Wall clock time and date at job start Mon Mar 30 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.47067 * 2 1 4 4 C 1.42903 * 114.00290 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47107 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46649 * 175.00212 * 5 4 3 7 7 C 1.53004 * 109.47032 * 55.00658 * 5 4 3 8 8 N 1.46502 * 109.47565 * 295.00310 * 5 4 3 9 9 C 1.34777 * 119.99964 * 205.00604 * 8 5 4 10 10 O 1.21590 * 120.00064 * 359.97438 * 9 8 5 11 11 N 1.34777 * 119.99498 * 180.02562 * 9 8 5 12 12 C 1.46499 * 119.99602 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47310 * 178.28371 * 12 11 9 14 14 C 1.50700 * 115.54816 * 65.14029 * 13 12 11 15 15 H 1.07995 * 120.00241 * 265.40625 * 14 13 12 16 16 C 1.37881 * 119.99792 * 85.40649 * 14 13 12 17 17 N 1.31517 * 120.00009 * 353.56028 * 16 14 13 18 18 Si 1.86797 * 120.00062 * 173.55455 * 16 14 13 19 19 H 1.48508 * 109.46684 * 60.00447 * 18 16 14 20 20 H 1.48498 * 109.47295 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47568 * 300.00783 * 18 16 14 22 22 C 1.52998 * 117.49953 * 279.47373 * 13 12 11 23 23 C 1.52997 * 117.50052 * 210.81415 * 13 12 11 24 24 H 1.08999 * 109.47177 * 300.00067 * 1 2 3 25 25 H 1.08993 * 109.47244 * 59.99935 * 1 2 3 26 26 H 1.09004 * 109.46639 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47177 * 239.99933 * 2 1 3 28 28 H 1.09001 * 109.47115 * 119.99782 * 2 1 3 29 29 H 1.09002 * 109.46600 * 59.99828 * 4 3 2 30 30 H 1.09001 * 109.47049 * 300.00304 * 4 3 2 31 31 H 1.08997 * 109.46880 * 299.99468 * 7 5 4 32 32 H 1.09004 * 109.46837 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47536 * 59.99585 * 7 5 4 34 34 H 0.97000 * 119.99755 * 24.99505 * 8 5 4 35 35 H 0.96988 * 120.00247 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47822 * 298.28734 * 12 11 9 37 37 H 1.09007 * 109.47280 * 58.28652 * 12 11 9 38 38 H 0.96996 * 119.99717 * 185.06220 * 17 16 14 39 39 H 1.09000 * 117.49987 * 0.02562 * 22 13 12 40 40 H 1.09000 * 117.49844 * 145.01660 * 22 13 12 41 41 H 1.09007 * 117.49908 * 214.97581 * 23 13 12 42 42 H 1.08996 * 117.50394 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 4.9082 3.0255 0.0899 7 6 3.1570 3.6451 1.1809 8 7 3.3878 3.5601 -1.2524 9 6 4.0196 4.6560 -1.7175 10 8 4.9525 5.1290 -1.0975 11 7 3.6166 5.2281 -2.8693 12 6 4.3031 6.4197 -3.3746 13 6 3.6817 6.8392 -4.7083 14 6 2.2476 7.2974 -4.6416 15 1 1.4477 6.5978 -4.8337 16 6 1.9568 8.6100 -4.3353 17 7 2.9202 9.4308 -3.9778 18 14 0.1946 9.2224 -4.4284 19 1 -0.6515 8.4397 -3.4920 20 1 0.1493 10.6588 -4.0543 21 1 -0.3151 9.0557 -5.8131 22 6 4.1241 6.0831 -5.9627 23 6 4.5944 7.5210 -5.7295 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8334 0.9767 0.8908 31 1 2.0742 3.5580 1.0909 32 1 3.4383 4.6982 1.1806 33 1 3.4825 3.1826 2.1127 34 1 2.6434 3.1829 -1.7470 35 1 2.8723 4.8511 -3.3637 36 1 4.1999 7.2314 -2.6544 37 1 5.3598 6.1958 -3.5206 38 1 2.7075 10.3329 -3.6918 39 1 4.8575 5.2865 -5.8377 40 1 3.3780 5.9174 -6.7398 41 1 4.1575 8.3007 -6.3535 42 1 5.6375 7.6711 -5.4512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430961339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:05 Heat of formation + Delta-G solvation = -65.415555 kcal Electronic energy + Delta-G solvation = -21068.112910 eV Core-core repulsion = 17855.835209 eV Total energy + Delta-G solvation = -3212.277700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56228 -38.26842 -36.74925 -35.03373 -33.18926 -31.94061 -31.56705 -30.11552 -26.47596 -26.04265 -24.98400 -23.02094 -21.41968 -21.03779 -20.07840 -19.32460 -17.72479 -16.98201 -16.41600 -16.14234 -15.44158 -14.83459 -14.58282 -14.55940 -14.11418 -13.89452 -13.53600 -13.23803 -12.93351 -12.60961 -12.49220 -12.41957 -11.84938 -11.69776 -11.56322 -11.49110 -11.13984 -10.96489 -10.89961 -10.87132 -10.51744 -10.23582 -9.81880 -9.66821 -9.45176 -8.93126 -8.75631 -8.45533 -8.20732 -7.90106 -6.03720 -4.12151 3.26727 3.29882 3.35655 3.36988 3.48906 3.89721 4.38652 4.72124 4.79462 4.88390 4.99710 5.06747 5.12018 5.21985 5.24456 5.35940 5.40878 5.55031 5.62245 5.68634 5.86691 5.89256 6.06892 6.14305 6.38467 6.47202 6.51682 6.64753 6.73136 6.88693 6.91592 7.02015 7.12608 7.40483 7.47878 7.52622 7.69859 7.85269 8.38398 8.76147 8.88355 9.29959 9.54289 11.04143 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.004342 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.823027 B = 6446.549193 C = 7014.664730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.055 3.945 5 C 0.168 3.832 6 H 0.097 0.903 7 C -0.160 4.160 8 N -0.746 5.746 9 C 0.698 3.302 10 O -0.606 6.606 11 N -0.721 5.721 12 C 0.183 3.817 13 C 0.029 3.971 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -17.351 6.657 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.302 6.302 4 C -0.022 4.022 5 C 0.062 3.938 6 H 0.115 0.885 7 C -0.218 4.218 8 N -0.403 5.403 9 C 0.398 3.602 10 O -0.486 6.486 11 N -0.373 5.373 12 C 0.059 3.941 13 C 0.028 3.972 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.229 0.771 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.939 -16.493 7.209 18.024 hybrid contribution -1.474 -0.135 -0.456 1.549 sum -2.413 -16.628 6.753 18.109 Atomic orbital electron populations 1.21741 0.93749 1.02077 1.03353 1.22445 0.95639 0.83958 0.99884 1.87932 1.20779 1.26123 1.95379 1.22851 0.81774 0.96801 1.00824 1.20740 0.99730 0.89063 0.84268 0.88535 1.22099 1.01657 1.01392 0.96669 1.45114 1.38155 1.31085 1.25947 1.16063 0.82427 0.80161 0.81543 1.90856 1.31876 1.65692 1.60204 1.45135 1.37439 1.31479 1.23223 1.20828 0.92212 0.84657 0.96393 1.19036 0.95119 0.97833 0.85214 1.20291 0.89444 0.94324 1.49700 0.92315 1.24977 0.96830 0.96624 0.94551 1.69967 1.31531 1.06978 1.42555 0.86698 0.85162 0.77847 0.78495 1.20283 1.21295 1.20238 1.23013 1.03357 0.94705 1.03738 1.22487 0.97678 0.93587 1.04841 0.91851 0.91663 0.91307 0.93489 0.93595 0.92692 0.92060 0.91729 0.91874 0.92480 0.76927 0.77122 0.91271 0.94821 0.92813 0.91680 0.90444 0.89852 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.11 9.19 -35.23 -0.32 -4.43 16 4 C 0.05 0.54 5.68 37.15 0.21 0.75 16 5 C 0.17 2.19 2.98 -67.93 -0.20 1.99 16 6 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 7 C -0.16 -2.11 9.29 37.16 0.35 -1.77 16 8 N -0.75 -11.34 5.06 -58.67 -0.30 -11.64 16 9 C 0.70 13.83 8.53 -86.92 -0.74 13.09 16 10 O -0.61 -14.20 16.01 5.29 0.08 -14.11 16 11 N -0.72 -14.61 5.48 -65.22 -0.36 -14.96 16 12 C 0.18 4.28 5.50 -4.04 -0.02 4.26 16 13 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 14 C -0.50 -13.02 8.63 -34.44 -0.30 -13.32 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 17 N -0.87 -24.60 12.91 55.43 0.72 -23.88 16 18 Si 0.89 20.85 29.55 -169.99 -5.02 15.82 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.21 -4.44 9.96 -26.70 -0.27 -4.70 16 23 C -0.15 -3.42 9.42 -26.70 -0.25 -3.67 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.40 5.35 8.40 -40.82 -0.34 5.00 16 35 H 0.40 7.34 8.38 -40.82 -0.34 7.00 16 36 H 0.07 1.87 8.14 -51.93 -0.42 1.44 16 37 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -30.52 353.34 -8.14 -38.66 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.36 Total: 10.25 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.91 Total: -1.03 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.06 Total: -50.48 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.24 Total: -18.55 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.52 -8.14 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430961339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.754 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds