Wall clock time and date at job start Mon Mar 30 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99612 * 2 1 4 4 C 1.52998 * 109.46958 * 269.99699 * 3 2 1 5 5 H 1.09002 * 110.33689 * 307.25326 * 4 3 2 6 6 C 1.54477 * 110.37406 * 185.00050 * 4 3 2 7 7 C 1.54506 * 104.06422 * 217.19167 * 6 4 3 8 8 C 1.54479 * 104.06550 * 0.02562 * 7 6 4 9 9 O 1.44423 * 104.80031 * 23.97754 * 8 7 6 10 10 C 1.34770 * 119.99953 * 179.97438 * 2 1 3 11 11 O 1.21284 * 119.99611 * 180.02562 * 10 2 1 12 12 C 1.50699 * 120.00651 * 0.02562 * 10 2 1 13 13 H 1.09000 * 109.46438 * 319.99712 * 12 10 2 14 14 N 1.46897 * 109.47303 * 200.00095 * 12 10 2 15 15 C 1.52994 * 109.47013 * 79.99298 * 12 10 2 16 16 C 1.52996 * 109.47119 * 185.00236 * 15 12 10 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 H 1.08998 * 109.47099 * 269.99905 * 1 2 3 26 26 H 1.08998 * 109.47374 * 30.00389 * 1 2 3 27 27 H 1.09005 * 109.46865 * 150.00155 * 1 2 3 28 28 H 1.09004 * 109.47587 * 29.99740 * 3 2 1 29 29 H 1.09003 * 109.47008 * 150.00096 * 3 2 1 30 30 H 1.08999 * 110.51332 * 335.83820 * 6 4 3 31 31 H 1.08994 * 110.51124 * 98.41091 * 6 4 3 32 32 H 1.09008 * 110.51078 * 118.64780 * 7 6 4 33 33 H 1.09003 * 110.51545 * 241.35007 * 7 6 4 34 34 H 1.09002 * 110.37044 * 142.80852 * 8 7 6 35 35 H 1.08991 * 110.37119 * 265.03829 * 8 7 6 36 36 H 1.00893 * 110.99633 * 176.04555 * 14 12 10 37 37 H 1.00906 * 110.99511 * 299.99380 * 14 12 10 38 38 H 1.09004 * 109.46806 * 65.00499 * 15 12 10 39 39 H 1.09000 * 109.47828 * 305.00803 * 15 12 10 40 40 H 1.09004 * 109.47066 * 60.00422 * 16 15 12 41 41 H 1.08994 * 109.47405 * 300.00252 * 16 15 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 2.9285 0.9078 -2.0058 6 6 3.3314 2.9805 -1.4687 7 6 2.7606 3.8079 -2.6421 8 6 1.6038 2.9402 -3.1856 9 8 1.2144 2.1057 -2.0731 10 6 2.1388 -1.1671 0.0005 11 8 3.3517 -1.1671 0.0010 12 6 1.3855 -2.4723 0.0005 13 1 0.5218 -2.3932 0.6608 14 7 2.2676 -3.5469 0.4748 15 6 0.9140 -2.7890 -1.4201 16 6 0.0442 -4.0475 -1.4001 17 6 -0.4197 -4.3598 -2.7996 18 1 -0.1234 -3.7245 -3.6211 19 6 -1.2173 -5.4602 -3.0320 20 7 -1.5778 -6.2341 -2.0316 21 14 -1.7859 -5.8517 -4.7677 22 1 -0.7949 -6.7415 -5.4244 23 1 -3.1044 -6.5330 -4.7148 24 1 -1.9106 -4.5918 -5.5438 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5138 29 1 3.1499 1.1385 0.5138 30 1 3.2365 3.5300 -0.5322 31 1 4.3734 2.7201 -1.6537 32 1 2.3835 4.7666 -2.2856 33 1 3.5201 3.9569 -3.4096 34 1 0.7708 3.5704 -3.4972 35 1 1.9480 2.3281 -4.0191 36 1 1.7676 -4.4204 0.5453 37 1 3.0764 -3.6403 -0.1213 38 1 1.7795 -2.9557 -2.0614 39 1 0.3324 -1.9514 -1.8052 40 1 -0.8213 -3.8808 -0.7588 41 1 0.6258 -4.8851 -1.0151 42 1 -2.1392 -7.0081 -2.1951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424080471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:08 Heat of formation + Delta-G solvation = -116.458688 kcal Electronic energy + Delta-G solvation = -21536.090736 eV Core-core repulsion = 18321.599639 eV Total energy + Delta-G solvation = -3214.491097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33313 -40.13224 -37.18213 -36.59014 -34.86139 -33.10782 -31.76003 -31.68934 -28.45424 -27.83992 -26.67106 -24.92246 -23.08431 -22.15388 -21.95586 -20.14713 -18.80221 -18.20452 -17.72547 -17.20378 -16.72338 -16.52422 -16.39701 -15.93979 -15.68843 -15.47366 -14.83654 -14.64854 -14.49041 -14.11034 -13.76643 -13.51267 -13.36579 -13.32332 -13.06103 -12.87006 -12.66907 -12.62203 -12.51541 -12.36700 -12.05835 -11.78776 -11.72074 -11.53086 -11.31219 -10.81975 -10.67426 -10.56113 -9.73669 -9.62232 -8.21861 -6.32231 1.39225 1.39412 1.50228 1.55300 1.96031 2.39572 2.93671 3.11676 3.50178 3.65262 3.73747 3.78974 3.97029 4.08242 4.13438 4.19225 4.22318 4.30427 4.44540 4.53602 4.59895 4.64272 4.72376 4.79130 4.83350 4.87318 4.94633 4.97876 5.07861 5.09358 5.16257 5.45517 5.52435 5.63625 5.79653 5.85484 6.03604 6.20466 6.34111 6.46068 6.82288 7.12635 7.36735 8.88965 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.004561 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.671321 B = 6137.745050 C = 7105.343613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.609 5.609 3 C 0.122 3.878 4 C 0.058 3.942 5 H 0.040 0.960 6 C -0.143 4.143 7 C -0.146 4.146 8 C 0.034 3.966 9 O -0.387 6.387 10 C 0.524 3.476 11 O -0.571 6.571 12 C 0.081 3.919 13 H 0.107 0.893 14 N -0.829 5.829 15 C -0.120 4.120 16 C 0.033 3.967 17 C -0.545 4.545 18 H 0.052 0.948 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.353 0.647 37 H 0.343 0.657 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 20.526 2.075 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.000 4.000 4 C -0.001 4.001 5 H 0.058 0.942 6 C -0.182 4.182 7 C -0.184 4.184 8 C -0.043 4.043 9 O -0.306 6.306 10 C 0.312 3.688 11 O -0.450 6.450 12 C -0.034 4.034 13 H 0.125 0.875 14 N -0.360 5.360 15 C -0.160 4.160 16 C -0.005 4.005 17 C -0.583 4.583 18 H 0.070 0.930 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.032 20.763 2.871 21.811 hybrid contribution -0.433 -1.150 -1.973 2.324 sum 5.599 19.613 0.898 20.416 Atomic orbital electron populations 1.22090 0.77660 1.04354 1.03021 1.47822 1.08247 1.05275 1.72745 1.21688 0.98657 0.84858 0.94802 1.23426 0.85503 0.96858 0.94303 0.94220 1.22914 0.99688 0.94769 1.00792 1.22917 0.97948 0.99569 0.97968 1.23588 0.98846 0.92574 0.89279 1.89120 1.28214 1.68734 1.44552 1.20786 0.87504 0.86008 0.74507 1.90591 1.15207 1.87874 1.51321 1.21404 0.95513 0.89779 0.96690 0.87527 1.58777 1.10829 1.09364 1.57017 1.22150 0.99264 0.99822 0.94722 1.18948 0.93761 0.91966 0.95789 1.21582 1.31166 1.10780 0.94782 0.93006 1.25840 0.96164 0.95994 1.01101 1.70059 1.37146 1.16520 1.32795 0.85550 0.77769 0.78491 0.79869 1.20062 1.20474 1.19116 0.90556 0.89225 0.91433 0.87215 0.89054 0.88772 0.90041 0.89059 0.89467 0.87643 0.93219 0.83236 0.84400 0.94101 0.91826 0.97817 0.97874 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 9.79 127.77 1.25 2.96 16 2 N -0.61 -17.13 2.87 -846.74 -2.43 -19.56 16 3 C 0.12 2.82 5.01 86.38 0.43 3.26 16 4 C 0.06 1.35 3.53 31.10 0.11 1.46 16 5 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.14 -2.29 6.63 31.61 0.21 -2.08 16 7 C -0.15 -1.97 7.09 31.61 0.22 -1.74 16 8 C 0.03 0.61 7.63 72.48 0.55 1.16 16 9 O -0.39 -9.45 10.50 -148.98 -1.56 -11.01 16 10 C 0.52 18.30 6.93 87.66 0.61 18.90 16 11 O -0.57 -22.89 15.83 -3.04 -0.05 -22.94 16 12 C 0.08 2.91 2.36 44.17 0.10 3.02 16 13 H 0.11 3.60 7.21 -2.39 -0.02 3.58 16 14 N -0.83 -29.95 8.94 -171.81 -1.54 -31.49 16 15 C -0.12 -4.94 4.45 30.59 0.14 -4.80 16 16 C 0.03 1.63 4.74 29.85 0.14 1.77 16 17 C -0.55 -30.47 9.11 25.60 0.23 -30.23 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 21 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.98 7.27 -2.39 -0.02 1.96 16 27 H 0.07 1.89 4.83 -2.38 -0.01 1.88 16 28 H 0.11 1.94 8.07 -2.38 -0.02 1.92 16 29 H 0.09 2.20 7.42 -2.39 -0.02 2.18 16 30 H 0.09 1.19 7.87 -2.39 -0.02 1.17 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.35 12.78 7.55 -89.70 -0.68 12.10 16 37 H 0.34 12.62 8.58 -89.69 -0.77 11.85 16 38 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.06 2.56 6.43 -2.39 -0.02 2.54 16 40 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 41 H 0.00 0.16 6.87 -2.39 -0.02 0.14 16 42 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -67.73 336.45 0.77 -66.96 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.43 Total: 31.91 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.46 Total: -5.42 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.68 Total: -105.32 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.61 Total: -33.95 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.73 0.77 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.496 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds