * 60.76427 * 4 3 2 30 30 H 1.09004 * 109.47192 * 299.87138 * 6 5 4 31 31 H 1.09003 * 109.47213 * 59.87241 * 6 5 4 32 32 H 1.09001 * 109.47505 * 179.86813 * 6 5 4 33 33 H 1.08995 * 109.47319 * 60.13015 * 7 5 4 34 34 H 1.09003 * 109.47435 * 300.12340 * 7 5 4 35 35 H 1.00908 * 110.99583 * 303.94989 * 8 7 5 36 36 H 1.09002 * 109.47043 * 299.99792 * 9 8 7 37 37 H 1.09001 * 109.47354 * 59.99854 * 9 8 7 38 38 H 1.09001 * 109.47630 * 184.99901 * 10 9 8 39 39 H 1.09004 * 109.47346 * 305.00031 * 10 9 8 40 40 H 1.08999 * 109.46799 * 300.00326 * 12 11 10 41 41 H 1.08998 * 109.47187 * 59.99969 * 12 11 10 42 42 H 0.97003 * 120.00101 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.50548 * 62.32039 * 21 5 4 44 44 H 1.09000 * 109.50558 * 182.43687 * 21 5 4 45 45 H 1.09003 * 109.46142 * 294.17550 * 22 2 1 46 46 H 1.08997 * 109.46569 * 54.15554 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.7973 1.2374 2.3359 7 6 5.6361 0.4449 0.8404 8 7 6.2109 -0.3227 1.9532 9 6 7.6698 -0.4314 1.8197 10 6 8.2310 -1.2351 2.9945 11 8 7.7443 -2.5771 2.9293 12 6 8.2109 -3.4166 3.9873 13 6 7.6392 -4.8008 3.8195 14 1 6.9846 -5.0177 2.9884 15 6 7.9510 -5.7903 4.7278 16 7 8.7477 -5.5261 5.7402 17 14 7.2417 -7.5059 4.5203 18 1 8.1606 -8.3242 3.6889 19 1 7.0828 -8.1404 5.8534 20 1 5.9178 -7.4168 3.8535 21 6 3.5184 -0.8716 1.0223 22 6 1.9953 -0.7708 1.1337 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7325 1.8608 0.9375 27 1 1.5635 1.9256 -0.8330 28 1 3.9100 2.3512 -0.1310 29 1 3.7814 0.8568 -1.0906 30 1 4.2232 2.2408 2.3284 31 1 2.7162 1.3025 2.4590 32 1 4.2232 0.6680 3.1620 33 1 6.0625 1.4480 0.8326 34 1 5.8644 -0.0543 -0.1014 35 1 5.9587 0.0842 2.8415 36 1 7.9124 -0.9364 0.8847 37 1 8.1099 0.5658 1.8189 38 1 9.3198 -1.2406 2.9439 39 1 7.9131 -0.7785 3.9319 40 1 9.2993 -3.4674 3.9577 41 1 7.8924 -3.0052 4.9451 42 1 8.9674 -6.2223 6.3790 43 1 3.7816 -1.3847 0.0974 44 1 3.9103 -1.4295 1.8728 45 1 1.7325 -0.2709 2.0660 46 1 1.5637 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385183761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:08 Heat of formation + Delta-G solvation = -78.126177 kcal Electronic energy + Delta-G solvation = -21449.520723 eV Core-core repulsion = 18372.524943 eV Total energy + Delta-G solvation = -3076.995780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76944 -38.77083 -37.28168 -35.17039 -34.54689 -31.78424 -30.75446 -29.28195 -28.54351 -27.11358 -25.00253 -24.45893 -24.05570 -22.76931 -22.13061 -19.17867 -18.62148 -17.61664 -17.07757 -16.81226 -16.41496 -16.04999 -15.96767 -15.66489 -15.60297 -15.28669 -14.87108 -14.62282 -14.15048 -14.00281 -13.56906 -13.29847 -13.27770 -12.97093 -12.92462 -12.79774 -12.60068 -12.53438 -12.50106 -12.38116 -12.22815 -11.96455 -11.81827 -11.37468 -11.25174 -11.09838 -11.04149 -10.84401 -10.17271 -9.21553 -9.14702 -8.30886 -6.42558 1.40106 1.43087 1.55428 2.36159 3.02741 3.05086 3.20600 3.29342 3.79455 3.85332 3.92907 4.23594 4.27318 4.28755 4.34022 4.38516 4.48115 4.49957 4.57651 4.63443 4.66688 4.71069 4.77104 4.80439 4.84744 4.87089 4.88905 5.01566 5.02018 5.02518 5.12575 5.15199 5.19891 5.20752 5.33625 5.52246 5.57066 5.57745 5.99072 6.15137 6.18822 6.21715 6.52178 6.60404 6.88579 7.29760 8.81557 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.003758 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.474581 B = 7448.196932 C = 8559.352895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.056 3.944 4 C -0.101 4.101 5 C -0.053 4.053 6 C -0.143 4.143 7 C 0.076 3.924 8 N -0.694 5.694 9 C 0.076 3.924 10 C 0.055 3.945 11 O -0.396 6.396 12 C 0.209 3.791 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.982 3.018 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.266 1.266 21 C -0.093 4.093 22 C 0.057 3.943 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.340 0.660 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.038 0.962 40 H -0.017 1.017 41 H -0.017 1.017 42 H 0.270 0.730 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 17.456 -10.731 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.071 4.071 4 C -0.139 4.139 5 C -0.054 4.054 6 C -0.200 4.200 7 C -0.053 4.053 8 N -0.327 5.327 9 C -0.053 4.053 10 C -0.022 4.022 11 O -0.315 6.315 12 C 0.134 3.866 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.805 3.195 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.190 1.190 21 C -0.131 4.131 22 C -0.071 4.071 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.001 0.999 41 H 0.001 0.999 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.095 16.488 -11.443 23.964 hybrid contribution 0.257 0.343 1.506 1.566 sum -12.838 16.831 -9.937 23.385 Atomic orbital electron populations 1.22383 0.86520 1.02329 1.01071 1.61933 1.08359 1.14411 1.43498 1.22137 0.95412 0.88665 1.00893 1.21588 0.94356 1.00307 0.97652 1.20541 0.93697 0.95155 0.95995 1.21941 1.01585 1.00190 0.96305 1.21963 0.93842 0.95423 0.94094 1.60301 1.09927 1.56658 1.05848 1.21853 0.88129 0.97681 0.97668 1.22596 0.97175 0.84076 0.98361 1.87916 1.72523 1.20716 1.50368 1.19783 0.92414 0.89425 0.84988 1.21385 1.30172 0.95122 1.11595 0.92268 1.25952 0.95220 1.03942 0.94098 1.70070 1.36649 1.35681 1.14720 0.85201 0.78981 0.77382 0.77960 1.19237 1.19800 1.18995 1.21416 0.93483 0.96562 1.01594 1.22103 0.95683 0.97855 0.91445 0.90310 0.91455 0.95550 0.94470 0.89768 0.89937 0.91723 0.91646 0.92402 0.93198 0.94036 0.91933 0.84001 0.91231 0.91563 0.93562 0.94371 0.99940 0.99939 0.92078 0.93092 0.92320 0.94707 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.59 127.69 1.22 1.62 16 2 N -0.56 -11.11 4.91 -922.59 -4.53 -15.64 16 3 C 0.06 0.93 5.22 86.32 0.45 1.38 16 4 C -0.10 -1.71 4.88 30.64 0.15 -1.56 16 5 C -0.05 -1.10 0.59 -52.10 -0.03 -1.13 16 6 C -0.14 -2.70 7.57 71.98 0.54 -2.16 16 7 C 0.08 1.71 4.65 86.30 0.40 2.11 16 8 N -0.69 -19.88 5.72 -513.89 -2.94 -22.82 16 9 C 0.08 2.22 6.07 86.30 0.52 2.74 16 10 C 0.06 2.08 6.22 71.98 0.45 2.53 16 11 O -0.40 -20.09 10.27 -148.98 -1.53 -21.62 16 12 C 0.21 12.16 5.69 71.24 0.41 12.56 16 13 C -0.55 -33.57 9.43 25.60 0.24 -33.33 16 14 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 17 Si 0.98 45.51 29.54 68.60 2.03 47.53 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C -0.09 -2.38 4.69 30.65 0.14 -2.24 16 22 C 0.06 1.29 5.22 86.33 0.45 1.74 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.05 8.09 -2.39 -0.02 1.04 16 25 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.04 0.60 6.51 -2.39 -0.02 0.58 16 27 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.06 1.06 4.93 -2.39 -0.01 1.05 16 32 H 0.05 1.08 6.58 -2.39 -0.02 1.06 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.34 9.29 6.78 -89.69 -0.61 8.68 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.83 7.69 -2.39 -0.02 1.81 16 45 H 0.03 0.77 6.52 -2.39 -0.02 0.75 16 46 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -68.33 353.75 -0.96 -69.30 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.31 Total: 15.01 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 5.41 Total: -14.92 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -7.19 Total: -95.30 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.53 Total: -21.62 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.33 -0.96 -69.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385183761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.830 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds