Wall clock time and date at job start Mon Mar 30 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99612 * 2 1 4 4 C 1.52998 * 109.46958 * 269.99699 * 3 2 1 5 5 H 1.09002 * 110.33689 * 307.25326 * 4 3 2 6 6 C 1.54477 * 110.37406 * 185.00050 * 4 3 2 7 7 C 1.54506 * 104.06422 * 217.19167 * 6 4 3 8 8 C 1.54479 * 104.06550 * 0.02562 * 7 6 4 9 9 O 1.44423 * 104.80031 * 23.97754 * 8 7 6 10 10 C 1.34770 * 119.99953 * 179.97438 * 2 1 3 11 11 O 1.21284 * 119.99611 * 180.02562 * 10 2 1 12 12 C 1.50699 * 120.00651 * 0.02562 * 10 2 1 13 13 H 1.09000 * 109.46438 * 319.99712 * 12 10 2 14 14 N 1.46897 * 109.47303 * 200.00095 * 12 10 2 15 15 C 1.52994 * 109.47013 * 79.99298 * 12 10 2 16 16 C 1.52996 * 109.47119 * 185.00236 * 15 12 10 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 H 1.08998 * 109.47099 * 269.99905 * 1 2 3 26 26 H 1.08998 * 109.47374 * 30.00389 * 1 2 3 27 27 H 1.09005 * 109.46865 * 150.00155 * 1 2 3 28 28 H 1.09004 * 109.47587 * 29.99740 * 3 2 1 29 29 H 1.09003 * 109.47008 * 150.00096 * 3 2 1 30 30 H 1.08999 * 110.51332 * 335.83820 * 6 4 3 31 31 H 1.08994 * 110.51124 * 98.41091 * 6 4 3 32 32 H 1.09008 * 110.51078 * 118.64780 * 7 6 4 33 33 H 1.09003 * 110.51545 * 241.35007 * 7 6 4 34 34 H 1.09002 * 110.37044 * 142.80852 * 8 7 6 35 35 H 1.08991 * 110.37119 * 265.03829 * 8 7 6 36 36 H 1.00893 * 110.99633 * 176.04555 * 14 12 10 37 37 H 1.00906 * 110.99511 * 299.99380 * 14 12 10 38 38 H 1.09004 * 109.46806 * 65.00499 * 15 12 10 39 39 H 1.09000 * 109.47828 * 305.00803 * 15 12 10 40 40 H 1.09004 * 109.47066 * 60.00422 * 16 15 12 41 41 H 1.08994 * 109.47405 * 300.00252 * 16 15 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9285 0.9078 -2.0058 6 6 3.3314 2.9805 -1.4687 7 6 2.7606 3.8079 -2.6421 8 6 1.6038 2.9402 -3.1856 9 8 1.2144 2.1057 -2.0731 10 6 2.1388 -1.1671 0.0005 11 8 3.3517 -1.1671 0.0010 12 6 1.3855 -2.4723 0.0005 13 1 0.5218 -2.3932 0.6608 14 7 2.2676 -3.5469 0.4748 15 6 0.9140 -2.7890 -1.4201 16 6 0.0442 -4.0475 -1.4001 17 6 -0.4197 -4.3598 -2.7996 18 1 -0.1234 -3.7245 -3.6211 19 6 -1.2173 -5.4602 -3.0320 20 7 -1.5778 -6.2341 -2.0316 21 14 -1.7859 -5.8517 -4.7677 22 1 -0.7949 -6.7415 -5.4244 23 1 -3.1044 -6.5330 -4.7148 24 1 -1.9106 -4.5918 -5.5438 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5138 29 1 3.1499 1.1385 0.5138 30 1 3.2365 3.5300 -0.5322 31 1 4.3734 2.7201 -1.6537 32 1 2.3835 4.7666 -2.2856 33 1 3.5201 3.9569 -3.4096 34 1 0.7708 3.5704 -3.4972 35 1 1.9480 2.3281 -4.0191 36 1 1.7676 -4.4204 0.5453 37 1 3.0764 -3.6403 -0.1213 38 1 1.7795 -2.9557 -2.0614 39 1 0.3324 -1.9514 -1.8052 40 1 -0.8213 -3.8808 -0.7588 41 1 0.6258 -4.8851 -1.0151 42 1 -2.1392 -7.0081 -2.1951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424080471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:09 Heat of formation + Delta-G solvation = -94.058683 kcal Electronic energy + Delta-G solvation = -21535.119398 eV Core-core repulsion = 18321.599639 eV Total energy + Delta-G solvation = -3213.519760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12447 -39.11898 -35.60712 -35.30025 -32.84147 -32.30280 -30.81035 -29.86016 -27.07025 -26.66668 -25.19440 -23.40706 -22.12605 -21.16168 -20.40916 -18.80918 -17.29500 -16.76303 -16.27626 -16.19966 -15.57184 -15.51168 -14.75088 -14.48091 -14.28074 -14.03798 -13.83258 -13.37450 -12.96239 -12.56034 -12.47487 -12.25703 -12.11991 -12.07509 -11.94101 -11.64341 -11.47438 -11.25193 -11.02036 -10.89206 -10.85813 -10.66299 -9.93965 -9.91540 -9.83728 -9.24298 -9.14153 -8.52047 -8.41894 -8.14267 -6.06767 -4.09600 2.94147 3.13066 3.28428 3.35043 3.38395 3.78050 4.39587 4.41026 4.53415 4.71353 4.80565 4.94684 5.08459 5.23080 5.24706 5.29586 5.34350 5.40786 5.48191 5.56338 5.59198 5.61350 5.68600 5.71688 5.78015 5.82382 5.89393 6.00058 6.34293 6.56301 6.63391 6.72126 6.90803 7.43164 7.53978 7.62706 7.68517 7.90521 7.94627 8.33353 8.47242 8.96272 9.55158 11.04171 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.004561 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.671321 B = 6137.745050 C = 7105.343613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.125 3.875 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.148 4.148 7 C -0.154 4.154 8 C 0.043 3.957 9 O -0.366 6.366 10 C 0.526 3.474 11 O -0.542 6.542 12 C 0.075 3.925 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.354 0.646 37 H 0.344 0.656 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 18.660 2.416 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C 0.002 3.998 4 C 0.000 4.000 5 H 0.091 0.909 6 C -0.186 4.186 7 C -0.192 4.192 8 C -0.034 4.034 9 O -0.285 6.285 10 C 0.315 3.685 11 O -0.418 6.418 12 C -0.040 4.040 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.321 18.861 3.214 20.150 hybrid contribution -0.488 -0.596 -2.081 2.220 sum 5.833 18.265 1.132 19.207 Atomic orbital electron populations 1.21995 0.78836 1.04679 1.01593 1.47751 1.07425 1.05259 1.74377 1.21479 0.98549 0.85532 0.94259 1.23522 0.85098 0.96241 0.95158 0.90898 1.22914 1.00204 0.96136 0.99373 1.22926 0.98512 0.99562 0.98189 1.23381 0.97346 0.92478 0.90146 1.89157 1.27688 1.68059 1.43621 1.20949 0.87910 0.85396 0.74255 1.90608 1.14183 1.87427 1.49620 1.21489 0.95068 0.89172 0.98294 0.88546 1.58761 1.10933 1.09335 1.57252 1.22424 1.00638 1.01724 0.93072 1.19100 0.94004 0.90630 0.97488 1.21181 1.30870 1.10504 0.93518 0.92753 1.25004 0.96105 0.96166 0.96991 1.69953 1.36539 1.16041 1.30688 0.86592 0.78100 0.78505 0.84815 1.20652 1.21147 1.19881 0.92904 0.90380 0.89683 0.89948 0.88674 0.90507 0.90341 0.90745 0.90658 0.89198 0.92351 0.83122 0.84246 0.92809 0.92167 0.96306 0.96427 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 9.79 59.85 0.59 1.51 16 2 N -0.61 -8.95 2.87 -181.57 -0.52 -9.47 16 3 C 0.13 1.54 5.01 -4.04 -0.02 1.52 16 4 C 0.06 0.71 3.53 -25.96 -0.09 0.62 16 5 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 6 C -0.15 -1.33 6.63 -25.17 -0.17 -1.50 16 7 C -0.15 -1.23 7.09 -25.16 -0.18 -1.41 16 8 C 0.04 0.43 7.63 37.93 0.29 0.72 16 9 O -0.37 -4.70 10.50 -35.23 -0.37 -5.07 16 10 C 0.53 9.25 6.93 -10.99 -0.08 9.17 16 11 O -0.54 -10.81 15.83 5.55 0.09 -10.72 16 12 C 0.07 1.34 2.36 -68.87 -0.16 1.17 16 13 H 0.10 1.65 7.21 -51.93 -0.37 1.27 16 14 N -0.83 -14.88 8.94 -5.66 -0.05 -14.93 16 15 C -0.14 -2.82 4.45 -26.74 -0.12 -2.94 16 16 C 0.02 0.61 4.74 -27.88 -0.13 0.48 16 17 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 27 H 0.08 1.22 4.83 -51.93 -0.25 0.97 16 28 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.10 1.20 7.42 -51.93 -0.39 0.82 16 30 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.35 6.29 7.55 -39.30 -0.30 6.00 16 37 H 0.34 6.23 8.58 -39.29 -0.34 5.89 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.20 6.43 -51.93 -0.33 0.86 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -31.72 336.45 -7.44 -39.16 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.89 Total: 8.85 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.48 Total: -3.87 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.16 Total: -49.80 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.28 Total: -15.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.72 -7.44 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.901 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds